BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23360.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472598 jgi|Araly1|472598|fgenesh2_kg.1__2552__AT1G23360.1 1404 0.0
Ahg359112 jgi|Araly1|359112|fgenesh1_pg.C_scaffold_9000152 230 2e-59
> Ahg472598 jgi|Araly1|472598|fgenesh2_kg.1__2552__AT1G23360.1
Length=984
Score = 1404 bits (760), Expect = 0.0
Identities = 926/1003 (92%), Gaps = 24/1003 (2%)
Strand=Plus/Plus
Query 16 ACGGCCAAAAAATGGCGGCTC---TACTCGGTATCGTCTCTCCTGTGACTTTCACCGGAA 72
||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| |
Sbjct 1 ACGGCCAAAAAATGGCGGCTCTAGTACTTGGTATCGTCTCTCCGGTGACCTTCACCGGCA 60
Query 73 AGCACCCGG-TAAATTCCCGATCGCGACGGAGAACGGTAGTAAAATGCTCGAACGAACGC 131
||| | || |||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 61 AGC-TCTGGCCGAATTCCCGATCGCGACGGAGAATGGTAGTCAAATGCTCGAACGAACGC 119
Query 132 CGGATTCTCTTCAACCGCATTGCTCCAGTTTACGATAATTTGAATGATCTCTTAAGCTTA 191
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTATTCTCTTCAACCGCATTGCTCCAGTTTACGATAATTTGAATGATCTCTTAAGCTTA 179
Query 192 GGCCAGCATCGAATTTGGAAAAACATGGCTGTCTCATGGAGTGGAGCaaaaaaaGGAGAT 251
||||| |||||||||||||| |||||| |||| |||||||| ||||||| || |||||||
Sbjct 180 GGCCAACATCGAATTTGGAAGAACATGACTGTATCATGGAGCGGAGCAAGAACAGGAGAT 239
Query 252 TACGTTCTTGATTTGTGTTGTGGAAGTGGTGATTTAGCGTTTCTCTTATCTGAGAAAGTT 311
| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 240 AATGTTCTTGATTTGTGTTGTGGAAGTGGTGATTTAGCGTTTCTTTTGTCTGAGAAAGTT 299
Query 312 GGTTCAACTGGCAAGGTGATGGGCTTGGATTTCTCATCTGAACAACTAGCTGTTGCAGCA 371
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTTCAACCGGCAAGGTGATGGGTTTGGATTTCTCATCTGAACAACTAGCTGTTGCAGCA 359
Query 372 ACTAGACAGAGTCTTAAAGCAAGGTCTTGTTACAAGTGTATAGAGTGGATTGAAGGTGAT 431
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCTAGACAGAATCTTAAAGCAAGGTCTTGTTACAAGTGTATAGAGTGGATTGAAGGTGAT 419
Query 432 GCTATTGATTTGCCATTTGATGATTGTGAATTCGATGCGGTTACGATGGGTTATGGTCTT 491
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 GCTATTGATTTGCCATTTGATGATTGTGAATTCGATGCGATTACGATGGGTTATGGTCTT 479
Query 492 CGAAACGTTGTTGATAGACTTAGAGCTATGAAGGAGATGTATCGGGTTTTGAAACCAGGT 551
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAAACGTTGTTGATAGAGTTAGAGCTATGAAGGAGATGTATCGGGTTTTGAAACCAGGT 539
Query 552 TCAAGAGTATCTATACTTGATTTCAATAAGAGCAACCAATCCGTTACTACGTTTATGCAG 611
||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 540 TCAAGGGTGTCCATACTTGATTTCAATAAGAGCAACCAATCTGTTACGACGTTTATGCAG 599
Query 612 GGCTGGATGATTGACAATGTAGTTGTCCCTGTGGCTACTGTTTATGATCTTGCAAAGGAG 671
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 GATTGGATGATTGACAATGTAGTTGTCCCTGTGGCTACTGTTTATGGTCTTGCAAAGGAG 659
Query 672 TATGAATATCTCAAGTATTCAATCAATGGCTATCTAACAGGAGAAGAGCTAGAGACTCTT 731
||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 660 TATGAATATCTGAAGTATTCAATCAATGGGTACCTAACAGGAGAAGAACTAGAGACTCTT 719
Query 732 GCTCTAGAAGCTGGCTTCTCAAGTGCCTGCCATTATGAGATAAGCGGTGGTTTCATGGGG 791
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TCTCTAGAAGCTGGCTTCTCAAGTGCCCGCCATTATGAGATAAGCGGTGGTTTCATGGGG 779
Query 792 AATTTGGTCGCT-ATGAGGTAAAGGAATAGCGCGTTTGACTACACTTCTACACCAGATAT 850
|||||||||||| | |||||||| ||||| || ||| | || | |||||
Sbjct 780 AATTTGGTCGCTGA-GAGGTAAACGAATA-----TT---CTA---T---AC-C-AGATAG 822
Query 851 ATTGACACAATCTTTATCTGGATTTTTATAAGAAAAGAGAAACGCTTTGCGTTAGGATGA 910
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 ATTCACACTATCTTTATCTGGATTTTTATAAGAAAAGAGAAACGCTTTGCGTTAGGATGA 882
Query 911 TGCAGATAATGTAGAGGAATTCATTTTTATCTGTATAACTTACTTGTTTGATCAAACTGT 970
||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 883 TGCAGATAATGTAGAGGAATTG-TTTTTATCTGTATAATTTACTTCTTTGATCAAACTGT 941
Query 971 CAATGTAATCTGTTTCTGATCCCAACGATGATCATGAATCTTT 1013
|| |||||||||||||||||||||||||||| || ||||||||
Sbjct 942 CAGTGTAATCTGTTTCTGATCCCAACGATGACCACGAATCTTT 984
> Ahg359112 jgi|Araly1|359112|fgenesh1_pg.C_scaffold_9000152
Length=525
Score = 230 bits (124), Expect = 2e-59
Identities = 150/163 (92%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 550 GTTCAAGAGTATCTATACTTGATTTCAATAAGAGCAACCAATCCGTTACTACGTTTATGC 609
||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 176 GTTCAAGAGTATCCATACTTGATTTCAATAAGAGCAATCAATCTGTTACGACGTTTATGC 235
Query 610 AGGGCTGGATGATTGACAATGTAGTTGTCCCTGTGGCTACTGTTTATGATCTTGCAAAGG 669
||| ||||||||||||||||||||||||||||| | |||| |||||| |||||||||||
Sbjct 236 AGGATTGGATGATTGACAATGTAGTTGTCCCTGTAGTTACTATTTATGGTCTTGCAAAGG 295
Query 670 AGTATGAATATCTCAAGTATTCAATCAATGGCTATCTAACAGG 712
||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 296 AGTATGAATATCTGAAGTATTCAATCAATGGGTACCTAACAGG 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5