BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23300.1
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912200 jgi|Araly1|912200|Al_scaffold_0001_2454 1229 0.0
> Ahg912200 jgi|Araly1|912200|Al_scaffold_0001_2454
Length=1353
Score = 1229 bits (665), Expect = 0.0
Identities = 922/1041 (89%), Gaps = 37/1041 (4%)
Strand=Plus/Plus
Query 522 GCTCTTTGCTTACGCTGT-TA--ACTTCGCCACCGCCAAGTTCTTGCAGGCACAAAGCAA 578
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 255 GCTCTTTGCTTACGCTGTCAACTACTTCGCCACCGCCAAGTTCTTGCAGGCACAAAGCAA 314
Query 579 AGTGATTGCGATGGCGGTTATAGCAGCGACTGTGCTGTTACAGCACACTCTATTGAGTTG 638
|||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 315 GGTGATTGCAATGGCGGTTATAGCAGTGACCGTGCTGTTACAGCACACTCTGTTGAGTTG 374
Query 639 GTTGCTGATGCTGAAACTTAGATGGGGAATGGCCGGAGGAGCCGTTGTATTGAATATGTC 698
||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||
Sbjct 375 GTTTCTGATGCTGAAACTCGGATGGGGAATGGCCGGAGGAGCTGTTGTATTGAATGTGTC 434
Query 699 GTGGTGGTTAATAGATGTTACTCAAATAGTTTATATTTGTGGTGGTTCTTCTGGCAGAGC 758
||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct 435 GTGGTGGTTAATAGATGTTGCTCAAATAGTATATATTTGTGGTGGTTCTTGTGGCAGAGC 494
Query 759 TTGGTCAGGGCTCTCTTGGATGGCGTTCAAG-A-A-TCTCAGAGGCTTTGCAAGATTGTC 815
||||||||||||||| |||| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 495 TTGGTCAGGGCTCTCATGGAAGGCTTTCAAGAATATTCTCAGAGGCTTTGCAAGATTGTC 554
Query 816 TCTTGCCTCTGCAGTCATGGTTTGCCTAGAGGTTTGGTATTTCATGGCGTTGATTCTGTT 875
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||
Sbjct 555 TCTTGCCTCTGCAGTCATGGTTTGCCCAGAGGTTTGGTATTTGAAGGCGTTGATTCTGTT 614
Query 876 TGCGGGTTACCTCAAGAACCCTCAAGTCTCTGTAGCTGCTCTTTCGATATGCATGAACAT 935
||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 615 TGCGGGTTACCTCAAGAACCCTCAAGTCTCTGTGGCTGCTCTTTCCATTTGCATGAACAA 674
Query 936 ATTGGGATGGCCGATCATGGTGGCCTTTGGCTTCAATGCGGCTGTGAGTGTAAGAGAGTC 995
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 675 ATTGGGATGGCCGATCATGGTGGCCTTTGGCTTCAATGCAGCTGTGAGTGTAAGAGTGTC 734
Query 996 GAATGAGCTAGGAGCTGAACACCCAAGAAGAGC-AAAGTTCTTATTGATAGTGGCTATGA 1054
|| ||||| |||||||||||||||||||| || ||| ||||| ||||||||||| ||||
Sbjct 735 AAACGAGCTTGGAGCTGAACACCCAAGAAGGGCGAAA-TTCTTGTTGATAGTGGCAATGA 793
Query 1055 TAACTTCTGTATCGATCGGAATTGTGATATCAGTGACTCTCATTGTGTTGCGAGACAAGT 1114
||||||||||||| || ||| | |||||||| |||||||||| ||| | ||||||||||
Sbjct 794 TAACTTCTGTATCAATTGGAGCTATGATATCAATGACTCTCATCGTGGTACGAGACAAGT 853
Query 1115 ATCCAGCAATGTTCTCAGATGATGAAGAAGTGAGAGTACTCGTGAAGCAGCTGACTCCGT 1174
|||||| ||| ||||| ||||||||||||||||||| || |||||||||||||| |||
Sbjct 854 ATCCAGAAATTTTCTCTGATGATGAAGAAGTGAGAGGACACGTGAAGCAGCTGATTCCAA 913
Query 1175 TGCTGGCTCTCACCATCGTCATCAACAACATTCAGCCTGTTCTTTCTGGTGTAGCTGTTG 1234
|||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 914 AGCTGGCTCTCACAATCGTCATCAACAACATTCAGCCTGTTCTTTCTGGTGTCGCAGTTG 973
Query 1235 GAGCTGGATGGCAAGGCATTGTTGCATATGTGAACATTGGGTGTTACTATCTATGTGGTA 1294
|||||||||||||||| || ||||| ||||||||| |||||||||||||| |||||||||
Sbjct 974 GAGCTGGATGGCAAGGGATCGTTGCTTATGTGAACGTTGGGTGTTACTATTTATGTGGTA 1033
Query 1295 TACCAA-TCGGTCTTGTGCTCGGCTACAAGATGGAACTTGGAGTGAAGG---GG-ATATG 1349
|| | | | ||||| ||||||||||||||||||||||||||||| |||| || |||||
Sbjct 1034 TAACTACT-GGTCTAGTGCTCGGCTACAAGATGGAACTTGGAGTAAAGGTAAGGGATATG 1092
Query 1350 GACAGGAATGCTAACGGGAACAGTAGTTCAAACATCTGTTCTACTTTTCATTATCTATAG 1409
||||||||||||||| ||| || | || ||||||||||| || ||||||||
Sbjct 1093 GACAGGAATGCTAACAGGA-CA-T-GT----------GTTCTACTTTTGATAATCTATAG 1139
Query 1410 AACCAACTGGAAGAAAGAGGCTTCATTAGCAGAAGCTAGAATaaaaaaaTGG-GGAGACC 1468
|||||||||||| | ||||||||||||||||||||||||||||| |||||| || | ||
Sbjct 1140 AACCAACTGGAACAGAGAGGCTTCATTAGCAGAAGCTAGAATAAGGAAATGGAGGGG-CC 1198
Query 1469 AATCAAACAAAAGAGAAGAGATCGATC---TC---TGTGAAGAAGATGAAAACAATTCAA 1522
|| || | | | |||||||||| || || |||||||||||||| | | ||||||
Sbjct 1199 AAACAGATATAGGAGAAGAGATTGAAGAGATCAAATGTGAAGAAGATGACA-CTATTCAA 1257
Query 1523 A-TGGTGAAAACAATCACAGG 1542
| ||||||| ||||||| |||
Sbjct 1258 AATGGTGAATACAATCAAAGG 1278
Score = 226 bits (122), Expect = 4e-58
Identities = 154/168 (92%), Gaps = 7/168 (4%)
Strand=Plus/Plus
Query 132 GTCAAAGAAGTTGTGGTGGCTCGCTGGTCCTGCGATATTCACATCTTTCTGCCAATACTC 191
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 97 GTCAAAGAAGCTGTGGTGGCTCGCGGGTCCTGCGATATTCACATCTTTCTGCCAATA--- 153
Query 192 TCTTGGCGCCGTCACGCAGATCCTCGCCGGACACGTCAACACGCTGGCTTTAGCTGCTGT 251
| | ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 154 -C-T--CGCCGTCACTCAGATCCTCGCCGGACACGTCAACACGCTGGCTCTAGCTGCCGT 209
Query 252 CTCCATACAGAACTCCGTCATCTCCGGCTTCTCTGTCGGCATTATGCT 299
|||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 210 CTCCATACAGAACTCCGTCATCCCCGGCTTCTCTGTCGGCCTTATGCT 257
Score = 158 bits (85), Expect = 1e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 1 ATGGAAACTCTCAACGTTGATCATGAAGATACTATTTCCTCAGAACAAGAACATCGAGCA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 1 ATGGAAACTCTCAACGTTGATCATGAAGATACTATCTCCTCAGAACAAGAACATCAAACA 60
Query 61 CATACCAAATCCGACACCGACATGCCTCCGATCTCCG 97
||||||| |||||||||||||||||||||||||||||
Sbjct 61 CATACCACATCCGACACCGACATGCCTCCGATCTCCG 97
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57973352890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5