BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23340.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472593 jgi|Araly1|472593|fgenesh2_kg.1__2547__AT1G23340.1 2562 0.0
Ahg908648 jgi|Araly1|908648|Al_scaffold_0002_1729 955 0.0
> Ahg472593 jgi|Araly1|472593|fgenesh2_kg.1__2547__AT1G23340.1
Length=1628
Score = 2562 bits (1387), Expect = 0.0
Identities = 1552/1632 (95%), Gaps = 10/1632 (1%)
Strand=Plus/Plus
Query 1 CAGAATTCTATTAATATACGCTACTATACACTAATTTCATTTATTTATGAGGGGTGAGTT 60
||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 CAGAATTCTATCAATTTACGCTACTATACACTAA-TTCATTTATTTTTGAGGGGTGAGTT 59
Query 61 GATTCATTAATTCTTGGATCTTTGGGTGTCTAGGTTTACTTAGAGAAGTGACTTGTGTCT 120
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 60 GATTCATTGATTCTTGGTTCTTTGGGGGTCTAGGTTTACTTAGAGAAGTGACTTATGTCT 119
Query 121 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 179
Query 181 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 239
Query 241 TCATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTC--C-TGACTCCTCAGT 297
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 240 ACATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTCATCCTCACTCCTCAGC 299
Query 298 CATTGCAATGtcttcttcttcttcttgcttgttcttcactttcattctcttactcagtct 357
|||| |||||||||||||||||| || | | |||||| |||||||||||||||| ||||
Sbjct 300 CATTACAATGTCTTCTTCTTCTTGTT--T-GATCTTCATTTTCATTCTCTTACTCTGTCT 356
Query 358 cttctcctcctatgcttctcCATCGAATTCGACATCCGAAACTGTGCCTCTCCGGCCTCA 417
||||||||||| |||||||||| | ||||||||||| ||||||| | |||||||||||||
Sbjct 357 CTTCTCCTCCTCTGCTTCTCCACCAAATTCGACATCTGAAACTGAGACTCTCCGGCCTCA 416
Query 418 AAGAGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAGATTAATAAACCAGC 477
|| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 AAAAGAGATTCAAAAGCTGAAACTCATCAGAAAACAACTCCAAAAGATCAATAAACCAGC 476
Query 478 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATCACCA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATAACCA 536
Query 538 GCCTGCTTTTGATCATCCTTTGTTACAGGGACAACGACCAATGGATCCACCGGAGATGCC 597
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 537 GCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGGATCCACCGGAGATGCC 596
Query 598 TATAGGGTATAGCCAAGAAAATGAATCCCACGAAAATTTCCAGCTTTGGAGTTTATACGG 657
|||||||||||||||||||| |||||| | |||||||| ||||||||||| || | |||
Sbjct 597 CATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGCTTTGGAGCTTGTCCGG 656
Query 658 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACAACGGAGCAAGACATGTTAAG 717
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 657 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTGAACAAGACATGTTAAG 716
Query 718 AGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 777
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 776
Query 778 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGC 837
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATATTACGGAGCAAAAGC 836
Query 838 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 896
Query 898 TTGGATCATCGCCGGTTCTTTCGCCGGCGATCTTAATACCATCGAAGCTGGTTGGCAGAT 957
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 TTGGGTCATCGCCGGTTCTTTCGCCGACGATCTTAATACCATCGAAGCTGGTTGGCAGAT 956
Query 958 TAGCCCGGAGCTATACGGAGACACTAACCCAAGATTCTTCACCTATTGGACGTCGGATGC 1017
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 957 TAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTCACCTATTGGACGTCGGATGC 1016
Query 1018 TTACCAAGCAACAGGATGCTATAACCTACTATGTTCTGGTTTTGTTCAAACAAACAATCG 1077
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1017 CTACCAAGCAACAGGATGCTATAACTTACTATGTTCTGGGTTTGTTCAAACAAACAATCG 1076
Query 1078 AATCGCAATTGGAGCGGCGATTTCGCCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1137
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1077 AATCGCAATCGGAGCGGCAATTTCACCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1136
Query 1138 AAGCTTATTGATATGGAAGGACCCAAAGCATGGACATTGGTGGCTCCAATTCGGGTCGGG 1197
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1137 AAGTTTATTGATATGGAAGGATCCAAAGCATGGACACTGGTGGCTCCAATTCGGGTCGGG 1196
Query 1198 TACACTAGTCGGATATTGGCCCGTATCTCTGTTCACACACCTGAGGGAGCATGGAAACAT 1257
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1197 TACACTAGTCGGATATTGGCCCGTATCTTTGTTCACACACCTGAGAGAGCATGGAAACAT 1256
Query 1258 GGTCCAGTTTGGTGGCGAGATCGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1317
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGTCCAGTTCGGTGGCGAGATAGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1316
Query 1318 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1376
Query 1378 TCAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTTGCAGA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1377 ACAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTCGCGGA 1436
Query 1438 TCATCCTAATTGTTATGATATAAGAGGAGGGGTAAACCGTGTTTGGGGTAACtttttttA 1497
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1437 TCATCCGAATTGTTATGACATAAGAGGAGGAGTAAACCGTGTTTGGGGTAACTATTTTTA 1496
Query 1498 TTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGaaaa--aaaaGAA-GTGGATA 1554
|||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 1497 CTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGAAAAGCAAAAAAAAGTGGATA 1556
Query 1555 GTGTTGTTTTGAGCTTAAGTAAATGAGATTTTTTGGGATTTAGAGCTCAGGACAATGATG 1614
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1557 GTGTTGTTCTGAGCTTACGTAAATGAGATTTTTTGGGATTTAGGGCTCAGGACAATGATG 1616
Query 1615 AAAGATCCATAG 1626
||||||||||||
Sbjct 1617 AAAGATCCATAG 1628
> Ahg908648 jgi|Araly1|908648|Al_scaffold_0002_1729
Length=1401
Score = 955 bits (517), Expect = 0.0
Identities = 942/1146 (82%), Gaps = 33/1146 (3%)
Strand=Plus/Plus
Query 405 CTCTCCGGCCTCAAAG-AGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAG 463
|||||||||| | ||| |||| | |||||| | ||||| || ||| || | ||| | |||
Sbjct 269 CTCTCCGGCCAC-AAGAAGAGCTCCAGAAGCTAAAACTGATTAGACAAGAGCTCGACAAG 327
Query 464 ATTAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTG-T 522
|| || || || || || || ||||| ||| ||||||||||| |||||||||| |
Sbjct 328 ATCAACAAGCCGGCTGGGAAAACTATTCAGAGCCCAGATGGAGATGTAATAGATTGTGTT 387
Query 523 TCCATCTCATCACCAGCCTGCTTTTGATCATCCTTTGTTACAGGGACA-ACGACCAATGG 581
|| | ||||||| || || ||||| ||||||||| | ||||| ||||| | ||||||||
Sbjct 388 TCGA-CTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAGA-GACCAATGA 445
Query 582 ATCCACCGGAGATGCCTATAGGGTATAGCCAAGAAAATGAATCCCACG-A-AA-ATTTCC 638
|||| || ||||| || | ||| |||| |||| |||| || | | | || ||| ||
Sbjct 446 ATCCGCCTGAGATCCCCAAAGGTTATAAAAAAGATGATGAGTCGTATGAAGAAGATTCCC 505
Query 639 AGCTTTGGAGTTTATACGGTGAGTCTTGCCCGGAAGGTACGATTCCGATCA-GAAGAACA 697
|||| |||||||||| |||||||||||| ||||||||||| |||||||| | ||||||||
Sbjct 506 AGCTGTGGAGTTTATCCGGTGAGTCTTGTCCGGAAGGTACTATTCCGAT-ACGAAGAACA 564
Query 698 ACGGAGCAAGACATGTTAAGAGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGC 757
||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 565 ACGGAACAAGACATGTTAAGAGCAAGTTCTGTCAGTAGATTTGGTCGGAAAATCAGGCGC 624
Query 758 GTGAGAAGGGATTCGAGC-AGTAATGGCCACGAGCATGCGGTTGGATACGT-ATCGGGAA 815
||||| || ||||| | | | ||| || ||||| |||||||| ||||| || | |||| |
Sbjct 625 GTGAGGAGAGATTCCA-CTAATAACGGACACGAACATGCGGTGGGATATGTAACCGGG-A 682
Query 816 GTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAAT 875
| |||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 683 GACAATACTACGGAGCAAAAGCAAGTATTAACGTGTGGTCGCCACGTGTTGCGAGCCAAT 742
Query 876 ACGAGTTTAGTCTATCTCAGATTTGGATCATCGCCGGTTCTTTCGC-CGGCGATCTTAAT 934
|||| |||||||| |||||||||||| | || |||||||| ||| | | ||||||||||
Sbjct 743 ACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCGGTTCGTTCACAC-ACGATCTTAAT 801
Query 935 ACCATCGAAGCTGGTTGGCAGATTAGCCCGGAGCTATACGGAGACACTAACCCAAGATTC 994
||||| ||||| |||||||| |||||||||||| | || || || ||| |||||||||||
Sbjct 802 ACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGTATGGGGATACTTACCCAAGATTC 861
Query 995 TTCACCTATTGGACGTCGGATGCTTA-CCAAGCAACAGGATGCTATAACCTACTATGTTC 1053
|| ||||| |||||||| ||||| || | || |||| || ||||| || | | |||||
Sbjct 862 TTTACCTACTGGACGTCCGATGCATATCGAA-CAACGGGTTGCTACAATTTGTTGTGTTC 920
Query 1054 TGGTTTTGTTCAAACAAACAATCGAATCGCAATTGGAGCGGCGATTTCGCC-CGTTTCGT 1112
||||| |||||||| ||| ||||||||| |||||||| |||||||| || | || |
Sbjct 921 CGGTTTCGTTCAAACCAACCGTCGAATCGCGATTGGAGCTGCGATTTCTCCTAG-ATCTT 979
Query 1113 CGTATAAAGGTGGACAATTCGATATAAGCTTATTGATATGGAAGGACCCAAAGCATGGAC 1172
||||||||||||||||||||||||||||||| || || |||||||| || ||||| || |
Sbjct 980 CGTATAAAGGTGGACAATTCGATATAAGCTTGTTAATTTGGAAGGATCCGAAGCACGGTC 1039
Query 1173 ATTGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCC--CGTATCTCTGTT 1230
| |||||||| ||||||||||| ||| || |||||||||||||||| ||| | ||| ||
Sbjct 1040 ACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGATATTGGCCTGCGT-T-TCTATT 1097
Query 1231 CACACACCTGAGGGAGCATGGAAACATGGTCCAGTTTGGTGGCGAGATCGTGAACACAC- 1289
||| || || | | | ||||| | ||||||||| || || |||||||| ||||||| ||
Sbjct 1098 CACGCATCTAAAGCAACATGGGAGCATGGTCCAATTCGGCGGCGAGATTGTGAACA-ACC 1156
Query 1290 GACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTT 1349
|||| ||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 1157 GACCCGGTGGTTCACACACTACGACCCAAATGGGAAGTGGCCATTTTGCCGGTGAAGGTT 1216
Query 1350 TTGGAAAAGCGTCTTACTTTA-GGAATCTTCAAATGGTAGATTGGGACAATACTCTTATT 1408
|||| ||||| ||||| ||| ||||||| ||||| || |||||||||||||||||||||
Sbjct 1217 TTGGTAAAGCATCTTA-TTTCCGGAATCTCCAAATCGTTGATTGGGACAATACTCTTATT 1275
Query 1409 CC-GATATCTAATCTTAAAG-TTCTTGCAGATCATCCTAATTGTTATGATATAAGAGGAG 1466
|| | | || ||||| |||| |||| ||||||||||| |||||||||||||||||||| |
Sbjct 1276 CCCGTT-TCGAATCT-AAAGATTCTCGCAGATCATCCCAATTGTTATGATATAAGAGGTG 1333
Query 1467 GGGTAAACCGTGTTTGGGGTAACtttttttATTACGGAGGACCGGGTAAAAACTCGAAAT 1526
|| || ||||| |||||||||| ||||||||| ||||| || || |||||| | | ||
Sbjct 1334 GGACGAATCGTGTGTGGGGTAACTATTTTTATTATGGAGGTCCAGGAAAAAACCCTAGAT 1393
Query 1527 GTCCAT 1532
||||||
Sbjct 1394 GTCCAT 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5