BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23210.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335563 jgi|Araly1|335563|fgenesh1_pg.C_scaffold_1002128 2335 0.0
Ahg926401 jgi|Araly1|926401|scaffold_201962.1 1227 0.0
> Ahg335563 jgi|Araly1|335563|fgenesh1_pg.C_scaffold_1002128
Length=1470
Score = 2335 bits (1264), Expect = 0.0
Identities = 1401/1468 (95%), Gaps = 6/1468 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGGAAAATCCTTTAT-GACTCCGGCGATTATGCTCGCCATGCTTCTCCTTATTTC 59
||||||||||| ||| | || | ||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGCGGGAAACTCCCTAATCG-CTCCGGCGATTATGCTCGCGTTGCTTCTCCTTATTTC 59
Query 60 ACCGGAGACT-TACGCCGGTCACGACTACCGCGACGCTCTCCGCAAGAGCATCCTCTTCT 118
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 60 ACCGGAGA-TCTACGCCGGTCATGACTACCGCGACGCTCTCCGCAAGAGCATCCTTTTCT 118
Query 119 TCGAAGGTCAACGCTCCGGCAAACTTCCACCAGATCAACGCCTTAAGTGGCGCCGTGACT 178
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 119 TCGAAGGTCAACGCTCCGGTAAGCTTCCACCAGATCAACGCCTTAAATGGCGCCGTGACT 178
Query 179 CCGCCTTACGCGACGGTTCTTCCGCCGGCGTGGATTTAACGGGAGGGTACTACGACGCTG 238
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CCGCCTTACGCGACGGTTCCTCCGCCGGCGTGGATTTAACGGGAGGCTACTACGACGCTG 238
Query 239 GAGACAACGTAAAATTCGGATTCCCGATGGCGTTCACGACGACAATGATGTCATGGAGCG 298
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGATAACGTAAAATTCGGATTTCCGATGGCGTTCACGACGACAATGATGTCATGGAGCG 298
Query 299 TCATAGATTTCGGTAAAACAATGGGACCGGAGCTTGAAAACGCCGTGAAAGCTATCAAAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCATAGATTTCGGTAAAACAATGGGACCGGAGCTTGAAAACGCCGTGAAAGCTATCAAAT 358
Query 359 GGGGAACGGATTATCTCATGAAAGCGACTCAGATTCCCGACGTCGTCTTTGTCCAAGTCG 418
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 GGGGAACAGATTATCTCATGAAAGCGACTCAGATTCCCGGCGTCGTCTTTGTCCAAGTCG 418
Query 419 GAGACGCTTACTCCGATCATAATTGTTGGGAACGCCCCGAGGACATGGACACACTACGAA 478
|||||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||
Sbjct 419 GAGACGCTTACTCCGACCACAATTGTTGGGAACGTCCCGAGGACATGGACACGCTTCGAA 478
Query 479 CCGTTTATAAAATCGATAAAGACCATTCTGGTTCTGAAGTCGCCGGAGAAACCGCCGCCG 538
| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 479 CGGTTTATAAAATCGATAAAGACCATCCTGGTTCCAAAGTCGCCGGAGAAACCGCAGCCG 538
Query 539 CACTAGCAGCCGCATCAATCGTGTTTGAAAAACGCGATCCAG-TATACTCCAAAATGCTC 597
||||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||
Sbjct 539 CACTAGCCGCCGCATCGATCGTGTTTGAAAAACGCGATCC-GATATACTCCAAAATGCTC 597
Query 598 CTGGACCGAGCAACAAGGGTGTTTGCGTTCGCCCAAAAGTACCGAGGAGCGTACAGTGAT 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CTCGACCGAGCAACAAGGGTGTTTGCGTTCGCCCAAAAGTACCGAGGAGCGTACAGTGAT 657
Query 658 AGTCTTTATCAAGCAGTGTGTCCTTTTTACTGCGATTTCAACGGTTACGAGGATGAGTTG 717
|||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 AGTCTTTACCAAGTAGTGTGTCCTTTTTACTGCGATTTCAACGGTTATGAGGATGAGTTG 717
Query 718 CTATGGGGAGCGGCTTGGCTACATAAAGCGTCGAAGAAACGAGTGTATAGAGAGTTCATT 777
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTTGGGGAGCGGCTTGGCTACACAAAGCGTCGAAGAAACGAGTGTATAGAGAGTTCATT 777
Query 778 GTGAAGAACCAAGTTATTCTAAGAGCTGGAGATACGATCCACGAATTTGGTTGGGATAAT 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GTGAAGAACCAAGTTATTCTAAGAGCTGGAGATACGATCCACGAGTTTGGTTGGGATAAT 837
Query 838 AAACATGCCGGGATTAATGTCTTAGTCTCCAAAATGGTATTGATGGGAAAAGCAGAGTAT 897
|||||||| ||||||||||||||| |||||||||||||| | |||||||||||||| |||
Sbjct 838 AAACATGCTGGGATTAATGTCTTAATCTCCAAAATGGTACTAATGGGAAAAGCAGATTAT 897
Query 898 TTTCAGAGTTTTAAGCAAAACGCTGATGAGTTTATCTGTTCTTTATTGCCTGGAATTTCT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTCAGAGTTTTAAGCAAAACGCTGATGAGTTTATCTGTTCTTTATTGCCTGGAATTTCT 957
Query 958 CACCCTCAAGTCCAATACTCACAAGGAGGATTATTAGTGAAGAGTGGAGGAAGTAATATG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CACCCTCAAGTCCAATACTCACAAGGAGGATTATTAGTGAAGAGTGGAGGAAGTAATATG 1017
Query 1018 CAACATGTAACATCTTTGTCTTTTTTGTTACTAACATACTCTAATTACCTAAGCCACGCA 1077
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1018 CAGCATGTAACATCTTTGTCGTTTTTGTTACTAACATACTCTAATTACCTAAGTCACGCC 1077
Query 1078 AATAAGGTGGTGCCATGTGGCGAATTTACAGCTTCTCCTGCTCTTCTCCGTCAAGTCGCC 1137
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1078 AATAAGGTGGTGCCATGTGGCGAATTCATAGCTTCTCCTACTCTTCTCCGTCAAGTCGCC 1137
Query 1138 AAGCGTCAGGTGGACTACATACTAGGAGATAATCCAATGAAAATGTCGTACATGGTTGGG 1197
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 AAGCGTCAGGTGGACTACTTACTAGGAGATAATCCGATGAAAATGTCGTACATGGTTGGG 1197
Query 1198 TATGGTTCGAGGTTTCCACAGAAGATTCATCATCGTGGCAGCTCGGTTCCTTCAGTTGTG 1257
||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||
Sbjct 1198 TATGGTTCGAGGTTTCCGCAGATGATTCACCATCGTGGCAGCTCGGTTCCTTCAGTCGTG 1257
Query 1258 GACCATCCTGATCGTATAGGGTGCAAAGACGGATCTCGTTATTTCTTCAGCAATAATCCT 1317
|||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 1258 GACCATCCTGGTCGTATAGGGTGCAAAGACGGTTCTCGTTACTTCCTCAGCAATAATCCT 1317
Query 1318 AATCCTAATTTGCTAATTGGCGCCGTCGTTGGTGGGCCTAATATCACCGACGATTTTCCT 1377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1318 AATCCTAATTTGCTAATTGGCGCCGTCGTTGGTGGGCCTAATATCACTGACGATTTTCCT 1377
Query 1378 GATTCGAGACCTTACTTTCAGCTGACTGAGCCCACTACTTATATCAACGCACCTCTTTTG 1437
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1378 GATTCGAGACCTTACTTTCAGCTGACTGAGCCCACGACTTATATCAACGCACCTCTTTTG 1437
Query 1438 GGCCTACTTGGTTATTTCTCGGCCCATT 1465
||||| |||||||| |||||||||||||
Sbjct 1438 GGCCTTCTTGGTTACTTCTCGGCCCATT 1465
> Ahg926401 jgi|Araly1|926401|scaffold_201962.1
Length=1522
Score = 1227 bits (664), Expect = 0.0
Identities = 1224/1491 (82%), Gaps = 52/1491 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGGAAAATCCTTTA-TGACTCCGGCGATTATGCTCGCCATGCTTCTCCTTATTTC 59
|||||| |||||||| | | | | |||| |||| |||||||| | |||| ||| ||||
Sbjct 24 ATGGCGCGAAAATCCCTAATTTTC-CCGGTGATTTTGCTCGCC--G-TTCTTCTTTTTTC 79
Query 60 ACCGGAGACTTA---CGCCGGTCACGACTACCGCGACGCTCTCCGCAAGAGCATCCTCTT 116
||| || ||| |||||| ||||| ||||||||||||||||| || ||||| |||||
Sbjct 80 TCCGCCGATTTACTCCGCCGGACACGATTACCGCGACGCTCTCCGTAAAAGCATTCTCTT 139
Query 117 CTTCGAAGGTCAACGCTCCGGCAAACTTCCACCAGATCAACGCCTT-AAGTGGCGCCGTG 175
||||||||||||||| ||||| ||||| || ||||||||||| ||| || ||||||||||
Sbjct 140 CTTCGAAGGTCAACGTTCCGGTAAACTCCCTCCAGATCAACG-CTTAAAATGGCGCCGTG 198
Query 176 ACTCCGCCTTACGCGACGGTTCTTCCGCCGGCGTGGATTTAACGGGAGGGTACTACGACG 235
|||| || |||||||||||||| ||||||||||| |||||| | ||||| ||||||||||
Sbjct 199 ACTCAGCATTACGCGACGGTTCCTCCGCCGGCGTTGATTTATCCGGAGGTTACTACGACG 258
Query 236 CTGGAGACAACGTAAAATTCGGATTCCCGATGGCGTTCACGACGACAATGATGTCATGGA 295
| ||||||||| | |||||||| || |||||||| ||||| || || ||| | |||||||
Sbjct 259 CCGGAGACAACATCAAATTCGGTTTTCCGATGGCCTTCACAACAACGATGCTTTCATGGA 318
Query 296 GCGTCATAGATTTCGGTAAAACAATGGGACCGGAGCTTGAAAACGCCGTGAAAGCTATCA 355
| | || |||||||||||||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 319 GTATAATCGATTTCGGTAAAACCATGGGACCGGAGCTTAAAAACGCCGTGAAAGCTGTCA 378
Query 356 AATGGGGAACGGATTATCTCATGAAAGCGAC-TCAGATTCCC-GACGTCGTCTTT-GTCC 412
|||||||||| ||||| ||| | |||||||| | ||||||| || || || ||| ||||
Sbjct 379 AATGGGGAACAGATTACCTCCTAAAAGCGACGGC-GATTCCCGGA-GTAGT-TTTCGTCC 435
Query 413 AAGTCGGAGACGCTTACTCCGATCATAATTGTTGGGAACGCCCCGAGGACATGGACACAC 472
|||||||||||||||||||||||||||| ||||||||| | || || || ||||||||||
Sbjct 436 AAGTCGGAGACGCTTACTCCGATCATAACTGTTGGGAAAGACCTGAAGATATGGACACAC 495
Query 473 TACGAACCGTTTATAAAATCGATAAAGAC-CATTCTGGTTCTGAAGTCGCCGGAGAAACC 531
| || || ||||| |||||||||| || | ||| |||||||||| |||||||| ||||||
Sbjct 496 TTCGTACTGTTTACAAAATCGATAGAG-CTCATCCTGGTTCTGACGTCGCCGGTGAAACC 554
Query 532 GCCGCCGCACTAGCAGCCGCATCAATCGTGTTTGA-AAAACGCGATCCAGT-ATACTCCA 589
|| ||||| |||| ||||| |||||||| ||| | |||||||||||| | || ||||
Sbjct 555 GCAGCCGCTTTAGCCGCCGCTTCAATCGT-TTTTAGAAAACGCGATCC-TTCTTATTCCA 612
Query 590 AAATGCTCCTGGACCGAGCAACAAGGGTGTTTGCGTTCGCCCAAAAG-TACCGAGGAGCG 648
| | || || ||||| || || || || || ||||| | | || || || || || |||
Sbjct 613 GACTTCTTCTTGACCGTGCCACTAGAGTATTCGCGTTTG-CTAACAGATATCGCGGCGCG 671
Query 649 TACAGTGATAGTCTTTATCAAGCAGTGTGTCCTTTTTACTGCGATTTCAACGGTTACGAG 708
|||||| | ||||| || || || || |||||||||||||| ||||||||||||||| ||
Sbjct 672 TACAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG 731
Query 709 GATGAGTTGCTATGGGGAGCGGCTTGGCTACATAAAGCGTCGAAGAAACGAGTGTATAGA 768
|||||||| || ||||||||||| |||||||| ||||| |||| |||||||| ||| |||
Sbjct 732 GATGAGTTACTGTGGGGAGCGGCGTGGCTACACAAAGCCTCGAGGAAACGAGCGTACAGA 791
Query 769 GAGTTCATTGTGAAGAACCAAGTTATTC-TAAGAGCTGGAGATACGATCCACGAATTTGG 827
|| ||||||||||||||| | || |||| |||| ||||||||||| || | || |||||
Sbjct 792 GAATTCATTGTGAAGAACGAGGTGATTCTTAAG-GCTGGAGATACCATTAATGAGTTTGG 850
Query 828 TTGGGATAATAAACATGCCGGGATTAATGTCTTAGTCTCCAA--AATGGTATTGATGGGA 885
|||||| ||||| ||||| ||||||||||||||| ||||||| || || || ||||||
Sbjct 851 TTGGGACAATAAGCATGCTGGGATTAATGTCTTAATCTCCAAGGAA--GTGTTAATGGGA 908
Query 886 AAAGCAGAGTATTTTCAGAGT-TTT-AAGCAAAACGCTGATGAGTTTATCTGTTCTTTAT 943
||||| ||||||||| |||| ||| ||||||||||| |||| ||||||||||||| |||
Sbjct 909 AAAGCTGAGTATTTT--GAGTCTTTCAAGCAAAACGCAGATGGGTTTATCTGTTCTATAT 966
Query 944 TGCCTGGAATTTCTCACCCTCAAGTCCAATACTCACAAGGAGGATTATTAGTGAAGAGTG 1003
|||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||| ||
Sbjct 967 TGCCTGGAATTTCTCACCCTCAAGTCCAATACTCTCGAGGAGGGTTACTAGTGAAGACTG 1026
Query 1004 GAGGAAGTAATATGCAACATGTAACATCTTTGTCTTTTTTGTTACTAACATACTCTAATT 1063
|||| ||||| ||||||||||||||||| | ||||| | || | | ||||||||||
Sbjct 1027 GAGGGAGTAACATGCAACATGTAACATCGCTATCTTTCCTCCTATTGGCTTACTCTAATT 1086
Query 1064 ACCTAAGCCACGC-AAATAAGGTGGTGCCATGTGGCGAATTTACAGCTTCTCC-TGCTCT 1121
| || ||||| || ||| ||||| ||||| ||||||||||| || ||||| || | ||||
Sbjct 1087 ATCTGAGCCATGCCAAA-AAGGTTGTGCCTTGTGGCGAATTAACTGCTTCCCCAT-CTCT 1144
Query 1122 TCTCCGTCAAGTCGCCAAGCGTCAGGTGGACTACATACTAGGAGATAATCCAATGAAAAT 1181
||||||||| ||||||||||||||||||| ||||| ||||||| || || ||| | |
Sbjct 1145 CCTCCGTCAAATCGCCAAGCGTCAGGTGGATTACATTTTAGGAGACAACCCGATGGGATT 1204
Query 1182 GTCGTACATGGTTGGGTATGGTTCGAG-GTTTCCACAGAAG-ATTCATCATCGTGGCAGC 1239
||| ||||||||||| || ||| | | |||||||| | || |||||||| |||||||||
Sbjct 1205 GTCTTACATGGTTGGATACGGT-CAAAAGTTTCCAC-GTAGGATTCATCACCGTGGCAGC 1262
Query 1240 TCGGTTCCTTCAGTTGTG-GACCATCCTGATCG-TATAGGGTGCAAAGACGGATCTCGTT 1297
||||||||||| ||| | | |||||| || | |||||| |||||||| || ||||| |
Sbjct 1263 TCGGTTCCTTCGGTT-TCAGCCCATCC-GAGCCATATAGGATGCAAAGAAGGCTCTCGCT 1320
Query 1298 ATTTCTTCAGCA-ATAATCCTAATCCTAA--TTTGCTAATTGGCGCCGTCGTTGGTGGGC 1354
||||| | ||| | |||||||| || || ||| | |||| || || || ||||| |
Sbjct 1321 ATTTCCTAAGCCCA-AATCCTAACCCAAACCTTT--TGGTTGGTGCTGTAGTCGGTGGAC 1377
Query 1355 CTAATATCACCGACGATTTTCCTGATTCGAGACCTTACTTTCAGCTGACTGAGCCCACTA 1414
||||| ||||||| | |||||| ||||| |||||||||||||| | | | |||||||| |
Sbjct 1378 CTAATGTCACCGATGCTTTTCCAGATTCAAGACCTTACTTTCAACAGTCCGAGCCCACGA 1437
Query 1415 CTTATATCAACGCACCTCTTTTGGGCCTACTTGGTTATTTCTCGGCCCATT 1465
|||| ||||| ||||| || | ||||| || ||||| ||||| |||||||
Sbjct 1438 CTTACATCAATGCACCACTCGTCGGCCTTCTCGGTTACTTCTCCGCCCATT 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5