BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23340.1 Length=1796 Score E Sequences producing significant alignments: (Bits) Value Ahg472593 jgi|Araly1|472593|fgenesh2_kg.1__2547__AT1G23340.1 2562 0.0 Ahg908648 jgi|Araly1|908648|Al_scaffold_0002_1729 955 0.0 > Ahg472593 jgi|Araly1|472593|fgenesh2_kg.1__2547__AT1G23340.1 Length=1628 Score = 2562 bits (1387), Expect = 0.0 Identities = 1552/1632 (95%), Gaps = 10/1632 (1%) Strand=Plus/Plus Query 1 CAGAATTCTATTAATATACGCTACTATACACTAATTTCATTTATTTATGAGGGGTGAGTT 60 ||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1 CAGAATTCTATCAATTTACGCTACTATACACTAA-TTCATTTATTTTTGAGGGGTGAGTT 59 Query 61 GATTCATTAATTCTTGGATCTTTGGGTGTCTAGGTTTACTTAGAGAAGTGACTTGTGTCT 120 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 60 GATTCATTGATTCTTGGTTCTTTGGGGGTCTAGGTTTACTTAGAGAAGTGACTTATGTCT 119 Query 121 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 179 Query 181 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 239 Query 241 TCATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTC--C-TGACTCCTCAGT 297 ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 240 ACATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTCATCCTCACTCCTCAGC 299 Query 298 CATTGCAATGtcttcttcttcttcttgcttgttcttcactttcattctcttactcagtct 357 |||| |||||||||||||||||| || | | |||||| |||||||||||||||| |||| Sbjct 300 CATTACAATGTCTTCTTCTTCTTGTT--T-GATCTTCATTTTCATTCTCTTACTCTGTCT 356 Query 358 cttctcctcctatgcttctcCATCGAATTCGACATCCGAAACTGTGCCTCTCCGGCCTCA 417 ||||||||||| |||||||||| | ||||||||||| ||||||| | ||||||||||||| Sbjct 357 CTTCTCCTCCTCTGCTTCTCCACCAAATTCGACATCTGAAACTGAGACTCTCCGGCCTCA 416 Query 418 AAGAGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAGATTAATAAACCAGC 477 || ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 417 AAAAGAGATTCAAAAGCTGAAACTCATCAGAAAACAACTCCAAAAGATCAATAAACCAGC 476 Query 478 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATCACCA 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 477 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATAACCA 536 Query 538 GCCTGCTTTTGATCATCCTTTGTTACAGGGACAACGACCAATGGATCCACCGGAGATGCC 597 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 537 GCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGGATCCACCGGAGATGCC 596 Query 598 TATAGGGTATAGCCAAGAAAATGAATCCCACGAAAATTTCCAGCTTTGGAGTTTATACGG 657 |||||||||||||||||||| |||||| | |||||||| ||||||||||| || | ||| Sbjct 597 CATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGCTTTGGAGCTTGTCCGG 656 Query 658 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACAACGGAGCAAGACATGTTAAG 717 ||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct 657 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTGAACAAGACATGTTAAG 716 Query 718 AGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 777 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 776 Query 778 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGC 837 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 777 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATATTACGGAGCAAAAGC 836 Query 838 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 896 Query 898 TTGGATCATCGCCGGTTCTTTCGCCGGCGATCTTAATACCATCGAAGCTGGTTGGCAGAT 957 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 897 TTGGGTCATCGCCGGTTCTTTCGCCGACGATCTTAATACCATCGAAGCTGGTTGGCAGAT 956 Query 958 TAGCCCGGAGCTATACGGAGACACTAACCCAAGATTCTTCACCTATTGGACGTCGGATGC 1017 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 957 TAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTCACCTATTGGACGTCGGATGC 1016 Query 1018 TTACCAAGCAACAGGATGCTATAACCTACTATGTTCTGGTTTTGTTCAAACAAACAATCG 1077 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1017 CTACCAAGCAACAGGATGCTATAACTTACTATGTTCTGGGTTTGTTCAAACAAACAATCG 1076 Query 1078 AATCGCAATTGGAGCGGCGATTTCGCCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1137 ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1077 AATCGCAATCGGAGCGGCAATTTCACCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1136 Query 1138 AAGCTTATTGATATGGAAGGACCCAAAGCATGGACATTGGTGGCTCCAATTCGGGTCGGG 1197 ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1137 AAGTTTATTGATATGGAAGGATCCAAAGCATGGACACTGGTGGCTCCAATTCGGGTCGGG 1196 Query 1198 TACACTAGTCGGATATTGGCCCGTATCTCTGTTCACACACCTGAGGGAGCATGGAAACAT 1257 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1197 TACACTAGTCGGATATTGGCCCGTATCTTTGTTCACACACCTGAGAGAGCATGGAAACAT 1256 Query 1258 GGTCCAGTTTGGTGGCGAGATCGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1317 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1257 GGTCCAGTTCGGTGGCGAGATAGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1316 Query 1318 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1376 Query 1378 TCAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTTGCAGA 1437 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1377 ACAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTCGCGGA 1436 Query 1438 TCATCCTAATTGTTATGATATAAGAGGAGGGGTAAACCGTGTTTGGGGTAACtttttttA 1497 |||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct 1437 TCATCCGAATTGTTATGACATAAGAGGAGGAGTAAACCGTGTTTGGGGTAACTATTTTTA 1496 Query 1498 TTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGaaaa--aaaaGAA-GTGGATA 1554 |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct 1497 CTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGAAAAGCAAAAAAAAGTGGATA 1556 Query 1555 GTGTTGTTTTGAGCTTAAGTAAATGAGATTTTTTGGGATTTAGAGCTCAGGACAATGATG 1614 |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1557 GTGTTGTTCTGAGCTTACGTAAATGAGATTTTTTGGGATTTAGGGCTCAGGACAATGATG 1616 Query 1615 AAAGATCCATAG 1626 |||||||||||| Sbjct 1617 AAAGATCCATAG 1628 > Ahg908648 jgi|Araly1|908648|Al_scaffold_0002_1729 Length=1401 Score = 955 bits (517), Expect = 0.0 Identities = 942/1146 (82%), Gaps = 33/1146 (3%) Strand=Plus/Plus Query 405 CTCTCCGGCCTCAAAG-AGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAG 463 |||||||||| | ||| |||| | |||||| | ||||| || ||| || | ||| | ||| Sbjct 269 CTCTCCGGCCAC-AAGAAGAGCTCCAGAAGCTAAAACTGATTAGACAAGAGCTCGACAAG 327 Query 464 ATTAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTG-T 522 || || || || || || || ||||| ||| ||||||||||| |||||||||| | Sbjct 328 ATCAACAAGCCGGCTGGGAAAACTATTCAGAGCCCAGATGGAGATGTAATAGATTGTGTT 387 Query 523 TCCATCTCATCACCAGCCTGCTTTTGATCATCCTTTGTTACAGGGACA-ACGACCAATGG 581 || | ||||||| || || ||||| ||||||||| | ||||| ||||| | |||||||| Sbjct 388 TCGA-CTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAGA-GACCAATGA 445 Query 582 ATCCACCGGAGATGCCTATAGGGTATAGCCAAGAAAATGAATCCCACG-A-AA-ATTTCC 638 |||| || ||||| || | ||| |||| |||| |||| || | | | || ||| || Sbjct 446 ATCCGCCTGAGATCCCCAAAGGTTATAAAAAAGATGATGAGTCGTATGAAGAAGATTCCC 505 Query 639 AGCTTTGGAGTTTATACGGTGAGTCTTGCCCGGAAGGTACGATTCCGATCA-GAAGAACA 697 |||| |||||||||| |||||||||||| ||||||||||| |||||||| | |||||||| Sbjct 506 AGCTGTGGAGTTTATCCGGTGAGTCTTGTCCGGAAGGTACTATTCCGAT-ACGAAGAACA 564 Query 698 ACGGAGCAAGACATGTTAAGAGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGC 757 ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 565 ACGGAACAAGACATGTTAAGAGCAAGTTCTGTCAGTAGATTTGGTCGGAAAATCAGGCGC 624 Query 758 GTGAGAAGGGATTCGAGC-AGTAATGGCCACGAGCATGCGGTTGGATACGT-ATCGGGAA 815 ||||| || ||||| | | | ||| || ||||| |||||||| ||||| || | |||| | Sbjct 625 GTGAGGAGAGATTCCA-CTAATAACGGACACGAACATGCGGTGGGATATGTAACCGGG-A 682 Query 816 GTCAATACTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAAT 875 | |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 683 GACAATACTACGGAGCAAAAGCAAGTATTAACGTGTGGTCGCCACGTGTTGCGAGCCAAT 742 Query 876 ACGAGTTTAGTCTATCTCAGATTTGGATCATCGCCGGTTCTTTCGC-CGGCGATCTTAAT 934 |||| |||||||| |||||||||||| | || |||||||| ||| | | |||||||||| Sbjct 743 ACGAATTTAGTCTTTCTCAGATTTGGGTTATTGCCGGTTCGTTCACAC-ACGATCTTAAT 801 Query 935 ACCATCGAAGCTGGTTGGCAGATTAGCCCGGAGCTATACGGAGACACTAACCCAAGATTC 994 ||||| ||||| |||||||| |||||||||||| | || || || ||| ||||||||||| Sbjct 802 ACCATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGTATGGGGATACTTACCCAAGATTC 861 Query 995 TTCACCTATTGGACGTCGGATGCTTA-CCAAGCAACAGGATGCTATAACCTACTATGTTC 1053 || ||||| |||||||| ||||| || | || |||| || ||||| || | | ||||| Sbjct 862 TTTACCTACTGGACGTCCGATGCATATCGAA-CAACGGGTTGCTACAATTTGTTGTGTTC 920 Query 1054 TGGTTTTGTTCAAACAAACAATCGAATCGCAATTGGAGCGGCGATTTCGCC-CGTTTCGT 1112 ||||| |||||||| ||| ||||||||| |||||||| |||||||| || | || | Sbjct 921 CGGTTTCGTTCAAACCAACCGTCGAATCGCGATTGGAGCTGCGATTTCTCCTAG-ATCTT 979 Query 1113 CGTATAAAGGTGGACAATTCGATATAAGCTTATTGATATGGAAGGACCCAAAGCATGGAC 1172 ||||||||||||||||||||||||||||||| || || |||||||| || ||||| || | Sbjct 980 CGTATAAAGGTGGACAATTCGATATAAGCTTGTTAATTTGGAAGGATCCGAAGCACGGTC 1039 Query 1173 ATTGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCC--CGTATCTCTGTT 1230 | |||||||| ||||||||||| ||| || |||||||||||||||| ||| | ||| || Sbjct 1040 ACTGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGATATTGGCCTGCGT-T-TCTATT 1097 Query 1231 CACACACCTGAGGGAGCATGGAAACATGGTCCAGTTTGGTGGCGAGATCGTGAACACAC- 1289 ||| || || | | | ||||| | ||||||||| || || |||||||| ||||||| || Sbjct 1098 CACGCATCTAAAGCAACATGGGAGCATGGTCCAATTCGGCGGCGAGATTGTGAACA-ACC 1156 Query 1290 GACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTT 1349 |||| ||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||| Sbjct 1157 GACCCGGTGGTTCACACACTACGACCCAAATGGGAAGTGGCCATTTTGCCGGTGAAGGTT 1216 Query 1350 TTGGAAAAGCGTCTTACTTTA-GGAATCTTCAAATGGTAGATTGGGACAATACTCTTATT 1408 |||| ||||| ||||| ||| ||||||| ||||| || ||||||||||||||||||||| Sbjct 1217 TTGGTAAAGCATCTTA-TTTCCGGAATCTCCAAATCGTTGATTGGGACAATACTCTTATT 1275 Query 1409 CC-GATATCTAATCTTAAAG-TTCTTGCAGATCATCCTAATTGTTATGATATAAGAGGAG 1466 || | | || ||||| |||| |||| ||||||||||| |||||||||||||||||||| | Sbjct 1276 CCCGTT-TCGAATCT-AAAGATTCTCGCAGATCATCCCAATTGTTATGATATAAGAGGTG 1333 Query 1467 GGGTAAACCGTGTTTGGGGTAACtttttttATTACGGAGGACCGGGTAAAAACTCGAAAT 1526 || || ||||| |||||||||| ||||||||| ||||| || || |||||| | | || Sbjct 1334 GGACGAATCGTGTGTGGGGTAACTATTTTTATTATGGAGGTCCAGGAAAAAACCCTAGAT 1393 Query 1527 GTCCAT 1532 |||||| Sbjct 1394 GTCCAT 1399 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67419733650 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5