BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23280.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472150 jgi|Araly1|472150|fgenesh2_kg.1__2104__AT1G23280.1 1511 0.0
Ahg921381 jgi|Araly1|921381|scaffold_102662.1 1384 0.0
> Ahg472150 jgi|Araly1|472150|fgenesh2_kg.1__2104__AT1G23280.1
Length=1028
Score = 1511 bits (818), Expect = 0.0
Identities = 970/1041 (93%), Gaps = 20/1041 (2%)
Strand=Plus/Plus
Query 1 CGACGACAGTTGATCGGCGCCGTCCTTGACAGCTTCTCCTTCTTCTTTTTCTTCACTCAT 60
|||||||||||| ||| |||||||||| ||||| | | ||||||| |||||| |||||
Sbjct 1 CGACGACAGTTGCTCGCCGCCGTCCTTCACAGC-T-T-CTTCTTC---TTCTTCTCTCAT 54
Query 61 AAACCCTAAAGTCTCGCC-CGAAAGCTAAACCCTTTAGCTA-TTTTCAAGCTTCACCGGG 118
|||||||||| | || || |||||||||||| ||||| | | |||||||||||||| |
Sbjct 55 AAACCCTAAAATATC-CCTCGAAAGCTAAACTCTTTA-CCAGATTTCAAGCTTCACCTTG 112
Query 119 AAAGATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACAT 178
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 113 AAAGATGCAACACGATGAGGTTATATGGCAGGTCATCAGGCACAAGCACTGCAGTTACAT 172
Query 179 GGCCAAAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATGTAACAGGAATCTGTAA 238
|||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 173 GGCCAAAATCGAGACTGGAATCTTCTGCAGAAACCAATATAACGTAACCGGAATCTGTAA 232
Query 239 TCGAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATCCGTGACCATGATGGAGT 298
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 233 TCGAAGCTCTTGCCCTCTTGCCAATAGCCGATACGCCACTATCCGAGACCATGATGGAGT 292
Query 299 GTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCAAATAAATTGTGGGAGAG 358
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 293 GTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCAAAGAACTTGTGGGAGAG 352
Query 359 AGTTAAGCTGCCTGTAAACTATGAGAAGGCTCTTGAAATGATTGACAAACACTTGTTGTA 418
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 353 AGTTAAGCTGCCTGTTAACTATGAGATGGCTCTTGAAATGATTGACAAACACTTGTTGTA 412
Query 419 CTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACTAAAATGACTCAGATGCG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 CTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACTAAAATGACTCAGATGCG 472
Query 479 TATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTAGTCACTACGCCTAGGAG 538
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 473 TATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTAGTCCCTAGGCCTAGGAG 532
Query 539 GCAAATAAAGAGGGAGTCGAGAAGAGAGGAAAAGGCTATAAA-AGCAGCTCAGTTGGATA 597
||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 533 GCAAATAAAGAGGGAGTTAAGAAGAGAGGATAAGGCTA-AAATAGCAGCTCAGTTGGATA 591
Query 598 AGGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACTGAAATAT 657
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 592 AGGCTATTGAAAACGAGTTGATGGAACGTTTGAAGACAGGCATTTACCCTACTGACATAT 651
Query 658 ACAATTTATCTGACAGTGTG--TTTAACAAACTGCTTGATAGAGAAATCGAAAC-CAACG 714
||||||| || |||| ||| ||| ||||||| || ||| |||||||||| | ||||
Sbjct 652 ACAATTTCTC--ACAGCGTGCGTTTGACAAACTTATTAATAAAGAAATCGAA-CTCAACC 708
Query 715 ACGAAGTTGAGAAAGAAGAGGAGGAGGAAGGAGTGATTGAATATGTTGAAGGCGATGATG 774
| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 709 AAGAAGTTGAGGAAGAAGAGGAGGAGGAAGGAGTGGTTGAATATGTTGAAGGCGATGATG 768
Query 775 AACTCGAAGCAGAGGAAGAAGAAGACATGGAAGACTTCTCTGGTCTTCCATCTAAGGAGT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AACTCGAAGCAGAGGAAGAAGAAGACATGGAAGACTTCTCTGGTCTTCCATCTAAGGAGT 828
Query 835 CTTACCTTGAAGGTGATGATCATGACTCAGATGACGAGGATGA-CGATGATGCTGAAGAA 893
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 829 CTTATCTTGAAGGTGATGATCATGACTCAGATGACGAGGA-GAACGATGATGCTGAAGAA 887
Query 894 CAAGTTGTGATTCATAAAAAGGGAAGAGCTTTAAAGAAGTCTGATGATAATGGAAAAGCA 953
|||||||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct 888 CAAGTTGTGATTCATAAAAAAGGAAGGGTTTTAAAGAAGTCTGATGATAACGGAAAAGCA 947
Query 954 AAGAAGAAACCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGATGCAGACACAAGAAGATCC 1013
||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 948 AAGAAGAAATCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGATGGAGACACAAGGAGATCC 1007
Query 1014 CTGAAAAGCCTTAAAATTTGA 1034
||||||||||||||| |||||
Sbjct 1008 CTGAAAAGCCTTAAACTTTGA 1028
> Ahg921381 jgi|Araly1|921381|scaffold_102662.1
Length=952
Score = 1384 bits (749), Expect = 0.0
Identities = 879/940 (94%), Gaps = 16/940 (2%)
Strand=Plus/Plus
Query 103 TTCAAGCTTCACCGGGAAAGATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACA 162
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1 TTCAAGCTTCACCGTGAAAGATGCAACACGATAAGGTTATATGGCAGGTCATCGGGCACA 60
Query 163 AGCACTGTAGTTACATGGCCAAAATCGAAACTGGAATCTTTTGCAGAAACCAATATAATG 222
| ||||| ||||||||||||||| |||||||||||||||| |||||||| |||||||| |
Sbjct 61 ATCACTGCAGTTACATGGCCAAATTCGAAACTGGAATCTTCTGCAGAAATCAATATAACG 120
Query 223 TAACAGGAATCTGTAATCG-AAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATC 281
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TAACCGGAATCTGTAAT-GAAAGCTCTTGCCCTCTTGCTAATAGCCGATACGCCACTATC 179
Query 282 CGTGACCATGATGGAGTGTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCA 341
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGAGACCATGATGGAGTGTTTTATTTATATATGAAGACTATTGAGAGAGCTCACATGCCA 239
Query 342 AATAAATTGTGGGAGAGAGTTAAGCTGCCTGTAAACTATGAGAAGGCTCTTGAAATGATT 401
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 AAGAACTTGTGGGAGAGAGTTAAGCTGCCTGTAAACTATGAGATGGCTCTTGAAATGATT 299
Query 402 GACAAACACTTGTTGTACTGGCCCAAGTTGTTGCAGCATAAGGTTAAACAAAGACTGACT 461
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 GACAAACACTTGTTGTACTGGCCCAAGTTGTTGCAGCATAAGGTTAAACGAAGACTGACT 359
Query 462 AAAATGACTCAGATGCGTATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAGTA 521
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AAAATGACTCATATGCGTATTCGTATGAGGAAACTTGCTCTGAAAACAAGGGAGGTAATA 419
Query 522 GTCACTACGCCTAGGAGGCAAATAAAGAGGGAGTCGAGAAGAGAGGAAAAGGCTATAAA- 580
|| ||| |||||| ||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 420 ATCCCTAGGCCTAGAAGGCAAATAAAGAGGGAGTTGAGAAGAGAGGATAAGGCTA-AAAT 478
Query 581 AGCAGCTCAGTTGGATAAGGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCAT 640
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 479 AGCAGCTCAGTTGGATAAGGCTATTGAAAACGAGTTGATGGAACGTTTGAAGACAGGCAT 538
Query 641 TTACCCTACTGAAATATACAATTTATCTGA-CAGTGTGTTTAACAAACTGCTTGATAGAG 699
|||||||||||| ||||||||| | || || | ||| |||||||||| | ||| ||| ||
Sbjct 539 TTACCCTACTGACATATACAATATCTCAGATC-GTGCGTTTAACAAAATTCTTAATAAAG 597
Query 700 AAATCGAAAC-CAACGACGAAGTTGAGAAAGAAGAGGAGGAGGAAGGAGTGATTGAATAT 758
|||||||| | |||| | ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 598 AAATCGAA-CTCAACCAAGAAGTTGAGGAAGAAGAGGAGGAGGAAGGAGTGGTTGAATAT 656
Query 759 GTTGAAGGCGATGATGAACTCGAAGCAGAGGAAGAAGAAGA---CATGGAAGACTTCTCT 815
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 GTTGAAGGCGATGATGAACTCGAAGCAGAGGAAGAAGAAGAAGACATGGAAGACTTCTCT 716
Query 816 GGTCTTCCATCTAAGGAGTCTTACCTTGAAGGTGATGATCATGACTCAGATGACGAGGAT 875
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 717 GGTCTTCCATCTAAGGAGTCTTACCTTGAAGGTGATGATCATGACTCGGATGACGAGGA- 775
Query 876 GA-CGATGATGCTGAAGAACAAGTTGTGATTCATAAAAAGGGAAGAGCTTTAAAGAAGTC 934
|| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 776 GAACGATGATGCTGAAGAACAAGTTGTGATTCATAAAA-G--AAGAGCTTTTAAGAAGTC 832
Query 935 TGATGATAATGGAAAAGCAAAGAAGAAACCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGA 994
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 833 TGATGATAACGGAAAAGCAAAGAAGAAATCAAGAGTAGTTGTTGAGGTTGAGCAAGAAGA 892
Query 995 TGCAGACACAAGAAGATCCCTGAAAAGCCTTAAAATTTGA 1034
|| ||||||||||||||||||||||||||||||| |||||
Sbjct 893 TGGAGACACAAGAAGATCCCTGAAAAGCCTTAAACTTTGA 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5