BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23290.1
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472587 jgi|Araly1|472587|fgenesh2_kg.1__2541__AT1G23290.1 896 0.0
Ahg476190 jgi|Araly1|476190|fgenesh2_kg.2__1320__AT1G70600.1 636 0.0
> Ahg472587 jgi|Araly1|472587|fgenesh2_kg.1__2541__AT1G23290.1
Length=551
Score = 896 bits (485), Expect = 0.0
Identities = 533/555 (96%), Gaps = 7/555 (1%)
Strand=Plus/Plus
Query 23 AATGGCGACGGCGTTGAAGAAGAACAGAAAGAAGAGAGGTCACGTCAGCGCCGGACATGG 82
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1 AATGGCGACGGCGTTGAAGAAGAACAGAAAGAAGAGAGGACACGTCAGCGCCGGTCATGG 60
Query 83 ACGTATCGGTAAGCACCGTAAGCATCCCGGAGGTCGTGGAAACGCAGGAGGTATGCATCA 142
||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ACGTATCGGAAAACATCGCAAGCATCCCGGAGGTCGTGGTAACGCAGGAGGTATGCATCA 120
Query 143 CCACAGGATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGGAAAGTTGGTATGAGGTA 202
|||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 CCACCGTATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGCAAAGTTGGTATGAGGTA 180
Query 203 TTTCCACAAGCTTCGTAACAAGTTCTTTTGCCCAATCGTGAACCTGGACAAGCTATGGTC 262
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 TTTCCACAAGCTTCGTAACAAGTTCTTTTGCCCAATCGTGAACCTCGACAAGCTCTGGTC 240
Query 263 ACTTGTTCCTGAAGACGTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTTGTTCCTGAAGACGTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGT 300
Query 323 GACGCAGCATGGTTTCTTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACGCAGCATGGTTTCTTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTT 360
Query 383 CGTTGTGAAGGCTAAGCTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGTTGTGAAGGCTAAGCTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGG 420
Query 443 TGCTGTTGTTCTCACTGCTTAGttttttttttCAATTCAGTCTCTTTTTAATT-T-ATTT 500
|||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||
Sbjct 421 TGCTGTTGTTCTCACTGCTTAGGTTTTT----CAATTCAGTCTCTTTTTAATTATTATTT 476
Query 501 -CATGTTATTGAACTCAGCTTTGTTGGATTTTGGAATCAGAGATCTTTTAATCTATGGTA 559
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 TCATGTTTTTGAACTCAGCTTTGTTGGATTTTGGAATCAGAGATCTTTTAATCTATGCTA 536
Query 560 TTGGATTATATAATT 574
|||||||||||||||
Sbjct 537 TTGGATTATATAATT 551
> Ahg476190 jgi|Araly1|476190|fgenesh2_kg.2__1320__AT1G70600.1
Length=555
Score = 636 bits (344), Expect = 0.0
Identities = 401/429 (93%), Gaps = 1/429 (0%)
Strand=Plus/Plus
Query 39 AAGAAGAACAGAAAGAAGAGAGGTCACGTCAGCGCCGGACATGGACGTATCGGTAAGCAC 98
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 43 AAGAAGAACAGGAAGAAGAGAGGTCACGTCAGCGCCGGACATGGTCGTATCGGAAAGCAC 102
Query 99 CGTAAGCATCCCGGAGGTCGTGGAAACGCAGGAGGTATGCATCACCACAGGATCCTCTTC 158
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 103 CGTAAGCATCCCGGAGGTCGTGGTAACGCCGGAGGTATGCATCACCACAGGATCCTCTTC 162
Query 159 GACAAGTACCATCCAGGTTACTTCGGGAAAGTTGGTATGAGGTATTTCCACAAGCTTCGT 218
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 163 GACAAGTACCATCCAGGTTACTTTGGTAAAGTTGGTATGAGGTATTTCCACAAGCTGAGG 222
Query 219 AACAAGTTCTTTTGCCCAATCGTGAACCTGGACAAGCTATGGTCACTTGTTCCTGAAGAC 278
||||||||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||
Sbjct 223 AACAAGTTCTTCTGCCCAATCGTTAACCTCGACAAGCTTTGGTCACTCGTCCCTGAAGAT 282
Query 279 GTGAAGGCGAAATCGAGCAAGGATAATGTTCCGTTGATCGATGTGACGCAGCATGGTTTC 338
|||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 283 GTGAAGGCGAAATCAACCAAGGATAATGTTCCTTTGATCGATGTGACGCAACATGGTTTC 342
Query 339 TTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAACCTTTCGTTGTGAAGGCTAAG 398
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 343 TTCAAGGTTTTGGGGAAAGGTCATTTGCCTGAGAACAAGCCGTTCGTTGTGAAGGCGAAG 402
Query 399 CTTATCTCTAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTTCTCACT 458
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 403 CTTATCTCGAAGACTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTGTGCTCACT 462
Query 459 GCTTA-Gtt 466
|| || |||
Sbjct 463 GCCTAAGTT 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22073168943
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5