BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23220.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472580 jgi|Araly1|472580|fgenesh2_kg.1__2534__AT1G23220.1 1009 0.0
> Ahg472580 jgi|Araly1|472580|fgenesh2_kg.1__2534__AT1G23220.1
Length=823
Score = 1009 bits (546), Expect = 0.0
Identities = 765/861 (89%), Gaps = 53/861 (6%)
Strand=Plus/Plus
Query 3 AAGAACGCTATTTTGTCTCCTCCACGCAATTACCTCTTCTCACTCTCAGACATTTTGTCA 62
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1 AAGAACGCTATTTTGTCTCCTCCACGCAATTACCTCTTCT-TCTCTCAGACATTTCGTCA 59
Query 63 AACAGATGGTGCTCGTTTCTGAATCAGCTTAAGAACTAACAAGGAGACAGACACTAAGCT 122
||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 60 AACAGATGGTGCTCG-TTCTGAAACAGCTTACGAACTAACAAGGAGACAGACACTAAGCT 118
Query 123 TGGTTTTTCTCTCCGATTAGACGGAGGAAAAAGTGAAAACGAGGGGCTT-AGACGAGTGA 181
||||| ||||||||||||||| || |||||||| |||||||| |||||| ||||||||||
Sbjct 119 TGGTTGTTCTCTCCGATTAGAAGGGGGAAAAAGCGAAAACGA-GGGCTTGAGACGAGTGA 177
Query 182 TGTGATAGAGATGGAAGGAGTTGAGCTAGAATTAGAAAGAAGAAGCAAGTTCTTGAACAG 241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 178 TGTGATAGAGATGGAAGGAGTTGAGCTAGAATTAGAGAGAAGAAGCAAGTTCTTGAACAG 237
Query 242 TTTGATACAGAAGAAGAAGGCTAAAGAACAGCAAGATCAGAAAGATGAGTTCAATGTTCG 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTGATACAGAAGAAGAAGGCTAAAGAACAGCAAGATCAGAAAGATGAGTTCAATGTTCG 297
Query 302 TGTTAGGGCTTCAGATATGCCTTTGCCTCAACAGAACAGAGCCTTTAGTTTGTCGCGTGA 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTTAGGGCTTCAGATATGCCTTTGCCTCAACAGAACAGAGCCTTTAGTTTGTCGCGTGA 357
Query 362 GATTTTGAATGCTACTCCAGGGAAGGCTGATAACAAAAGACTCGCTCATGCCCTAAAAAA 421
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 GATTTTGAATGCTACTCCTGGGAAGGCTGATAACAAAAGACTCGCTCTTGCCCTAAAAAA 417
Query 422 GGACTTCGATTCAGCCTACGGCCCGGCATGGCACTGCATTGTTGGAACAAGCTTTGGTTC 481
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 GGAATTTGATTCAGCCTACGGCCCGGCATGGCACTGCATTGTTGGGACAAGCTTTGGTTC 477
Query 482 ATACGTGACTCATTCCACAGGAGGATTCCTATATTTTCAGATCGACAAAGTTTACGTTCT 541
||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 478 ATACGTGACTCATTCCATTGGAGGATTCATATACTTTCAAATCGACAAAGTTTACGTTCT 537
Query 542 TCTCTTCAAGACTGCCGTGGAGCCGTTAGATCAAAAATGAGATAAAACGTTGATGATCAG 601
|||||||||||| || |||||||||||||||||||||||||| | | | | ||
Sbjct 538 TCTCTTCAAGACCGCAGTGGAGCCGTTAGATCAAAAATGAGA-A-----T--A--A--AG 585
Query 602 AGCATCTTCAATTTAATCCTTTTCTTTTAGAATTCTCTGTCTTGTATCC-C-ACA----- 654
||||||||||| |||| || ||| |||||||||||| ||||||||| | |||
Sbjct 586 --CATCTTCAATT-AATCATTCCCTTCTAGAATTCTCTGCCTTGTATCCACCACACTCTT 642
Query 655 ATGTAATTCTGCCTAAGACAAAATCTTTGTGGCTCCTATTGTGTAATTAGAAGTCATCTT 714
||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 643 ATGTAATTCTGCCTAAGTCAAAATCTTTGTTGCTCCTATTTTGTAATTAGAAGTGATCTT 702
Query 715 CTCTACTGTGAATCGTTTCAACTTCACAATGCAAAATATTGTTCTTCTCTTTCTCAAATT 774
|| | | |||||||||||||||||||||| ||||| |||| |||| ||
Sbjct 703 -------GT---T--T--CAACTTCACAATGCAAAATATTCTTCTTTTCTT-CTCATCTT 747
Query 775 -CT-AAt-t-ttgtttt-tttcgttgttgtgttgt-tgttgttgttgACATTTTCTTCT- 827
|| || | || || |||| || | ||||| |||| | ||||||||||||||||
Sbjct 748 TCTCAAAATCTTAACTTCTTTC-TT-TC-TGTTGAGTGTT-T-GTTGACATTTTCTTCTT 802
Query 828 CTTCAAAAGAGCTTTAAACCC 848
| ||||||||||| |||||||
Sbjct 803 CCTCAAAAGAGCTCTAAACCC 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5