BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23180.1
Length=2978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313192 jgi|Araly1|313192|fgenesh1_pm.C_scaffold_1001972 2274 0.0
> Ahg313192 jgi|Araly1|313192|fgenesh1_pm.C_scaffold_1001972
Length=3810
Score = 2274 bits (1231), Expect = 0.0
Identities = 1353/1411 (96%), Gaps = 11/1411 (1%)
Strand=Plus/Plus
Query 492 TTTCTCACTGTTGAAGCTAGAAAACAATCT---AGAAGAATAAGACGCGAGCGCTCCTTC 548
||||| ||||| ||||||||||||||| || ||||||| ||||||||||| |||||||
Sbjct 1540 TTTCTTACTGTCGAAGCTAGAAAACAACCTAGCAGAAGAAGAAGACGCGAGCTCTCCTTC 1599
Query 549 AGCC-CTTTTCCAGTACTTATTCAATCGAACCGTCGTCTTCGTCATGGTTTCTCAGAGCT 607
|||| | |||||||||||||| || ||||||| ||||||||||||||||||||| |||||
Sbjct 1600 AGCCAC-TTTCCAGTACTTATCCACTCGAACCATCGTCTTCGTCATGGTTTCTCCGAGCT 1658
Query 608 CAATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCAC-TCTTAAAG 666
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1659 CAATTCGAGTTTTGATCGTTCCAACAGTGGAGAAACTGGTTCCGATACCACGT-TTGAAG 1717
Query 667 ATGGTGAAGAAGTGAGGAGTGAAAGCTCTTCAGGTGTTGGTGATAGCTATGTGGGCTTGT 726
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1718 ATGGTGAAGAAGTGAGGGGTGAAAGCTCTTCAGGTGTTGGTGATAGCTATGTGGCCTTGT 1777
Query 727 TTGTGGGAATGCTCGGTTTGGACAACGATCCTCTTGATAGAGAGCAGGCGATAGAGACGC 786
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1778 TTGTGGGAATGCTTGGTTTGGACAACGATCCTCTTGATAGAGAGCAGGCAATAGAGGCGC 1837
Query 787 TATGGAAGTACTCTTTGGGTGGAAAGAAATGTATTGATGCGATAATGCAGTTTCATGGTT 846
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1838 TATGGAAGTACTCTTTGGGTGGGAAGAAATGTGTTGATGCGATAATGCAGTTTCATGGTT 1897
Query 847 GTTTGAATCTAATTGTCAATCTTCTCAAGTCTGAGTCCAGCTCCGCCTGTGAAGCTGCTG 906
|||||| ||| ||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1898 GTTTGAGTCTCGTTGTCAATCTTCTTAAGTCCGAGTCCAGCTCCGCTTGTGAAGCTGCTG 1957
Query 907 CTGGGCTT-ATACGGTCTATAGCTTCTGTGAATCTGTACAGAGAATCCGTTGCTGAGAGT 965
||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1958 CTGGG-TTGATACGGTCTATAGCTGCTGTGAATCTATACAGAGAATCCGTTGCTGAGAGT 2016
Query 966 GGAGCGTTGGAAGAGATAACCGCTCTACTGAGCCGACCTTCGCTAGCTACAGTGGTGAAA 1025
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 2017 GGAGCGTTGGAAGAGATAACCGCTCTACTGAGCCGGCCTGCGTTAGCTACAGTGGTGAAA 2076
Query 1026 GAACAATGCATATGTGCTCTGTGGAATCTGACTGTGGATGAAGAAATTAGGGAGAAGGTT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2077 GAACAATGCATATGTGCTCTGTGGAATCTGACTGTGGATGAAGAAATTAGGGAAAAGGTT 2136
Query 1086 GCTGACTTTGATATCCTTAGGCTACTCATTAGTTTCCTTGAAGATGATGATGTAAACGTA 1145
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 2137 GCTGACTTTGATATCCTGCGGCTTCTCATTAGTTTCCTTGAAGATGATGATGTAAACGTA 2196
Query 1146 AAGGAAGCAGCTGGTGGCGTCTTGGCCAATCTAGCCCTTAGCCGCTCG-ACTCACAAGAT 1204
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2197 AAGGAAGCAGCTGGTGGCGTCTTGGCCAATCTAGCCCTTAGCCGCTCGAAC-CACAAGAT 2255
Query 1205 TCTGGTTGAAGTAGGAGTCATACCAAAACTGGCAAAATTGTTGAAAGCCGATAATACAGA 1264
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 2256 TCTGGTTGAAGTAGGAGTCATACCCAAACTGGCAAAATTGTTGAAAGGCGATAATACAGA 2315
Query 1265 AAACAAAGGGTCTAAAGTTATTAGAAAAGAAGCAAGAAATGTGCTTTTGGAGCTAGCCAA 1324
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2316 AAACAAAGGGTCTAAAGTTATTAGAAAAGAAGCAAGAAATGTGCTTTTGGAGCTCGCCAA 2375
Query 1325 AGACGAATACTACAGAATTCTCGTCATTGAGGAGGGAGTTGTACCCATTCCCATAATTGG 1384
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2376 AGACGAATACTACAGAATTCTTGTCATTGAGGAGGGTGTTGTACCCATTCCCATAATTGG 2435
Query 1385 TGCAGACGCTTATAAGTCCTTCAGACCGGATTTGTATTCTTGGCCTAGTTTACCAGATGG 1444
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2436 TGCAGACGCTTACAAGTCCTTCAGACCGGATCTGTATTCTTGGCCTAGTTTACCAGATGG 2495
Query 1445 TATAAATATTGAGCAGACAGCAAAAGCTCCTTCAAGATTTGGTGCCTCTGAGCTGCTCCT 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 TATAAATATTGAGCAGACAGCAAAAGCTCCTTCAAGATTTGGTGCCTCTGAGCTGCTCCT 2555
Query 1505 TGGTTTAAATGTTGACAAGAATGTTGACGACGTAGATGAAGCCAAAATGAAAGCAATAGT 1564
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2556 TGGTTTAAATGTTGACAAGAATGTTGACGACGTAGATGAAGCGAAAATGAAAGCAATAGT 2615
Query 1565 TGGGAGGACAAATCAGCAGTTCCTTGCCCGTATTGGAGCAATTGAATTTGAGAAGGAAAT 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 TGGGAGGACAAATCAGCAGTTCCTTGCCCGTATTGGAGCAATTGAATTTGAGAAGGAAAT 2675
Query 1625 TAAGTCCGAAGGGCCAGGGAAATCTCAGCAGCTTACCCTTCTTCCTTGTGTAGATGGTGT 1684
||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2676 TAAATCCGAAGGGCCAGCGAAATCTCAGCAGCTTACTCTTCTTCCTTGTGTAGATGGTGT 2735
Query 1685 GGCTCGATTAGTCTTGATTCTTGGATTGGCAGATGAATTGGCAGCTACAAGAGCTGCAGA 1744
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2736 GGCTCGATTAGTCTTGATTCTTGGATTGGCAGACGAATTGGCAGTTACAAGAGCTGCAGA 2795
Query 1745 GTCAATTGCTGATGCATCTATCAACGAGGATATGCGGGTTTCTTTCATGGAAGCCGGAGC 1804
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2796 GTCAATTGCTGATGCATCTATCAACGAGGATATGCGGGTTTCGTTCATGGAAGCCGGAGC 2855
Query 1805 TGTAAAGCCTTTGGTTCAGCTTTTAGCCAACAACAACAAAGAGACTGTTAAATTACCCGT 1864
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2856 TGTAAAGCCTTTGGTTCAGCTTTTAGCCAACAACAACAAAGAGGCTGTTAAATTACCCGT 2915
Query 1865 CATCCGTGCCTTGAAAAATTTATCACTTAGC 1895
|||||||||||||||||||||||||||||||
Sbjct 2916 CATCCGTGCCTTGAAAAATTTATCACTTAGC 2946
Score = 1243 bits (673), Expect = 0.0
Identities = 776/827 (94%), Gaps = 2/827 (0%)
Strand=Plus/Plus
Query 2084 CAGAAAGGAAGTTCTGGACGCTGCTGTTTTTTCTCGGCTCGTCCAGATTGCGAAAACAGC 2143
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2985 CAGAAAGGAAGTTCTGGACGCTGCTGTTTTTTCTCGGCTCGTTCAGATTGCGAAAACAGC 3044
Query 2144 CTCTCCGAACCTGCTAAGAAACGCAATCTCTGTCATCGAGTTTGGTATAATCAGTAATCC 2203
|||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 3045 CTCTCCAAACTTGCTAAGAAATGCAATCTCTGTCATCGAGTTTGGTATTGTCAGTAATCC 3104
Query 2204 AAACATGGACACGATCATCTCCAAGGATATCACAACTGTTCTTGATCTTGCTCTCCGGCA 2263
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3105 AAACATGGACACGATCATCTCTGGGGATATCACAACTGTTCTTGATCTTGCTCTCCGGCA 3164
Query 2264 GAAAGTCCTGGAAGAACCTGAGAATGAAGCTGAGGAGTTAGAGAAACATCTGCTTAAGCT 2323
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 3165 GAAAGTCCTGGAAGAACCTGAGAACGAAGCTGAGGAGTTAGAGAAACATCTTCTTGAGCT 3224
Query 2324 AGAAGAAGCTGGTTTGACGATTTCCGCTGCTTCAAGGCTACTGACAAAACTTCTTGACTC 2383
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3225 AGAAGAAGCTGGTTTGACGATTTCCGCTGCTTCAAGGCTACTGACAAAACTTGTCGACTC 3284
Query 2384 CGAGTCCTTTCGCCAAACAATAGATACCGCGGTCTTCATAGAATTAGTAAGGAAGATCCT 2443
|||||||||||||||||||||||| | | ||||||| ||||||| |||||||||||||
Sbjct 3285 TGAGTCCTTTCGCCAAACAATAGATGTCACAGTCTTCACAGAATTACTAAGGAAGATCCT 3344
Query 2444 AAGATCAAGCCTCCCTCTACACTACAAAGACTGGGTTGCCGCTTGTCTTGTCAAACTCAC 2503
|| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3345 AAAATCTAGCCTCCCTCTACACTACAAAGACTGGGTTGCTGCTTGTCTTGTCAAACTCAC 3404
Query 2504 CGCTCTCTCCTCTCCCTCTCAATCCCTCAACAATCCGATCAATCTT-GAGGTAACTCTGT 2562
|||||||||||||||| ||||| ||||||||||||| ||||| | | |||||||||||||
Sbjct 3405 CGCTCTCTCCTCTCCCCCTCAACCCCTCAACAATCCAATCAA-CATCGAGGTAACTCTGT 3463
Query 2563 ACAAAACGATCCCGAGCCTCGTGGAACAAATGAGCTTTTCCTCATCACCAGAAACGAAAG 2622
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||
Sbjct 3464 ACAAAACGATCCCGAGCCTTGTAGAACAAATGAGCTTTTCCTCATCACCAGAAGCGAAAG 3523
Query 2623 AAGCAGCGGTTTTAGAACTGAACAAGATAGTCTCCGAGGGAGTTCCAGAATCTATCCAAA 2682
||||||||||||| |||||||||| |||| ||||||||||||||||||| || | |||||
Sbjct 3524 AAGCAGCGGTTTTGGAACTGAACAGGATAATCTCCGAGGGAGTTCCAGAGTCGACCCAAA 3583
Query 2683 CACTTGCTTCACAAGGAGGTATCGAACCGCTGGTTAAGCTTCTTGAAGAAAGGAACGAGC 2742
| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 3584 CTCTTGCTTCACACGGAGGTATCGAGCCGCTGGTGAAGCTTCTAGAAGAAAGGAACGAGC 3643
Query 2743 GGTGCGTTGAAGCGAGTTTGTCAGTATTGTACAACTTAACCATGGACAGTGAGAACCACA 2802
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 3644 GGTGCGTTGAAGCGAGTTTGTCAGTATTGTATAACCTAAGCATGGACAGTGAGAACCACA 3703
Query 2803 CAGCCATCATAAGAGCAGGAGCTGTACCAGTATTGAGACGTATCGTTATGTCTCAACGAC 2862
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 3704 CAGCCATCATAAGAGCAGGAGCAGTACCAGTATTGAGACGTATCGTTATGTCTCAAAGAC 3763
Query 2863 CACAATGGGAGAAAGCTCTTCGGTTACTCAGAAATTTACCCGTTTAA 2909
| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3764 CTCAATGGGAAAAAGCTCTTCGGTTACTCAGAAATTTACCCGTTTAA 3810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112442403240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5