BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23320.1
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335577 jgi|Araly1|335577|fgenesh1_pg.C_scaffold_1002142 1807 0.0
Ahg476182 jgi|Araly1|476182|fgenesh2_kg.2__1312__AT1G70560.1 540 1e-152
> Ahg335577 jgi|Araly1|335577|fgenesh1_pg.C_scaffold_1002142
Length=1164
Score = 1807 bits (978), Expect = 0.0
Identities = 1105/1167 (95%), Gaps = 6/1167 (1%)
Strand=Plus/Plus
Query 4 ATGGTTGGGTGTGAAAACTCGAAGAAATCAGACAGTGGTTCGAACGAA-GACAAGAGCTT 62
||| ||||||||||||| |||||||||||| |||||| ||||||| || || ||| ||||
Sbjct 1 ATGATTGGGTGTGAAAATTCGAAGAAATCATACAGTGATTCGAAC-AAGGAGAAGTGCTT 59
Query 63 GTCCGATGACATCATCAATCTTGATCAAGGAGATCCTACGGCGTTTCAAGAGTATTGGAT 122
||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 GTCGGATGACGTCATCAATCTTGATCAAGGAGATCCGACGGCGTTTCAAGAGTATTGGAT 119
Query 123 GAAGAAAAAGGACAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAG 182
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAAGAAGAAGGATAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAG 179
Query 183 CGACACGAA-GAACGTGTGTTGGTTCCTAGAGCCAGAGCTTGAGAAGGCGATCAAGGCGT 241
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGATAC-AACGAACGTGTGTTGGTTCCTAGAGCCAGAGCTTGAGAAGGCGATCAAGGCGT 238
Query 242 TGCATGGTGCAATCGGTAACGCAGCGACCGAGGAACGCTACATCGTGGTGGGGACTGGCT 301
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TGCATGGTGCAATCGGTAATGCAGCTACCGAGGAACGCTACATCGTGGTGGGGACTGGCT 298
Query 302 CTTCACAGCTTTGTCAGGCCGCTTTGTTTGCACTTTCATCGCTCTCTGAGGTCAAACCTG 361
| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct 299 CGTCACAGCTTTGTCAGGCCGCTTTGTTTGCTCTTTCGTCGCTCTCTAAGGTCAAACCTG 358
Query 362 TCAGCATCGTCGCAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGCATCGTATCTTC 421
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 TCAGCATCGTCGTAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGCATCGTATGTTC 418
Query 422 AATCGACGCTATACAAATGGGAAGGAGACGCAAGGACGTTCGACAA-AAAGGGACCGTAC 480
||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 419 AATCGTCGCTATACAAATGGGAAGGAGACGCAAGGACGTTTGACAACAAA-GGACCGTAT 477
Query 481 ATCGAGTTGGTGACGTCACCGAACAACCCTGATGGGATCATGAGAGAGCCGGTGGTGAAT 540
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 ATAGAGTTGGTGACGTCACCGAACAACCCTGATGGGACCATGAGAGAGCCGGTGGTGAAC 537
Query 541 CGTAGGGAGGGTGGGAAAGTGATCCACGACTTGGCGTATTACTGGCCACACTACACTCCC 600
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 538 CGTAGGGAGGATGGGAAAGTGATCCACGACTTCGCGTATTACTGGCCACACTACACTCCC 597
Query 601 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACCGGCCAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACTGGCCAC 657
Query 661 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAGAGGTGGCTAAGAAGATGGTG 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 658 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAGAGGTTGCTAAGAAGATGGTG 717
Query 721 CACTACTTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACCACA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 CACTACTTAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACTACA 777
Query 781 ATTCTAAACGAACTGACAAAAACATGTAGGACACAATCGGAGAGCTTCTTCGAGTATGGC 840
||||| ||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 778 ATTCTCAACGAACTGACCAAAACCTGTCGGACTCAATCGGAGAGCTTCTTCGAGTATGGC 837
Query 841 TACGAGAAGATGAAGTCACGGTGGGAGAGGCTACGTGAGGTAGTCGAATCCGGTGACGCA 900
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 838 TACGAGAAGATGAAGTCACGGTGGGAGAGGCTACGAGAGGTCGTTGAATCCGGTGACGCA 897
Query 901 TTCACTCTCCCTAATTACCCTCAAGACTTCTGCAACTTCTTTGGCAAAACCCTCTCCACT 960
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 898 TTCACTCTCCCTAATTACCCTCAAGCCTTCTGCAACTTCTTTGGCAAAACCATCTCCACT 957
Query 961 TCTCCTGCGTTTGCGTGGTTGGGGTATAAAGAGGAAAGAGATCTCGGAAGTCTCTTGAAG 1020
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 TCTCCTGCGTTTGCCTGGTTGGGGTATAAAGAGGAAAGAGATCTTGGAAGTCTCTTGAAG 1017
Query 1021 GAGAAGAAGGTTTTGACGAGAGGAGGAGACCGATGTGGTTGTAACAAGAGGTACGTCCGT 1080
|||||||||||||||||||||||||| ||||||||||||||| | | || ||||||||||
Sbjct 1018 GAGAAGAAGGTTTTGACGAGAGGAGGGGACCGATGTGGTTGTGATAGGAAGTACGTCCGT 1077
Query 1081 GTCAGCATGCTTAGCCGCGACGATGACTTTGACGTCTCTCTCCAAAGACTCGCTACCATC 1140
||||||||||||||||||||||| ||||||||||||| | |||| |||||||| ||||||
Sbjct 1078 GTCAGCATGCTTAGCCGCGACGACGACTTTGACGTCTTTATCCACAGACTCGCCACCATC 1137
Query 1141 AAGGATCTCAAATGCGTCGAGCCTTGA 1167
||||||||||||||| | ||||||||
Sbjct 1138 AAGGATCTCAAATGCAACCAGCCTTGA 1164
> Ahg476182 jgi|Araly1|476182|fgenesh2_kg.2__1312__AT1G70560.1
Length=1401
Score = 540 bits (292), Expect = 1e-152
Identities = 895/1175 (76%), Gaps = 85/1175 (7%)
Strand=Plus/Plus
Query 19 AACTCGAAGAAATCAGACAGTGGTTCGAACGAAG-ACAAGAGCTTGTCCGATGACATCAT 77
||| |||||||| | || | | ||||||| ||| ||| |||||||||| | || |
Sbjct 55 AACCCGAAGAAACCCGAAAACGTTTCGAAC-AAGAACATCCCCTTGTCCGATTTCGTCGT 113
Query 78 CAATCTT-GATCAAGGAGATCCTACGGCGTTTC-AAGAGTATTGGATGAAGAAAAAG-GA 134
|||| || ||||| || ||||| |||||| | | | || || |||| |||| | | ||
Sbjct 114 CAAT-TTGGATCATGGTGATCCAACGGCG-TACGAGGAATACTGGAGGAAG-ATGGGTGA 170
Query 135 CAGGTGTACGGTGGTGATACCAGCATGGGATCTGATGAGTTACTTCAGCGACACGAAGAA 194
||||||||||||| ||||| | || ||||| |||||||||||||||||| || |||
Sbjct 171 CAGGTGTACGGTGACGATACGTGGTTGTGATCTTATGAGTTACTTCAGCGACTTGACGAA 230
Query 195 CGTGTGTTGGTTCCTAGAGCCAGAGCTTG-AGAAGGCGATCAAGG-CGTTGCATGGTGCA 252
| ||||||||||||| ||||||||||||| || | |||||||||| | ||||| |||||
Sbjct 231 CTTGTGTTGGTTCCTTGAGCCAGAGCTTGAAG-ATGCGATCAAGGAC-TTGCACGGTGCG 288
Query 253 ATCGGTAACGCAGCGACCGAGGAACGCTACATCGTGGTGGGGACTGGCTCTTCACAGCTT 312
| || ||||| ||||| || || || ||||||||||| ||||| ||||| | ||||||
Sbjct 289 GTAGGAAACGCTGCGACGGAAGACCGATACATCGTGGTCGGGACCGGCTCGACGCAGCTT 348
Query 313 TGTCAGGCCGCTTTGTTTGCACTTTCATCGCTCTCTGAGG--TCAAACCTGTCAGCATCG 370
||||| || || | ||||| || || || | ||| || ||||||||||| |||
Sbjct 349 TGTCAAGCGGCCGTCCACGCACTATCTTCACTAGC-CAGGACTC-AACCTGTCAGCGTCG 406
Query 371 TCGCAGCGGTTCCTTATTACTCCACATACGTGGAGGAGGC-ATCGTATCTTCAATCGACG 429
|||| || | ||||| ||| |||||||| ||||||||| | | | ||| ||| ||| |
Sbjct 407 TCGCCGCCGCTCCTTTTTATTCCACATATGTGGAGGAGACGA-CATATGTTCGGTCG--G 463
Query 430 CTA--TACAAATGGGAAGGAGACGCAAGGACG-TTCGACAAAAAGGGACCGTACATCGAG 486
|| ||||| ||||||||||||||| || | |||||||||||||| ||||||||||||
Sbjct 464 GTATGTACAAGTGGGAAGGAGACGCATGG-GGTTTCGACAAAAAGGGTCCGTACATCGAG 522
Query 487 TTGGTGACGTCACCGAACAACCCTGATGGGATCATGAGAGAGCCGGTGGTGAATCGT--A 544
| ||||||||||| || |||||||| || | ||| |||||| |||||||||| ||| |
Sbjct 523 CTAGTGACGTCACCTAATAACCCTGACGGAACCATCAGAGAGACGGTGGTGAACCGTCCA 582
Query 545 G--G--GAGGGTGGGAAAGTGATCCACGACTTGGCGTATTACTGGCCACACTACACTCCC 600
| | || | | ||||||||||| ||||| || || |||||||| ||||||||||||
Sbjct 583 GACGACGACGAAGCCAAAGTGATCCATGACTTTGCCTACTACTGGCCCCACTACACTCCC 642
Query 601 ATCACTCGCCGTCAAGACCATGACCTTATGCTCTTCACCTTCTCCAAAATCACCGGCCAC 660
||||||||||||||||| |||||| | ||||||||||| |||||||| ||||| ||||||
Sbjct 643 ATCACTCGCCGTCAAGATCATGACATCATGCTCTTCACTTTCTCCAAGATCACAGGCCAC 702
Query 661 GCTGGGTCACGCATTGGGTGGGCGTTAGTGAAGGACATAG-AGGTGGCTAAGAAGATGGT 719
|||||||| || || |||||||| || |||||||||| || |||| ||||||||||||||
Sbjct 703 GCTGGGTCCCGTATCGGGTGGGCATTGGTGAAGGACA-AGGAGGTAGCTAAGAAGATGGT 761
Query 720 -GCACTACT-TAACAATAAACTCCATTGGTGTGTCGAAGGAGTCACAAACTCGAGCCACC 777
| | || | ||| | |||||||||||||| || |||||||||||| |||| || |
Sbjct 762 TG-AGTA-TATAATTGTGAACTCCATTGGTGTATCTAAGGAGTCACAAGTTCGAACCGCT 819
Query 778 ACA-ATTCT-AAACGAACTGACAAAA-ACATGTA---G-GA--C--ACAA-TCGGAGAGC 825
| | || || ||| | || | | | || |||| | || | || | || ||||
Sbjct 820 A-AGATACTCAAA-GTTCTTA-AGGAGACTTGTAATAGTGAGTCCGACGAGTCTGAGAAT 876
Query 826 TTCTTCGAGTATGGCTACG-AGAA-GATGAAGTCA-CGGTGGGAGAGGCTACGTGAGGTA 882
|||||| ||||||| | || | || ||||||| | || ||||||| ||||||||| ||
Sbjct 877 TTCTTCAAGTATGG-T-CGTAAAATGATGAAGA-ATCGATGGGAGAAGCTACGTGAAGTG 933
Query 883 GTCGAATCCG-GTGACGCATTCACTCT-CCCTAATTACCCTCAAG-ACTTCTGCAACTTC 939
|| ||| | | || || |||||||| ||| || |||||| ||| | || ||||||| |
Sbjct 934 GT-GAAAGAGAGCGATGCTTTCACTCTTCCC-AAGTACCCTGAAGCATTT-TGCAACTAC 990
Query 940 TTTGGCAAAACCCTCTCCA--CTT-CTCCTGCGTTTGCGTGGTTGGGGTATAAAGAGGAA 996
||||| |||| | ||| | ||| | ||||||||||||||| | ||| | ||| | ||
Sbjct 991 TTTGG-AAAATCA-CTCGAATCTTAC-CCTGCGTTTGCGTGGCTAGGG-ACGAAG-G-AA 1044
Query 997 -AGA-G-ATCTCGGA-AGTCTCTTGAAGGAGA-AGAAGGTT-T-TGACGAGAGGAGGAGA 1049
||| | |||| || ||| |||| ||||| | ||||| | || | |||| |||||
Sbjct 1045 GAGACGGATCT-GGTTAGTGAATTGA-GGAGACACAAGGTAATGTG-C-AGAGCTGGAGA 1100
Query 1050 CCGATGTGGTTGTAACAAGAGGTACGTCCGTGTCAGCATGCTTAGCCGCGACGATGACTT 1109
|| ||||| | | |||||| | | ||||| |||||||||||||| || || || | ||
Sbjct 1101 ACGTTGTGGATCTGACAAGAAGCATGTCCGAGTCAGCATGCTTAGTCGTGAAGACGT-TT 1159
Query 1110 TGAC-GTCTCTCTCCAAAGACTCGCTACCATCAAG 1143
| | |||| |||| | |||||||| | ||| |||
Sbjct 1160 TCAATGTCTTTCTCGAGAGACTCGCCAACATGAAG 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5