BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23260.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921378 jgi|Araly1|921378|scaffold_102659.1 857 0.0
Ahg476195 jgi|Araly1|476195|fgenesh2_kg.2__1325__AT1G70660.1 542 2e-153
> Ahg921378 jgi|Araly1|921378|scaffold_102659.1
Length=519
Score = 857 bits (464), Expect = 0.0
Identities = 499/516 (97%), Gaps = 2/516 (0%)
Strand=Plus/Plus
Query 97 TTCCTGAGATTCATCGGCGATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTT 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTCCTGAGATTCATCGGCGATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTT 63
Query 157 TAGATTGTTGGAAGAGCTTGAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTTAGCTA 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 64 TAGATTGTTGGAAGAGCTTGAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTAAGCTA 123
Query 217 TGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCC 183
Query 277 TCCTAATACTGCATATGAAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGTAAGGAGTA 336
||| ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 184 TCCAAATACTGCATACGAAGGGAAAATCTTCCAGCTGAAGCTGTTCTGTGGTAAGGAGTA 243
Query 337 CCCTGAAAGTCCACCGACTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCC 396
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCCTGAAAGTCCACCAAGTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCC 303
Query 397 AGAAACTGGAGTGGTTGAACCGAGTCTCTTCCCTATGCTCACTAACTGGCGGCGAGAATA 456
|||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 304 AGAATCTGGAGTGGTTGAACCGAGTCTCTTCCCTATGCTCACTAATTGGCGGCGCGAATA 363
Query 457 TACAATGGAGGACATACTGGTTAAGCTGAAAAAAGAAATGATGACTTCGCATAACCGGAA 516
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 364 CACAATGGAGGACATACTGGTTAAGCTGAAAAAAGAAATGATGACTTCACATAACCGGAA 423
Query 517 GTTAGCTCAACCCCCGGAAGGTAACGAGGAAGCTAGGGCAGATCCAAAAGGACCAGCTAA 576
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 424 GTTAGCTCAACCCCCTGAAGGTAACGAGGAAGCTAGGGTAGATCCAAAGGGACCAGCTAA 483
Query 577 ATGTTGTGTGATGTGAAGAGAG-G-TTGGTGGGAAT 610
|||||||||||||||||||||| | |||||||||||
Sbjct 484 ATGTTGTGTGATGTGAAGAGAGCGGTTGGTGGGAAT 519
> Ahg476195 jgi|Araly1|476195|fgenesh2_kg.2__1325__AT1G70660.1
Length=783
Score = 542 bits (293), Expect = 2e-153
Identities = 425/489 (87%), Gaps = 8/489 (2%)
Strand=Plus/Plus
Query 116 ATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTTTAGATTGTTGGAAGAGCTT 175
||| ||||||| |||| |||||||||||||| || ||||||||||| || |||||||||
Sbjct 103 ATGGGTTCGGAAGAAGAGAAGGTCGTTGTTCCCAGAAACTTTAGATTATTAGAAGAGCTT 162
Query 176 GAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGAT 235
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 163 GAAAGAGGTGAGAAAGGAATTGGAGATGGCACTGTGAGCTATGGAATGGATGATGCTGAT 222
Query 236 GATATTTAT-ATGCAATCTTGGACTGGCACCATTCTTGGTCCTC-CTAATACTGCATATG 293
||||||| | ||||||||||||||||| |||||| ||||||||| | | |||||| ||||
Sbjct 223 GATATTT-TGATGCAATCTTGGACTGGTACCATTATTGGTCCTCAC-ACTACTGCGTATG 280
Query 294 AAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGTAAGGAGTACCCTGAAAGTCCACCGA 353
|||||||||||||||||||||||||||||||||| ||||| || || ||||||||||| |
Sbjct 281 AAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGAAAGGATTATCCGGAAAGTCCACCTA 340
Query 354 CTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCCAGAAACTGGAGTGGTTG 413
|||||||||||||||| |||||||||||||||||||| || || |||| |||||||||||
Sbjct 341 CTGTGAGGTTCCAGACTCGGATAAACATGGCTTGTGTCAATCCTGAAAATGGAGTGGTTG 400
Query 414 AACCGAGTCTCTTCCCTATGCTCACTAACTGGCGGCGAGAATATACAATGGAGGACATAC 473
| ||||||| ||||||||||||| | |||||| | ||||||| || |||||||| |||
Sbjct 401 ATCCGAGTCACTTCCCTATGCTCTCCAACTGGAGAAGAGAATACACCATGGAGGATTTAC 460
Query 474 TGGTTAAGCTGAAAAAAGAAATGATGACTTCGCATAACCGGAAGTTAGCTCAACCCCCGG 533
|| || |||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||
Sbjct 461 TGATTCAGCTTAAAAAAGAAATGATGTCATCGCAGAACCGCAAGTTAGCTCAACCCTTGG 520
Query 534 AAGGTAACGAGGAAGCTAGGGCAGATCCAAAAGGACCAGC--T-AAATGTTGTGTGATGT 590
||||||| ||||||| || |||| ||||| |||| || | ||||||||||| ||||
Sbjct 521 AAGGTAATGAGGAAGGAAGAACAGACCCAAAGGGACTAGTGGTGAAATGTTGTGTCATGT 580
Query 591 GAAGAGAGG 599
|| || |||
Sbjct 581 GAGGA-AGG 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5