BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23201.1
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921360 jgi|Araly1|921360|scaffold_102641.1 715 0.0
Ahg921366 jgi|Araly1|921366|scaffold_102647.1 416 8e-116
Ahg946357 jgi|Araly1|946357|scaffold_702586.1 396 1e-109
Ahg354904 jgi|Araly1|354904|fgenesh1_pg.C_scaffold_7002077 89.8 2e-17
> Ahg921360 jgi|Araly1|921360|scaffold_102641.1
Length=622
Score = 715 bits (387), Expect = 0.0
Identities = 504/561 (90%), Gaps = 6/561 (1%)
Strand=Plus/Plus
Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 30 ATGTCATCCACGGATCTCAAACCGGAATCTAAATCTGAAAATAACCAAGTCTCGTCGAAG 89
Query 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAATC 119
||||| |||||| ||||| | || ||||||||||||||| |||||||||||||||||||
Sbjct 90 TCGAAGGCAGTGAAAGGTCCATTA-CATGTGTTCATGAAAAAAGGTGGTTGCGAAGAATC 148
Query 120 ATATACCGCTTTTGTAGGTCGTGATGTGCAGAAAGAT-ACGTGTAGGGAAGCCTATTCGA 178
|||||| |||| ||||||| |||||| |||||||||| | |||||||||||||| ||| |
Sbjct 149 ATATACAGCTTGTGTAGGTTGTGATGCGCAGAAAGATGA-GTGTAGGGAAGCCTTTTCAA 207
Query 179 TGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGCGATTTCTCGCGTTGCAGA 238
|| | |||||||||||||| |||||||||||||||||||||| || |||||||| |||||
Sbjct 208 TGCTTGAAAAGTGTATGAAAGCTCGCTCTGATTACTTTGAGCCATATCTCGCGTGGCAGA 267
Query 239 ACGCTAGGGCTGAAGTGATGCAGAGAGAAATCGATGCCTTCCTCCATGCGAAACCAAAGG 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 268 ACGCTAGGGCTGAAGTGATGCTGAGAGAAATCGATGCCTTCCTCCATGCGAAACCAAAGG 327
Query 299 ACAGAGACGAGATGTTTACCAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCATTTATGG 358
| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||
Sbjct 328 ATAGAGACGAGATGTTTACCAAGTTCATGATAAGAGGTGATTGCAAAGAAGCTTTTATGG 387
Query 359 CTTGGATTGACTTCTGCAAAGAATCTAGGAAGAACAATAAAAGTTGTCGTCATA-ATCCT 417
|||||| |||||||||||||||| ||| |||||| ||||||||||||| ||||| | ||
Sbjct 388 CTTGGAATGACTTCTGCAAAGAAGCTAAGAAGAATAATAAAAGTTGTCTTCATACA-CCA 446
Query 418 GCCATGGACACCATGCTCAAGTGTGTGAAGGCTCACTCTGATTACTATCATCCGCTTCTC 477
||||||||||| || |||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 447 ACCATGGACACCTTGTTCAAGTGTATGAAGGCTCATTCTGATTACTATCACCCGCTTCTC 506
Query 478 ACGGTATTCAAAGCTGGTGAAGAACATCATAAAAAGGAGATCGACGCCTTGAATATGAGA 537
|||||||||||| || |||||||||| |||||| |||||| | |||||| ||| |||
Sbjct 507 ACGGTATTCAAAAATGCTGAAGAACATTTTAAAAAAGAGATCAAAGCCTTGGATACGAGG 566
Query 538 GAGCAAACTGAAGCTGATGCT 558
||| | ||||||||||||||
Sbjct 567 GAGGGAGCTGAAGCTGATGCT 587
> Ahg921366 jgi|Araly1|921366|scaffold_102647.1
Length=613
Score = 416 bits (225), Expect = 8e-116
Identities = 472/585 (81%), Gaps = 42/585 (7%)
Strand=Plus/Plus
Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60
|||||||| ||||||||||||| |||||||||| ||||||||||||||||| | | ||
Sbjct 33 ATGTCATCTACGGATCTGAAACAGGAATCCAAATCTGAAAATAACCAAGTC-C--C-AA- 87
Query 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAA-T 118
|| ||| |||| ||| |||| || || | ||| |||||| |||||||||||||| || |
Sbjct 88 CC-AAGGAAGTGGGAGATCGATTA-CAAGAGTTTATGAAAAAAGGTGGTTGCGAA-AATT 144
Query 119 CATATACCGCTTTTGTAGGTCGTGATGT-GCAGAAAGAT-ACGTGTAGGGAAGCCTATTC 176
|||||| |||| ||||||| ||||| | || | ||||| | ||||| ||||||||||||
Sbjct 145 CATATATAGCTTGTGTAGGTTGTGAT-TCGCGGGAAGATGA-GTGTACGGAAGCCTATTC 202
Query 177 GATGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAG-CGATTTCTCGCGTTGC 235
||| |||||||||||||||||||||||||||||||||||||| || | ||||||| ||
Sbjct 203 AATGCTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGACG-TATCTCGCGCTGA 261
Query 236 AGAACGCTAGGGCTGAAGTGATG-C-AGAGAGAAATCGATGCCTTCCTCCATGCGAAACC 293
|||||||||| |||||||||||| | || |||| |||| | ||||||||||||||||||
Sbjct 262 AGAACGCTAGTGCTGAAGTGATGGCTAGGGAGA--TCGAAGTCTTCCTCCATGCGAAACC 319
Query 294 AAAGGACAGAGACGAGATGTTTAC-CAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCAT 352
||| |||||||||||| |||| | ||| ||||| |||||||||| |||||||||||| |
Sbjct 320 AAATGACAGAGACGAGTTGTT-AGGCAAATTCATTACAAGAGGTGGTTGCAAAGAAGCTT 378
Query 353 TTATGGCTTGGATTGACTTCTG-CAAAGAATCTAGGAAGAACAATAAAAGT-TGTCGTCA 410
|||||||||||| || | | | ||||| | | ||||||||| |||| | | | |
Sbjct 379 TTATGGCTTGGAGGGA-TAGTTACGAAGAAGCCAAGAAGAACAAGGGAAGTCT-T--T-A 433
Query 411 TA-ATCCTGCCATGGACACCATGCTCAA-GTGTGTG-AAGGCTCACTCTGATTACTATCA 467
|| | |||||| || ||||| || |||| |||| || ||| |||||||||||||||||||
Sbjct 434 TACA-CCTGCCTTGAACACCTTG-TCAAAGTGTATGGAAG-CTCACTCTGATTACTATCA 490
Query 468 TCCGCTTCTCACGGTA-TTCAAAGCTGGTGAAGAACA-TCATAAAAAGGAG---ATCGAC 522
||||||||| | || || ||| | ||||||||| | ||| |||||| || | |
Sbjct 491 GCCGCTTCTCGCAGTGGTTAAAAATTA-TGAAGAACACT-ATAGTAAGGAGCGTATTGCC 548
Query 523 GCCTTGAATATGAGAGAGCAAACTGAAGCTGATGCTAAGGGATGA 567
||||||| | | |||||| |||||| ||| ||||||||||||
Sbjct 549 TTCTTGAATGCGTGGGAGCAAGCTGAAGATGAGGCTAAGGGATGA 593
> Ahg946357 jgi|Araly1|946357|scaffold_702586.1
Length=607
Score = 396 bits (214), Expect = 1e-109
Identities = 430/529 (81%), Gaps = 35/529 (7%)
Strand=Plus/Plus
Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60
|||||||| ||||||||||||| |||||||||| ||||||||||||||||| | | ||
Sbjct 33 ATGTCATCTACGGATCTGAAACAGGAATCCAAATCTGAAAATAACCAAGTC-C--C-AA- 87
Query 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAA-T 118
|| ||| |||| ||| |||| || || | ||| |||||| |||||||||||||| || |
Sbjct 88 CC-AAGGAAGTGGGAGATCGATTA-CAAGAGTTTATGAAAAAAGGTGGTTGCGAA-AATT 144
Query 119 CATATACCGCTTTTGTAGGTCGTGATGT-GCAGAAAGAT-ACGTGTAGGGAAGCCTATTC 176
|||||| |||| ||||||| ||||| | || | ||||| | ||||| ||||||||||||
Sbjct 145 CATATATAGCTTGTGTAGGTTGTGAT-TCGCGGGAAGATGA-GTGTACGGAAGCCTATTC 202
Query 177 GATGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAG-CGATTTCTCGCGTTGC 235
||| |||||||||||||||||||||||||||||||||||||| || | ||||||| ||
Sbjct 203 AATGCTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGACG-TATCTCGCGCTGA 261
Query 236 AGAACGCTAGGGCTGAAGTGATG-C-AGAGAGAAATCGATGCCTTCCTCCATGCGAAACC 293
|||||||||| |||||||||||| | || |||| |||| | ||||||||||||||||||
Sbjct 262 AGAACGCTAGTGCTGAAGTGATGGCTAGGGAGA--TCGAAGTCTTCCTCCATGCGAAACC 319
Query 294 AAAGGACAGAGACGAGATGTTTAC-CAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCAT 352
||| |||||||||||| |||| | ||| ||||| |||||||||| |||||||||||| |
Sbjct 320 AAATGACAGAGACGAGTTGTT-AGGCAAATTCATTACAAGAGGTGGTTGCAAAGAAGCTT 378
Query 353 TTATGGCTTGGATTGACTTCTG-CAAAGAATCTAGGAAGAACAATAAAAGT-TGTCGTCA 410
|||||||||||| || | | | ||||| | | ||||||||| |||| | | | |
Sbjct 379 TTATGGCTTGGAGGGA-TAGTTACGAAGAAGCCAAGAAGAACAAGGGAAGTCT-T--T-A 433
Query 411 TA-ATCCTGCCATGGACACCATGCTCAA-GTGTGTGAAGGCTCACTCTGATTACTATCAT 468
|| | |||||| || ||||| || |||| |||| || ||||||||||||||||||||||
Sbjct 434 TACA-CCTGCCTTGAACACCTTG-TCAAAGTGTATGGAGGCTCACTCTGATTACTATCAG 491
Query 469 CCGCTTCTCACGGTATTCAAAGCTGGTGAAGAACA-TCATAAAAAGGAG 516
|| ||||| | || ||||| | ||||||||| | ||| ||||||
Sbjct 492 CCATTTCTCGCAGTGGTCAAAAATTATGAAGAACACT-ATAGTAAGGAG 539
> Ahg354904 jgi|Araly1|354904|fgenesh1_pg.C_scaffold_7002077
Length=501
Score = 89.8 bits (48), Expect = 2e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60
||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |||
Sbjct 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAATCTGAAAGTAACCAAGTCCCGTCCAAG 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20718484827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5