BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23200.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912183 jgi|Araly1|912183|Al_scaffold_0001_2437 2471 0.0
Ahg930323 jgi|Araly1|930323|scaffold_302780.1 233 3e-60
> Ahg912183 jgi|Araly1|912183|Al_scaffold_0001_2437
Length=1659
Score = 2471 bits (1338), Expect = 0.0
Identities = 1562/1670 (94%), Gaps = 16/1670 (1%)
Strand=Plus/Plus
Query 59 ATGGATCACAAAATCCTACTAACACCTCCCAAATCTTTATACACCAAATGTATCATAACC 118
|||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||
Sbjct 1 ATGGATCACAAACTACTACTAACATTTCCCAAATGTGTATACACCAAATGTATCATAACC 60
Query 119 ATCATTTACGTCGTATCAATATCTCATCTAAATGCCCATTTCATAACTTCATGCAAACAA 178
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ATCATTTACGTCGTATCAATCTCTCATCTTAATGCCCATTTCATAACTTCATGCAAACAA 120
Query 179 ACCCCATACCCTAGCGTCTGCGACCACCACATGTCTAATTCACCTCTCAAAACTTTAGAC 238
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ACTCCATACCCTAGCGTCTGCGACCACCACATGTCGAATTCACCTCTCAAAACTTTAGAC 180
Query 239 GACCAAACGGATGGGTTCACTTTCCACGACCTTGTGGTCAGCTCCACCATGGACCAGGCC 298
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GACCAAACCGATGGATTCACTTTCCACGACCTTGTGGTCAGCTCCACCATGGACCATGCC 240
Query 299 GTGCAACTACACCGCCTTGTCTCTTCCTTGAAACAGCATCATTCTCTCCACAAACACGCA 358
||||||||||||||||| |||||| || ||||||||| |||||||||||||||||| |||
Sbjct 241 GTGCAACTACACCGCCTCGTCTCTACCGTGAAACAGCGTCATTCTCTCCACAAACATGCA 300
Query 359 ACATCAGCTTTGTTTGACTGCTTGGAGCTCTACGAAGACACTATAGACCAACTCAACCAC 418
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTCAGCTTTGTTTGACTGCTTGGAGCTCTACGAAGACACTATAGACCAACTCAACCAC 360
Query 419 TCTCGGAGATCGTACGGTCAATATTCTTCGCCACATGATAGACAAACCTCGTTAAGCGCG 478
||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 361 TCTAGGAGATCGTACGGTCTATATTCTTCGCCGCATGATAGACAAACCGCGTTAAGCGCA 420
Query 479 GCCATAGCTAATCAAGACACTTGCAGAAACGGATTTAGAGATTTTAAGTTAACCTCTTCG 538
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 421 GCCATAGCTAATCAAGACACTTGCAGAAACGGATTTAAAGATTTTAACTTAACCTCTTCG 480
Query 539 TATTCAAAGTATTTCCCGGTACAATTTCACAGGAATCTCACTAAGTCTATT-AGCAACTC 597
||||||||||||||||| |||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 481 TATTCAAAGTATTTCCCAGTACAAATTCACCGGAATCTCACTAAGTCT-TTAAGCAACTC 539
Query 598 TTTGGCAGTTACTAAGGCTGCTGCTGAGGCTGAGGCGGTTGCCGAGAAATATCCATCGAC 657
||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct 540 TTTGGCAGTTACTAA-G--GCTGC---GGCCGAGGCGGTTGCCGAGAAATATCCATCGAC 593
Query 658 GGGGTTCACTAAATTCAGCAAACAAAGAAGTAGTGCCGGAGGTGGTAGCCACCGGAGATT 717
|||||||||||||||||| |||||||||||||| | ||||||||| ||| ||||||||
Sbjct 594 GGGGTTCACTAAATTCAGTAAACAAAGAAGTAGCGGTGGAGGTGGTGGCCGTCGGAGATT 653
Query 718 ATTGTTGTTTTCCGACGAGAAATTTCCATCGTGGTTCCCTCTTTCCGACCGTAAACTACT 777
|||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATTGATGTTTTCCGACGATACGTTTCCATCGTGGTTCCCTCTTTCCGACCGTAAACTACT 713
Query 778 GGAAGATTCCAAAACTACGGCAAAAGCCGATCTTGTGGTGGCTAAGGACGGTTCGGGTCA 837
|||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 714 GGAAGATTCCGAAACTACGGTGAAAGCCGATCTTGTGGTGGCTAAAGACGGTTCGGGTCA 773
Query 838 CTACACAAGCATTCAACAAGCGGTAAACGCAGCTGCCAAACTTCCTCGGAGAAACCA-GA 896
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 774 TTACACAAGCATTCAACAAGCGGTAAACGCAGCAGCCAAACTTCCTCGGAGAAA-CACTA 832
Query 897 GACTTGTGATATACGTTAAAGCCGGCGTTTACAGAGAAAACGTGGTAATCAAGAAATCGA 956
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 833 GACTTGTGATATACGTTAAAGCCGGCGTTTACAAAGAAAACGTGGTGATCAAGAAATCGA 892
Query 957 TCAAGAACGTGATGGTTATCGGAGATGGCATCGATTCTACCATCGTCACCGGTAATAGGA 1016
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| ||
Sbjct 893 TCAAGAACGTGATGGTTATCGGAGACGGCATTGATTCTACCATCGTCACTGGTAATAAGA 952
Query 1017 ACGTTCAAGATGGCACGACGACGTTTAGGTCCGCAACTTTTGCTGTTTCCGGCAACGGTT 1076
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 953 ACGTTAAAGATGGCACGACGACGTTTCGGTCCGCAACTTTTGCTGTTTCCGGCAGCGGTT 1012
Query 1077 TTATCGCACAAGGCATAACATTCGAGAACACGGCAGGACCGGAGAAACATCAGGCGGTGG 1136
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1013 TTATCGCACGAGGCATAACATTCGAGAACACGGCAGGACCGGAGAAACATCAGGCGGTCG 1072
Query 1137 CTCTCCGATCAAGTTCAGACTTCTCCGTCTTCTACGCCTGCTCTTTCAAAGGCTATCAAG 1196
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1073 CTCTCCGATCAGGTTCAGACTTCTCCGTCTTCTACGACTGCTCTTTCAAAGGCTATCAAG 1132
Query 1197 ACACTCTCTACCTTCATTCTAGTCGTCAGTTCTTGAGAAACTGCAATATTTACGGAACCG 1256
|||||||||||||||||||| | |||||||||||||||||||| || || ||||| ||||
Sbjct 1133 ACACTCTCTACCTTCATTCTCGCCGTCAGTTCTTGAGAAACTGTAACATCTACGGCACCG 1192
Query 1257 TCGATTTCATCTTCGGAGACGCAACCGCCATCCTCCAAAACTGTAACATCTACGCTCGTA 1316
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TTGATTTCATCTTCGGAGACGCAACCGCCATCCTCCAAAACTGTAACATCTACGCTCGTA 1252
Query 1317 AGCCGATGAGCGGCCAGAAAAACACGATCACCGCTCAATCACGCAAAGAACCCGA-CGAG 1375
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 1253 AGCCGATGAGCGGCCAGAAAAACACGATCACCGCCCAATCACGCAAAGA-CCCGAACGAG 1311
Query 1376 A-CTACTGGCTTCGTCATCCAGAGCTCGACGGTGGCTACTGCGTCGGAAACTTATTTAGG 1434
| | |||||||||||| |||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1312 AAC-ACTGGCTTCGTCGTCCAGAGCTCGACGGTGGCTACGGCCTCGGAGACTTATTTAGG 1370
Query 1435 ACGGCCGTGGAGATCGCATTCGAGGACGGTTTTCATGAAATGTAATCTTGGAGCGTTGGT 1494
||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1371 ACGGCCGTGGAAATCGTATTCGAGGACGGTTTTCATGAAATGTAATCTCGGAGCGTTGGT 1430
Query 1495 GAGTCCGGCGGGATGGTTGCCTTGGAGTGGT-AGTTTTGCTCTTAGCACTCTTTATTACG 1553
| ||||||||| ||||||||||||| || ||||| ||||| || |||||||||||||
Sbjct 1431 TAATCCGGCGGGGTGGTTGCCTTGGAACGGCGAGTTT-GCTCTGAGTACTCTTTATTACG 1489
Query 1554 GTGAGTATGGTAATACCGGCGCCGGAGCAAGTGTCTCCGGTAGAGTTAAGTGGCCAGGTT 1613
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1490 GTGAGTATGGTAATACCGGCGCCGGAGCAAGTGTCTCCGGTAGAGTTAAATGGCCGGGTT 1549
Query 1614 ATCATGTTATAAAGACGGTGACAGAGGCGGAAAAATTCACGGTGGAGAATTTCTTGGACG 1673
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1550 ATCATGTTTTAAAGACGGTGACAGAGGCGGGGAAATTCACGGTGGAGAATTTCTTGGACG 1609
Query 1674 GAAACTATTGGATTACGGCTACGGGAGTACCGGTCAACGATGGACtttga 1723
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1610 GAAACTATTGGATTACGGCGGCGGGAGTACCGGTCAACGATGGACTTTGA 1659
> Ahg930323 jgi|Araly1|930323|scaffold_302780.1
Length=232
Score = 233 bits (126), Expect = 3e-60
Identities = 165/184 (90%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 878 CTTCCTCGGAGAAACCAGAGACTTGTGATATACGTTAAAGCCGGCGTTTACAGAGAAAAC 937
|||||||||||||| |||||||| |||||||||| || ||| || ||||| ||||||||
Sbjct 1 CTTCCTCGGAGAAAAAAGAGACTTATGATATACGTGAAGGCCAGCTTTTACCGAGAAAAC 60
Query 938 GTGGTAATCAAGAAATCGATCAAGAACGTGATGGTTATCGGAGATGGCATCGATTCTACC 997
||||| | ||| |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 61 GTGGTGAGCAAAAAATCGATCAAGAACGTGATGGTTATCGGAGACGGTATCAATTCTACC 120
Query 998 ATCGTCACCGGTAATAGGAACGTTCAAGATGGCACGACGACGTTT-AGGTCCGCAACTTT 1056
||||||||||||||||| |||||| ||||||||||||| |||||| || |||||||||||
Sbjct 121 ATCGTCACCGGTAATAGAAACGTTGAAGATGGCACGACAACGTTTCAG-TCCGCAACTTT 179
Query 1057 TGCT 1060
||||
Sbjct 180 TGCT 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5