BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23240.1
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472583 jgi|Araly1|472583|fgenesh2_kg.1__2537__AT1G23240.1 1114 0.0
> Ahg472583 jgi|Araly1|472583|fgenesh2_kg.1__2537__AT1G23240.1
Length=868
Score = 1114 bits (603), Expect = 0.0
Identities = 807/897 (90%), Gaps = 47/897 (5%)
Strand=Plus/Plus
Query 58 ATCCTAAACTAATAAGAAAGCTTGTGATAATTTCAGTGTTCTCACTCTCATCTCCAATCT 117
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 2 ATCCTAAACTAATAAGAAAGATTGTGATAATTTCAGTGTTCTGA--GTCATCTCCAATCT 59
Query 118 GTGATATATTTCTCATGTCTCATCAGACAGTAGCGCTAGCCTCTAAGGCTAAGTCTCCTA 177
||||||||||||||||||||||||| |||||| |||| | | | || ||||| |
Sbjct 60 CTGATATATTTCTCATGTCTCATCAGGCAGTAGAGCTA---T-T-A-TCTGTTTCTCCCA 113
Query 178 AA-CC-CA---AAA-GAGGAAAGTTAGATAAGGAAA-AAATGACTGCATTGGAGAAACAT 230
|| || | ||| ||||||| | |||||| |||| || ||||||||||||||||||||
Sbjct 114 AATCCAAAGGTAAAGGAGGAAAATCAGATAA-GAAAGAATTGACTGCATTGGAGAAACAT 172
Query 231 GTTTCCTTCTTCGACAGGAACAAAGACGGCACCGTTTATCCATGGGAAACCTACCAAGGA 290
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GTGTCCTTCTTCGACAGGAACAAAGACGGCACCGTTTATCCATGGGAAACCTACCAAGGA 232
Query 291 TTTAGAGCGCTCGGGACAGGGCGTCTTTTGGCGGCTTTTGTTGCTATATTCATCAACATG 350
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 233 TTTAGAGCGCTTGGGACAGGGCGTCTTTTGGCGGCTTTTGTTGCTATCTTCATCAACATG 292
Query 351 GGACTCAG-CAAGAAAACTCGTCCGGGAAAGGGATTCTCGCCGTTGTTTCCAATAGACGT 409
|||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 293 GGACTCAGCCAA-AAAACTCGTCCGGGAAAGAGATTTTCGCCGTTGTTTCCAATAGACGT 351
Query 410 GAAGAATAGTCACCTTTGCATGCACGGTAGTGACACCGACGTCTATGACGATGACGGAAG 469
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 352 GAAGAATAGTCACCTTTGCATGCACGGTAGTGACACCGACGTCTACGACGATGACGGAAG 411
Query 470 ATTTGTGGAATCAAAATTCGAGGAAATATTCAACAAGCATGCTCGCACACATAAAGATGC 529
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 412 ATTTGTGGAATCAAAATTCGAGGAGATATTCAAGAAGCATGCTCGCACACATAAAGGTGC 471
Query 530 TCTCACTGCAGAGGAAATTCAAAAAATGCTTAAGACTAACAGGGATCCTTTCGATATCAC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TCTCACTGCAGAGGAAATTCAAAAAATGCTTAAGACTAACAGGGATCCTTTCGATATCAC 531
Query 590 AGGATGGCTTTCAGATTATGGAGAATGGAAAATATTACATA-CGTTAGCTCAA-GACAAA 647
||||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||
Sbjct 532 AGGATGGCTTTCAGATTATGGAGAATGGAAAATATTACATAAC-TTAGC-CAAAGACAAA 589
Query 648 AATGGTTTGTTATCGGAAAAGA--GCGTCAGGGCCATCTACGATGGTAGCCTTTTCCACC 705
||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |
Sbjct 590 AATGGTTTGTTGTC--AAAAGATAGCGTCAGGGACATCTACGATGGTAGCCTTTTCGAAA 647
Query 706 AACTGGAGaaaaaaaGATCTTCTTCTTCTTCTCGTGGCAAGAAACAAAAACTACCATAAA 765
||||||||||||||| || | | |||||||||||||||||||||||||||||||| ||||
Sbjct 648 AACTGGAGAAAAAAA-AT-T-CATCTTCTTCTCGTGGCAAGAAACAAAAACTACCTTAAA 704
Query 766 TGTTTACATGAATCTTCTTATATTATTATGTGG-AGATCACATAACATT-CTTGGTTTAT 823
||||||| |||||||||||||||||||||| || |||||| |||| ||| | ||||||||
Sbjct 705 TGTTTACGTGAATCTTCTTATATTATTATGGGGGAGATCAAATAA-ATTTCCTGGTTTAT 763
Query 824 AATTATATAATTTTGT--C-AAATAACTTTTGTAATGAATAATTACATAGATCAAACACT 880
||||||||||||| | | ||||||| ||||||||||||| || || | | | |
Sbjct 764 AATTATATAATTTGGAAACCAAATAACCTTTGTAATGAATA-TT---TA-A-CTA----T 813
Query 881 CTTTAAATAATTATTGTGTATATTGaaaaaaaaaaaCTTATCAAAGTATACTTCATT 937
|| | |||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 814 -TT-ATATAATTATTGTGTATATTGACAAAAAAACACTTATTAAAGTATACTTCATT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34996837806
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5