BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23310.1
Length=2086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472589 jgi|Araly1|472589|fgenesh2_kg.1__2543__AT1G23310.1 3018 0.0
Ahg926386 jgi|Araly1|926386|scaffold_201947.1 1679 0.0
> Ahg472589 jgi|Araly1|472589|fgenesh2_kg.1__2543__AT1G23310.1
Length=1978
Score = 3018 bits (1634), Expect = 0.0
Identities = 1811/1896 (96%), Gaps = 13/1896 (1%)
Strand=Plus/Plus
Query 1 GCATAAAAACGAGACACGGATATAGAGATATCGTGAATTGACTTTTGTCTGACAAATCCT 60
|||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |
Sbjct 1 GCATAAAAACGAGACACGGATAGATAGATATCGTGAACTGACTTTTGTCTGACAAATCGT 60
Query 61 CTTCGTCAATTTCAGTGGCTCTGCTGCTTCCTTTGTTGTGAAGCCACATAGATTAGATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 61 CTTCGTCAATTTCAGTGGCTCTGCTGCTTCCTTTGTTGTGAAGCCACAT-GATTGGATTG 119
Query 121 AGGAATGATCCAAACTCATGTCATACACACATTTGTAATCTGCTACACAAAATAC-TTTT 179
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 120 AGGAATGATCCAAATTCATGTCATACACACAATTGTAATCTGCTACACAAAATACTTTTT 179
Query 180 AAAATCACACACACTAATATTTTAACTCTCCCCACTCTTTGCCTTGCCCTTGGCTCTAGA 239
||| ||||||||||||||||||||||||| |||||||||| |||| |||| ||||| |
Sbjct 180 AAAGTCACACACACTAATATTTTAACTCTACCCACTCTTT-TCTTG-CCTTTGCTCTTCA 237
Query 240 ACCGAACGTGACTCTCCAGATAGACTTTTGGAGTCACAACATTGAGTTTGAAGAGGAGGG 299
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 238 ACCAAACGTGACTCTCCAGATAGACTTTTGGGGTCACAACATTGTGTTTGAAGAGGAGGG 297
Query 300 AAGAAGTGAGCTAGGGATTGGTTCAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTA 359
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 298 TAGAAGTGAGCTAGCGATTGCTTAAGAGTGAACATAAATGGCTCTCAAGGCATTAGACTA 357
Query 360 CGATACTCTGAATGAAAACGTCAAGAAGTGTCAGTATGCCGTAAGAGGTGAACTTTATCT 419
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 358 CGATACTCTGAATGAAAACGTCAAGAAGTGTCAATATGCCGTCAGAGGTGAACTCTATCT 417
Query 420 CCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAGATTATTTTCACAAACGTTGGGAACCC 479
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 418 CCGAGCTTCTGAGCTTCAGAAAGAAGGCAAAAAGATTATCTTCACAAACGTTGGGAACCC 477
Query 480 TCATGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGGTGGTTGCGCTTTGCCAAGC 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCACGCTTTAGGACAGAAGCCATTGACATTTCCTCGCCAGGTGGTTGCGCTTTGCCAAGC 537
Query 540 TCCGTTTCTACTAGATGACCCAAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAG 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCGTTTCTACTAGATGACCCCAATGTTGGAATGCTATTTCCAGCTGATGCTATTGCAAG 597
Query 600 AGCTAAACATTATCTTTCCTTGACTTCAGGCGGTTTAGGTGCTTACAGTGATTCAAGAGG 659
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 AGCTAAGCATTATCTTTCCTTGACTTCAGGCGGTTTAGGTGCTTACAGTGACTCAAGAGG 657
Query 660 CCTTCCAGGAGTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 CCTTCCAGGAGTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGCTATCCAAG 717
Query 720 TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAA 777
Query 780 TTGTGTTATACGCGGTAATGGAGATGGGATTCTAGTTCCGGTTCCACAGTATCCACTTTA 839
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 778 CTGTGTTATACGCGGTGATGGAGACGGGATTCTAGTTCCGGTTCCACAGTATCCACTCTA 837
Query 840 CTCAGCTACCATATCACTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGATGAGTCTGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCAGCTACCATATCACTGTTAGGTGGTACTCTTGTTCCTTACTATCTTGATGAGTCTGA 897
Query 900 AAACTGGGGACTTGATGTTGCTAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGG 959
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAACTGGGGACTTGATGTTAATAACCTTCGACAATCCGTTGCTCAGGCTCGTTCTCAAGG 957
Query 960 GATAACAGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGCCAGTGTCTAAG 1019
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 958 GATAACTGTAAGGGCAATGGTGATCATTAACCCTGGGAACCCAACTGGTCAGTGTCTAAG 1017
Query 1020 CGAAGCTAACATAAGAGAGATATTGAAGTTCTGTTATAACGAGAAACTGGTTCTTCTGGG 1079
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1018 CGAAGCTAACATAAGAGAGATATTGAAGTTCTGTTATAACGAGAAATTGGTTCTTCTGGG 1077
Query 1080 AGACGAGGTTTATCAGCAGAACATATACCAGGATGAGCGTCCCTTTATCAGCTCCAAGAA 1139
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1078 AGACGAGGTTTATCAGCAGAACATATATCAGGATGAGCGTCCCTTTATCAGCTCCAAGAA 1137
Query 1140 GGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCTTTTCACAC 1199
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1138 GGTTTTGATGGAAATGGGTTCACCGTTCAGCAAGGGAGTTCAGCTTGTATCTTTTCACAC 1197
Query 1200 AGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGAGGTGGATACTTTGAGATGACCAA 1259
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGTCTCTAAAGGATATTGGGGCGAATGTGGACAGCGAGGTGGATACTTTGAGATGACCAA 1257
Query 1260 CCTCCCTCCAAGGGTTGTTGAGGAGATATACAAGGTTGCATCAATTGCCCTCAGCCCTAA 1319
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1258 CCTCCCTCCAAGGGTTGTTGAGGAGATATACAAGGTTTCATCAATTGCCCTCAGCCCCAA 1317
Query 1320 TGTCTCTGCGCAAATCTTTATGGGTTTGATGGTTAATCCTCCAAAGCCTGGAGACATTTC 1379
|||| |||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1318 TGTCCCTGCCCAGATCTTTATGGGTTTGATGGTTAGTCCTCCAAAGCCTGGAGACATTTC 1377
Query 1380 ATATGACCAGTTCGCCCGTGAAAGCAAGGGGATTCTTGAATCTTTGAGAAGAAGAGCAAG 1439
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1378 ATATGACCAGTTCACCCGTGAAAGCAAGGGGACTCTTGAATCTTTGAGAAGAAGAGCAAG 1437
Query 1440 GCTCATGACAGATGGATTCAACAGCTGCAAAAACGTCGTGTGCAATTTCACAGAAGGTGC 1499
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 AATCATGACTGATGGATTCAACAGCTGCAAAAACATCGTGTGCAATTTCACAGAAGGTGC 1497
Query 1500 AATGTATTCGTTTCCTCAAATACGGTTACCAACGGGAGCTCTCCAAGCTGCAAAACAAGC 1559
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 1498 AATGTATTCGTTTCCTCAAATACGGCTACCACCGGGAGCTATCCAAGCTGCAAAACAAGC 1557
Query 1560 TGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCAC 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CGGAAAAGTGCCAGACGTTTTCTACTGTCTCAAGCTCTTAGAAGCCACAGGAATCTCCAC 1617
Query 1620 AGTACCTGGCTCTGGATTTGGACAGAAAGAAGGTGTGTTCCATCTGAGGACAACAATCCT 1679
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 AGTACCTGGCTCTGGGTTTGGACAGAAAGAAGGTGTGTTCCATCTGAGGACAACGATCCT 1677
Query 1680 GCCAGCAGAAGATGAGATGCCGGAGATCATGGATAGCTTCAAGAAGTTCAACGACGAGTT 1739
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1678 GCCAGCAGAAGAAGAGATGCCGGAAATCATGGATAGTTTCAAGAAGTTCAACGACGAGTT 1737
Query 1740 CATGACTCAGTATGATAATAACTTTGGTTATTCGAAAATGTGATTACTTCTTC--TTCTG 1797
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 1738 CATGACTCAGTATGATAATAACGTTGGTTATTCGAGAATGTGATTACTTCTTCAGTTCTT 1797
Query 1798 --AA-CGACTATTGTGTTCTGCTACACTCTTTAAAGCTAAATCTCTGTAGTACACTCTTT 1854
|| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CTAAACAACTATTGTGCTCAGCTACACTCTTTAAAGCTAAATCTCTGTAGTACACTCTTT 1857
Query 1855 CTCTT-TGCCCTATTCTATAAAC-CATATCTCTCTC 1888
|| || || |||||||||||||| | | ||||||||
Sbjct 1858 CT-TTCTGTCCTATTCTATAAACTC-TCTCTCTCTC 1891
> Ahg926386 jgi|Araly1|926386|scaffold_201947.1
Length=1490
Score = 1679 bits (909), Expect = 0.0
Identities = 1279/1459 (88%), Gaps = 19/1459 (1%)
Strand=Plus/Plus
Query 335 AAATGGCTCTCAAGGCATTAGACTACGA-TACTCTGAATGAAAACGTCAAGAAGTGTCAG 393
||||| |||||||||||||||||||||| | | |||||||||||||||||||| ||||||
Sbjct 20 AAATGTCTCTCAAGGCATTAGACTACGAGT-CGCTGAATGAAAACGTCAAGAATTGTCAG 78
Query 394 TATGCCGTAAGAGGTGAACTTTATCTCCGAGCTTCTGAGCTGCAGAAAGAAGGCAAAAAG 453
||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 79 TATGCAGTCAGAGGTGAACTTTATCTCCGTGCTTCTGAGCTTCAGAAAGAAGGCAAAAAG 138
Query 454 ATTATTTTCACAAACGTTGGGAACCCTCATGCTTTAGGACAGAAGCCAT-TGACATTTCC 512
|||||||||||||| ||||| |||||||||||||||||||| ||||| | |||| |||||
Sbjct 139 ATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAAAAGCC-TCTGACTTTTCC 197
Query 513 TCGCCAGGTGGTTGCGCTT-TGCCAAGCTCCGTTTCTACTAGATGACCCAAATGTTGGAA 571
||| ||||||||||| || |||||||| || ||||| |||||||| |||||| |||| |
Sbjct 198 TCGTCAGGTGGTTGC-TTTATGCCAAGCACCATTTCTGCTAGATGATCCAAATATTGGTA 256
Query 572 TGCTATTTCCAGCTGATGCTATTGCAAGAGCTAAACATTATCTTTCCTTGACTTCAGGCG 631
|| |||| ||||| |||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 257 TGATATTCCCAGCAGATGCTATTGCAAGAGCTAAGCATTATCTTTCTTTGACTTCTGGTG 316
Query 632 GT-TTAGGTGCTTACAGTGATTCAAGAGGCCTTCCAGGAGTTAGGAAAGAGGTTGCTGAG 690
|| || |||||||||||||| |||||||||||||| |||||| ||||||| |||||||||
Sbjct 317 GTCTT-GGTGCTTACAGTGACTCAAGAGGCCTTCCGGGAGTTCGGAAAGAAGTTGCTGAG 375
Query 691 TTCATTCAACGGCGTGATGGGTATCCAAGTGACCCAGAACTCATCTTTCTCACTGATGGA 750
|||||| ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||
Sbjct 376 TTCATTGAACGGCGTGATGGATATCCAAGCGACCCAGAACTCATATTTCTAACTGATGGA 435
Query 751 GCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTTATACGCGGTAATGGA-GATGGGAT 809
||||||||||||||||||||||||||||||||||| ||||||||| | | | ||||| ||
Sbjct 436 GCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTCATACGCGGTCA-GAAAGATGGAAT 494
Query 810 TCTAGTTCCGGTTCCACAGTATCCACTTTACTCAGCTACCATATCACTGTTAGGTGGTAC 869
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 495 TCTGGTTCCAGTTCCGCAATATCCACTCTACTCGGCTACTATATCTCTGTTAGGTGGTAC 554
Query 870 TCTTGTTCCTTACTATCTTGATGAGTCTGAAAACTGGGGACTTGATGTTG-CTAACCTTC 928
||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 555 TCTTGTTCCTTACTATCTTGAAGAGTCTGAAAACTGGGGACTTGATGTTAAC-AACCTTC 613
Query 929 GACAATCCGTTGCTCAGGCTCGTTCTCAAGGGATAACAGTAAGGGCAATGGTGATCATTA 988
| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 614 GCCAATCTGTTGCTCAGGCTCGCTCTCAAGGAATAACAGTAAGGGCAATGGTGATCATTA 673
Query 989 ACCCTGGGAACCCAACTGGCCAGTGTCTAAGCGAAGCTAACATAAGAGAGATATTGAAG- 1047
|||| || |||||||||||||||||||| |||||||||||| ||||||||||||| | |
Sbjct 674 ACCCCGGAAACCCAACTGGCCAGTGTCTTAGCGAAGCTAACTTAAGAGAGATATT-ACGG 732
Query 1048 TTCTGTTATAACGAGAAACTGGTTCTTCTGGGAGACGAGGTTTATCAGCAGAACATATAC 1107
||||||| | | |||| | | |||||||| |||||||| || |||||||| |||||||||
Sbjct 733 TTCTGTTGTGATGAGAGATTAGTTCTTCTTGGAGACGAAGTGTATCAGCAAAACATATAC 792
Query 1108 CAGGATGAGCGTCCCTTTATCAGCTCCAAGAAGGTTTTGATGGAAATGGGTTCGCCGTTC 1167
|| ||||||||||| |||||||| |||||||||||||||||||| ||||| | ||| ||
Sbjct 793 CAAGATGAGCGTCCTTTTATCAGTTCCAAGAAGGTTTTGATGGATATGGGAGCACCGATC 852
Query 1168 AGCAAGGAAGTTCAGCTTGTATCTTTTCACACAGTCTCTAAAGGATATTGGGGTGAATGT 1227
|||||||||||||||||| ||||||| ||||| || || |||||||| ||||| || |||
Sbjct 853 AGCAAGGAAGTTCAGCTTATATCTTTCCACACCGTTTCCAAAGGATACTGGGGCGAGTGT 912
Query 1228 GGACAGCGAGGTGGATACTTTGAGATGACCAACCTCCCTCCAAGGGTTGTTGAGGAGATA 1287
|| || ||||| || |||||||||||||| || ||||||| ||| ||||||||||||
Sbjct 913 GGGCAACGAGGCGGTTACTTTGAGATGACAAATATCCCTCCCAGGACCGTTGAGGAGATA 972
Query 1288 TACAAGGTTGCATCAATTGCCCTCAG-CCCTAATGTCTCTGCGCAAATCTTTATGGGTTT 1346
||||||||||| || || || ||||| ||| || |||||||| || || |||||||||||
Sbjct 973 TACAAGGTTGCCTCTATAGCTCTCAGTCCC-AACGTCTCTGCACAGATATTTATGGGTTT 1031
Query 1347 GATGGTTAATCCTCCAAAGCCTGGAGACATTTCATATGACCAGTTCGCCCGTGAAAGCAA 1406
||||||| || |||||||||||||||||||| |||||||| |||| || ||||||||
Sbjct 1032 AATGGTTAGCCCACCAAAGCCTGGAGACATTTCTTATGACCAATTCGTTCGCGAAAGCAA 1091
Query 1407 GGGGATTCTTGAATCTTTGAGAAGAAGAGCAAGGCTCATGACAGATGGATTCAACAGCTG 1466
||| || || ||||| ||||||||||||||||| | ||||| |||||||||||||| ||
Sbjct 1092 GGGAATACTAGAATCACTGAGAAGAAGAGCAAGGATGATGACTGATGGATTCAACAGTTG 1151
Query 1467 CAAAAACGTCGTGTGCAATTTCACAGAAGGTGCAATGTATTCGTTTCCTCAAATACGGTT 1526
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1152 CAAAAACGTCGTCTGTAATTTCACAGAAGGTGCTATGTATTCGTTTCCTCAAATAAAGTT 1211
Query 1527 ACCAACGGGAGCTCTCCAAGCTGCAAAACAAGCTGGAAAAGTGCCAGACGTTTTCTACTG 1586
||| || ||| || |||| ||||||||||| |||||||| || || |||||||||||
Sbjct 1212 ACCGTCGAAAGCAATCGAAGCAGCAAAACAAGCCGGAAAAGTCCCTGATGTTTTCTACTG 1271
Query 1587 TCTCAAGCTCTTAGAAGCCACAGGAATCTCCACAGTACCTGGCTCTGGATTTGGACAGAA 1646
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 1272 CCTTAAGCTCTTAGAAGCCACAGGAATCTCCACAGTTCCAGGCTCTGGATTTGGACAAAA 1331
Query 1647 AGAAGGTGTGTTCCATCTGAGGACAACAATCCTGCCAGCAGAAGATGAGATGCCGGAGAT 1706
|||||| ||||| ||| | ||||||||||| |||||||||||||| || ||||| |||||
Sbjct 1332 AGAAGGGGTGTTTCATTTAAGGACAACAATTCTGCCAGCAGAAGAAGAAATGCCAGAGAT 1391
Query 1707 CATGGATAGCTTCAAGAAGTTCAACGACGAGTTCATGACTCAGTA---TGATAATAACTT 1763
||||| || ||||| |||||||| || ||||||||| ||||||| ||||||||||||
Sbjct 1392 TATGGACAGTTTCAAAAAGTTCAATGATGAGTTCATGTCTCAGTACGGTGATAATAACTT 1451
Query 1764 TGGTTATTCGAAAATGTGA 1782
|||||| || | |||||||
Sbjct 1452 TGGTTACTCCAGAATGTGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78465904700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5