BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23270.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313201 jgi|Araly1|313201|fgenesh1_pm.C_scaffold_1001981 603 5e-172
Ahg920871 jgi|Araly1|920871|scaffold_102152.1 387 6e-107
> Ahg313201 jgi|Araly1|313201|fgenesh1_pm.C_scaffold_1001981
Length=555
Score = 603 bits (326), Expect = 5e-172
Identities = 487/559 (87%), Gaps = 34/559 (6%)
Strand=Plus/Plus
Query 1 ATGTCAAGttttt-ttACTGGTAAAGATGATTCAGCTGTGGAGGAA-CTTCTTTCACAAG 58
||| ||| ||||| |||||||||||| |||| |||||||| ||| || ||||||||||
Sbjct 1 ATGCCAA-TTTTTAATACTGGTAAAGACGATTTAGCTGTGG-CGAATCTGCTTTCACAAG 58
Query 59 CTAAAGATCAATACGTTCTTGAACAAGTCGCCAAAATCAACTGTTCAGGCTTCACCGACG 118
|||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 59 CTAAAGATCACTACGTTCTTGAACAAGTCGCCAAAATCAACTGCTCTGGCTTCACCGACG 118
Query 119 ACACTGCTCTTCCCACTAATCCCGAAACCCGTTTACGTCGTCTCAAATCTCTTCCGGTTT 178
|| ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 119 ACTCTGCTCTTCCCTCTAATCACGAAACCCGTTTCCGTCGTCTCAAATCTCTTCCGGTTT 178
Query 179 CTCGAACC-GACTCGGTTTCGTCTTCCCCGAAGAAAC-T-TCTCTC--T----------- 222
|||| ||| ||||| |||||||||||| ||||||||| | |||||| |
Sbjct 179 CTCG-ACCTGACTCTGTTTCGTCTTCCTCGAAGAAACTTCTCTCTCAGTCCAAGAGCAAG 237
Query 223 -C-A--C--TCCAATAGCATGGCAAGTCACCCTGAGAAGAAGTATCGTGGAAACGTTTCC 276
| | | ||||| |||||||||||| |||||||||||||| | | |||||||||||||
Sbjct 238 GCAAGCCAGTCCAAGAGCATGGCAAGTTACCCTGAGAAGAAGAACCATGGAAACGTTTCC 297
Query 277 TCAGTTTCTTCTTTTTCCATCCAAGTTGGAAAGTCTTGTCCTTTAGATTCATCTGTTGAG 336
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCTGTTTCTTCTTTTTCGAACCAAGTTGGAAAGTCTTGTCCTTTAGATTCATCTGTTGAG 357
Query 337 GAAACACAGATTTTCTCGAAAACCAAACGTAATCAGAGTGTGAAG-TCACGAGGTGGGCT 395
||||||||||||||||||| |||||||| ||||||||| ||| || ||||||| ||||||
Sbjct 358 GAAACACAGATTTTCTCGAGAACCAAACTTAATCAGAGAGTG-AGTTCACGAGATGGGCT 416
Query 396 TGGAGAATCTTCAGGTTCTAAGAGAATTGGTTCGAGTTCATCGAGATTTTCTTGTGGAAA 455
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGTAGAATCTTCAGGTTCTAGGAGAATTGGTTCGAGTTCATCGAGATTTTCTTGTGGAAA 476
Query 456 CGTGTCCTCTAC-----CGGTTCGAGTTCCTCGAGGTTTTCTCGAGAAGGTAACATCTCG 510
||||||||||| |||||||||||| || || | ||||||||||||||| || |||
Sbjct 477 CGTGTCCTCTAGAGAATCGGTTCGAGTTCATCAAGATATTCTCGAGAAGGTAAGATTTCG 536
Query 511 ACTGCAACAAAAACCCTGA 529
||| ||||| |||||||||
Sbjct 537 ACTACAACACAAACCCTGA 555
> Ahg920871 jgi|Araly1|920871|scaffold_102152.1
Length=869
Score = 387 bits (209), Expect = 6e-107
Identities = 269/297 (91%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 1 ATGTCAAGtttttt-tACTGGTAAAGATGATTCAGCTGTGGAGGAA-CTTCTTTCACAAG 58
||| ||| |||||| |||||||||||| |||| |||||||| ||| || ||||||||||
Sbjct 30 ATGCCAA-TTTTTTATACTGGTAAAGACGATTTAGCTGTGG-CGAATCTGCTTTCACAAG 87
Query 59 CTAAAGATCAATACGTTCTTGAACAAGTCGCCAAAATCAACTGTTCAGGCTTCACCGACG 118
|||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct 88 CTAAAGATCACTACGTTCTTGAACAAGTCGCCAAACTCAACTGCTCTGGCTTCACCGACG 147
Query 119 ACACTGCTCTTCCCACTAATCCCGAAACCCGTTTACGTCGTCTCAAATCTCTTCCGGTTT 178
|| ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 148 ACTCTGCTCTTCCCTCTAATCACGAAACCCGTTTCCGTCGTCTCAAATCTCTTCCGGTTT 207
Query 179 CTCGAACC-GACTCGGTTTCGTCTTCCCCGAAGAAACTTCTCTCTCACTCCAATAGCATG 237
||||| || ||||| |||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 208 CTCGA-CCTGACTCTGTTTCGTCTTCCTCGAAGAAACTTCTCTCTCAGTCCAAGAGCATG 266
Query 238 GCAAGTCACCCTGAGAAGAAGTA-TCGTGGAAACGTTTCCTCAGTTTCTTCTTTTTC 293
|||||| ||||| |||||||| | |||||||||||||||||| ||||||||||||||
Sbjct 267 GCAAGTTACCCTAAGAAGAAG-AGTCGTGGAAACGTTTCCTCTGTTTCTTCTTTTTC 322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5