BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23350.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472595 jgi|Araly1|472595|fgenesh2_kg.1__2549__AT1G23350.1 715 0.0
> Ahg472595 jgi|Araly1|472595|fgenesh2_kg.1__2549__AT1G23350.1
Length=588
Score = 715 bits (387), Expect = 0.0
Identities = 494/544 (91%), Gaps = 14/544 (3%)
Strand=Plus/Plus
Query 42 tatatatacacaatatatataCGTTTCCGTGTATCTATCATACACACGATGTCTATCAAT 101
|||||| ||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 1 TATATACACACAATATATATACGTTTCCGTGTATATACCATACACACAATGTCTATCAAT 60
Query 102 CCGTATGTGACAATCTTCCTCCTCCTCGCCGCTACCTCAAG-C----CA----AGCGTTG 152
|| ||| |||| |||||||| || |||||||||||||||| | || |||||||
Sbjct 61 CCCTATATGACCATCTTCCT-CT--TCGCCGCTACCTCAAGCCAAAGCATGGCAGCGTTG 117
Query 153 AGTATTTCTCTAGCTGACCCCTGCACGGTGTCGGATTTTCCTGCATTGTGCAGAAGTACC 212
||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||
Sbjct 118 AGTCTTTCTCTCGCTGACCCCTGCACGGTCTCGGATTTTCCGGCATTGTGCAGAGGTACC 177
Query 213 ATTAAGGGTCAAACTAATGTGAATGCAGCGACGGATGTGGCCATAAAAGAGTTGATGAAG 272
||||||||||||||||||||||| |||||||||||||||||||| | |||| |||||||
Sbjct 178 ATTAAGGGTCAAACTAATGTGAACGCAGCGACGGATGTGGCCATTAGAGAGCTGATGAAA 237
Query 273 CGGACGAGGCAAGCC-AAGAAAATCGCGGAGAAAGAGCTGAAACGCGATGGAGGAGTCGC 331
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 CGGACGAGGCAAGCCAAAG-AAATCGCCGAGAAAGAGCTGAAACGCGATGGAGGAGTCGC 296
Query 332 GACTTGTTTGTCCAACTTCAATAGCGCGTTTGATAATTTGGAAAAGGCTCTTACAAACAT 391
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 297 GACTTGTTTGTCCAACTTCAATAGCGCGTTTGACAATTTGGACAAGGCTCTTACCAACAT 356
Query 392 TAAGGAAAATGATGGTTTTAGCCTTAACATTAACCTTAGCGCCGCCTTGACGGATTACGA 451
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 357 TAAGGAAAATGATGGTTTTAGCCTTAACATTAACCTTAGTGCCGCGTTGACGGATTACGA 416
Query 452 TACTTGCAGCGACTCGATGAAGGAAACTAAGGAGGTCAACGTCATTTATAAATCCGCCGG 511
||||||||||||| |||||||||||||| |||| ||||||||||||||||||| || ||
Sbjct 417 TACTTGCAGCGACGCGATGAAGGAAACTCGGGAGATCAACGTCATTTATAAATCTGCTGG 476
Query 512 GGTTTTGTACCGTATGGCTGATAATTGCTTGGCGCTTTCAACTCTCGTTAAACATTGATT 571
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 477 CGTTTTGTATAAAATGGCTGATAATTGCTTGGCGCTCTCAACCCTCGTTAAACATTGATT 536
Query 572 TTAA 575
||||
Sbjct 537 TTAA 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5