BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23201.1 Length=567 Score E Sequences producing significant alignments: (Bits) Value Ahg921360 jgi|Araly1|921360|scaffold_102641.1 715 0.0 Ahg921366 jgi|Araly1|921366|scaffold_102647.1 416 8e-116 Ahg946357 jgi|Araly1|946357|scaffold_702586.1 396 1e-109 Ahg354904 jgi|Araly1|354904|fgenesh1_pg.C_scaffold_7002077 89.8 2e-17 > Ahg921360 jgi|Araly1|921360|scaffold_102641.1 Length=622 Score = 715 bits (387), Expect = 0.0 Identities = 504/561 (90%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 30 ATGTCATCCACGGATCTCAAACCGGAATCTAAATCTGAAAATAACCAAGTCTCGTCGAAG 89 Query 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAATC 119 ||||| |||||| ||||| | || ||||||||||||||| ||||||||||||||||||| Sbjct 90 TCGAAGGCAGTGAAAGGTCCATTA-CATGTGTTCATGAAAAAAGGTGGTTGCGAAGAATC 148 Query 120 ATATACCGCTTTTGTAGGTCGTGATGTGCAGAAAGAT-ACGTGTAGGGAAGCCTATTCGA 178 |||||| |||| ||||||| |||||| |||||||||| | |||||||||||||| ||| | Sbjct 149 ATATACAGCTTGTGTAGGTTGTGATGCGCAGAAAGATGA-GTGTAGGGAAGCCTTTTCAA 207 Query 179 TGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGCGATTTCTCGCGTTGCAGA 238 || | |||||||||||||| |||||||||||||||||||||| || |||||||| ||||| Sbjct 208 TGCTTGAAAAGTGTATGAAAGCTCGCTCTGATTACTTTGAGCCATATCTCGCGTGGCAGA 267 Query 239 ACGCTAGGGCTGAAGTGATGCAGAGAGAAATCGATGCCTTCCTCCATGCGAAACCAAAGG 298 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 268 ACGCTAGGGCTGAAGTGATGCTGAGAGAAATCGATGCCTTCCTCCATGCGAAACCAAAGG 327 Query 299 ACAGAGACGAGATGTTTACCAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCATTTATGG 358 | |||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| Sbjct 328 ATAGAGACGAGATGTTTACCAAGTTCATGATAAGAGGTGATTGCAAAGAAGCTTTTATGG 387 Query 359 CTTGGATTGACTTCTGCAAAGAATCTAGGAAGAACAATAAAAGTTGTCGTCATA-ATCCT 417 |||||| |||||||||||||||| ||| |||||| ||||||||||||| ||||| | || Sbjct 388 CTTGGAATGACTTCTGCAAAGAAGCTAAGAAGAATAATAAAAGTTGTCTTCATACA-CCA 446 Query 418 GCCATGGACACCATGCTCAAGTGTGTGAAGGCTCACTCTGATTACTATCATCCGCTTCTC 477 ||||||||||| || |||||||| |||||||||| |||||||||||||| ||||||||| Sbjct 447 ACCATGGACACCTTGTTCAAGTGTATGAAGGCTCATTCTGATTACTATCACCCGCTTCTC 506 Query 478 ACGGTATTCAAAGCTGGTGAAGAACATCATAAAAAGGAGATCGACGCCTTGAATATGAGA 537 |||||||||||| || |||||||||| |||||| |||||| | |||||| ||| ||| Sbjct 507 ACGGTATTCAAAAATGCTGAAGAACATTTTAAAAAAGAGATCAAAGCCTTGGATACGAGG 566 Query 538 GAGCAAACTGAAGCTGATGCT 558 ||| | |||||||||||||| Sbjct 567 GAGGGAGCTGAAGCTGATGCT 587 > Ahg921366 jgi|Araly1|921366|scaffold_102647.1 Length=613 Score = 416 bits (225), Expect = 8e-116 Identities = 472/585 (81%), Gaps = 42/585 (7%) Strand=Plus/Plus Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60 |||||||| ||||||||||||| |||||||||| ||||||||||||||||| | | || Sbjct 33 ATGTCATCTACGGATCTGAAACAGGAATCCAAATCTGAAAATAACCAAGTC-C--C-AA- 87 Query 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAA-T 118 || ||| |||| ||| |||| || || | ||| |||||| |||||||||||||| || | Sbjct 88 CC-AAGGAAGTGGGAGATCGATTA-CAAGAGTTTATGAAAAAAGGTGGTTGCGAA-AATT 144 Query 119 CATATACCGCTTTTGTAGGTCGTGATGT-GCAGAAAGAT-ACGTGTAGGGAAGCCTATTC 176 |||||| |||| ||||||| ||||| | || | ||||| | ||||| |||||||||||| Sbjct 145 CATATATAGCTTGTGTAGGTTGTGAT-TCGCGGGAAGATGA-GTGTACGGAAGCCTATTC 202 Query 177 GATGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAG-CGATTTCTCGCGTTGC 235 ||| |||||||||||||||||||||||||||||||||||||| || | ||||||| || Sbjct 203 AATGCTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGACG-TATCTCGCGCTGA 261 Query 236 AGAACGCTAGGGCTGAAGTGATG-C-AGAGAGAAATCGATGCCTTCCTCCATGCGAAACC 293 |||||||||| |||||||||||| | || |||| |||| | |||||||||||||||||| Sbjct 262 AGAACGCTAGTGCTGAAGTGATGGCTAGGGAGA--TCGAAGTCTTCCTCCATGCGAAACC 319 Query 294 AAAGGACAGAGACGAGATGTTTAC-CAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCAT 352 ||| |||||||||||| |||| | ||| ||||| |||||||||| |||||||||||| | Sbjct 320 AAATGACAGAGACGAGTTGTT-AGGCAAATTCATTACAAGAGGTGGTTGCAAAGAAGCTT 378 Query 353 TTATGGCTTGGATTGACTTCTG-CAAAGAATCTAGGAAGAACAATAAAAGT-TGTCGTCA 410 |||||||||||| || | | | ||||| | | ||||||||| |||| | | | | Sbjct 379 TTATGGCTTGGAGGGA-TAGTTACGAAGAAGCCAAGAAGAACAAGGGAAGTCT-T--T-A 433 Query 411 TA-ATCCTGCCATGGACACCATGCTCAA-GTGTGTG-AAGGCTCACTCTGATTACTATCA 467 || | |||||| || ||||| || |||| |||| || ||| ||||||||||||||||||| Sbjct 434 TACA-CCTGCCTTGAACACCTTG-TCAAAGTGTATGGAAG-CTCACTCTGATTACTATCA 490 Query 468 TCCGCTTCTCACGGTA-TTCAAAGCTGGTGAAGAACA-TCATAAAAAGGAG---ATCGAC 522 ||||||||| | || || ||| | ||||||||| | ||| |||||| || | | Sbjct 491 GCCGCTTCTCGCAGTGGTTAAAAATTA-TGAAGAACACT-ATAGTAAGGAGCGTATTGCC 548 Query 523 GCCTTGAATATGAGAGAGCAAACTGAAGCTGATGCTAAGGGATGA 567 ||||||| | | |||||| |||||| ||| |||||||||||| Sbjct 549 TTCTTGAATGCGTGGGAGCAAGCTGAAGATGAGGCTAAGGGATGA 593 > Ahg946357 jgi|Araly1|946357|scaffold_702586.1 Length=607 Score = 396 bits (214), Expect = 1e-109 Identities = 430/529 (81%), Gaps = 35/529 (7%) Strand=Plus/Plus Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60 |||||||| ||||||||||||| |||||||||| ||||||||||||||||| | | || Sbjct 33 ATGTCATCTACGGATCTGAAACAGGAATCCAAATCTGAAAATAACCAAGTC-C--C-AA- 87 Query 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAA-T 118 || ||| |||| ||| |||| || || | ||| |||||| |||||||||||||| || | Sbjct 88 CC-AAGGAAGTGGGAGATCGATTA-CAAGAGTTTATGAAAAAAGGTGGTTGCGAA-AATT 144 Query 119 CATATACCGCTTTTGTAGGTCGTGATGT-GCAGAAAGAT-ACGTGTAGGGAAGCCTATTC 176 |||||| |||| ||||||| ||||| | || | ||||| | ||||| |||||||||||| Sbjct 145 CATATATAGCTTGTGTAGGTTGTGAT-TCGCGGGAAGATGA-GTGTACGGAAGCCTATTC 202 Query 177 GATGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAG-CGATTTCTCGCGTTGC 235 ||| |||||||||||||||||||||||||||||||||||||| || | ||||||| || Sbjct 203 AATGCTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGACG-TATCTCGCGCTGA 261 Query 236 AGAACGCTAGGGCTGAAGTGATG-C-AGAGAGAAATCGATGCCTTCCTCCATGCGAAACC 293 |||||||||| |||||||||||| | || |||| |||| | |||||||||||||||||| Sbjct 262 AGAACGCTAGTGCTGAAGTGATGGCTAGGGAGA--TCGAAGTCTTCCTCCATGCGAAACC 319 Query 294 AAAGGACAGAGACGAGATGTTTAC-CAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCAT 352 ||| |||||||||||| |||| | ||| ||||| |||||||||| |||||||||||| | Sbjct 320 AAATGACAGAGACGAGTTGTT-AGGCAAATTCATTACAAGAGGTGGTTGCAAAGAAGCTT 378 Query 353 TTATGGCTTGGATTGACTTCTG-CAAAGAATCTAGGAAGAACAATAAAAGT-TGTCGTCA 410 |||||||||||| || | | | ||||| | | ||||||||| |||| | | | | Sbjct 379 TTATGGCTTGGAGGGA-TAGTTACGAAGAAGCCAAGAAGAACAAGGGAAGTCT-T--T-A 433 Query 411 TA-ATCCTGCCATGGACACCATGCTCAA-GTGTGTGAAGGCTCACTCTGATTACTATCAT 468 || | |||||| || ||||| || |||| |||| || |||||||||||||||||||||| Sbjct 434 TACA-CCTGCCTTGAACACCTTG-TCAAAGTGTATGGAGGCTCACTCTGATTACTATCAG 491 Query 469 CCGCTTCTCACGGTATTCAAAGCTGGTGAAGAACA-TCATAAAAAGGAG 516 || ||||| | || ||||| | ||||||||| | ||| |||||| Sbjct 492 CCATTTCTCGCAGTGGTCAAAAATTATGAAGAACACT-ATAGTAAGGAG 539 > Ahg354904 jgi|Araly1|354904|fgenesh1_pg.C_scaffold_7002077 Length=501 Score = 89.8 bits (48), Expect = 2e-17 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60 ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||| Sbjct 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAATCTGAAAGTAACCAAGTCCCGTCCAAG 60 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20718484827 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5