BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23380.2
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472599 jgi|Araly1|472599|fgenesh2_kg.1__2553__AT1G23380.2 1975 0.0
Ahg476175 jgi|Araly1|476175|fgenesh2_kg.2__1305__AT1G70510.1 525 3e-148
> Ahg472599 jgi|Araly1|472599|fgenesh2_kg.1__2553__AT1G23380.2
Length=1306
Score = 1975 bits (1069), Expect = 0.0
Identities = 1232/1310 (94%), Gaps = 13/1310 (1%)
Strand=Plus/Plus
Query 5 GCGGTTTCATATTATTCTTCTTCATCGATTCTTGATTTTGCAAGAAGACAATTCAAGAAA 64
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1 GCGGTTTCATATTATTTTTCTTCATCGATTCTTGATTTTTC-AGAAGACAATTCAAG-AA 58
Query 65 G-CGATTTAGAAGACGGAGGAGTTCTTACCGGAGATCTTATACTTATGGATGGAATGTAC 123
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 59 GACGATTTAGAAGACGGAGGAGTTCGCACCGGAGATCTTATACTAATGGATGGAATGTAC 118
Query 124 AATTTCCATTCGGCCGGTGATTATTCAGATAAGTCGGTTCTGATGATGTCACCGGAGAGT 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AATTTCCATTCGGCCGGTGATTATTCAGATAAGTCGGTTCTGATGATGTCACCGGAGAGT 178
Query 184 CTCATGTTTCCTTCCGATTACCAAGCTTTGCTATGTTCCTCCGCCGGTGAAAATCGTGTC 243
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 179 CTCATGTTTCCTTCTGATTACCAAGCTTTACTATGTTCCTCCGCCGGTGAAAATCATGTC 238
Query 244 TCTGATGTTTTCGGATCCGACGAGCTACTCTCAGTAGCCGTCTCCGCTTTGTCGTCGGAG 303
|||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||
Sbjct 239 TCTGATGTTTTCGGATCCGACGAGCTACTCTCAGCAGCCGCCTCCGCTTTATCTTCGGAG 298
Query 304 GCGGCTTCGATCGCTCCGGAGATCCGAAGAAATGATGATAACGTTTCTCTAACTGTCATC 363
|||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 299 GCGGCTTCTATCGCTCCAGAGATCCGAAGAAATGATGATAACGTTTCTTTAAGTGTCATC 358
Query 364 AA-AGCTAAAATCGCTTGTCATCCTTCGTATCCTCGCTTACTTCAAGCTTACATCGATTG 422
|| | | |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 359 AAGACC-AAAATCGCTTGTCATCCTTCGTATCCTCGCTTACTTCAGGCCTACATCGATTG 417
Query 423 CCAAAAGAAACAGGTCGGAGCACCACCGGAGATAGCGTGTTTACTAGAGGAGATTCAACG 482
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 418 CCAAAAGAAACAGGTCGGAGCACCACCGGAGATAGCGTGTTTGCTGGAGGAGATTCAACG 477
Query 483 GGAGAGTGATGTTTATAAGCAAGAGGTTGTTCCTTCTTCTTGCTTTGGAGCTGATCCTGA 542
|||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 478 GGAGAGTGATGTGTATAAGCAAGAAGTTGTTCCTTCGTATTGCTTTGGAGCTGATCCTGA 537
Query 543 GCTTGATGAATTTATGGAAACGTACTGCGATATATTAGTGAAATACAAATCGGATCTAGC 602
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 538 GCTTGATGAATTTATGGAAACGTACTGCGATATATTGGTGAAGTACAAATCGGATCTAGC 597
Query 603 AAGACCGTTTGACGAGGCAACGTGTTTCTTGAACAAGATTGAGATGCAGCTACGGAACCT 662
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAGACCGTTTGATGAGGCTACGTGTTTCTTGAACAAGATTGAGATGCAGCTACGGAACCT 657
Query 663 ATGTACTGGTGTCGAGTCTGCCAGGGGAGTTTCTGAGGATGGTGTAATATCATCTGACGA 722
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 658 ATGTACTGGTGTCGAGTCTGCCAGAGGAGTTTCTGAGGATGGTGCAATATCATCTGACGA 717
Query 723 GGAACTGAGTGGAGGTGATCATGAGGTAGCAGAGGATGGGAGACAAAGATGTGAAGACCG 782
|||||||||||||||||||||||| ||||||| ||||||| ||||||||| || |||||
Sbjct 718 GGAACTGAGTGGAGGTGATCATGAATTAGCAGAAGATGGGAAACAAAGATGCGAGGACCG 777
Query 783 GGACCTCAAAGATAGGTTGCTACGCAAATTTGGAAGCCGTATTAGTACTTTAAAGCTTGA 842
|| ||||| ||||||||||| |||||||||||||||||||| ||| |||||||||| ||
Sbjct 778 TGATCTCAAGGATAGGTTGCTTCGCAAATTTGGAAGCCGTATAAGTTCTTTAAAGCTGGA 837
Query 843 GTTCTcaaagaagaagaagaaaggaaagttaccaagagaagcaagacaagCTCTTCTTGA 902
||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 838 GTTTTCAAAGAAGAAAAAGAAAGGAAAGCTACCTAGAGAAGCAAGACAAGCTCTTCTTGA 897
Query 903 TTGGTGGAATCTCCATTATAAGTGGCCTTACCCTACTGAAGGAGATAAGATAGCATTAGC 962
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 898 TTGGTGGAATCTCCATTATAAGTGGCCTTACCCTACTGAAGGTGATAAGATAGCTTTAGC 957
Query 963 TGATGCAACGGGGTTAGACCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACG 1022
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGATGCAACGGGCTTAGACCAGAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACG 1017
Query 1023 TCATTGGAAGCCATCAGAGAATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATT 1082
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCATTGGAAACCATCCGAGAATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATT 1077
Query 1083 CTTTACCGAGGAATGAATTTATTTATGGTACTTATTTAACGTTGATTAAAA----GATGG 1138
||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||
Sbjct 1078 CTTTACCGAGGAATGAATTTATTTACCGTATTTATTTAACGTTGATAAAAAAAAAGATGG 1137
Query 1139 ATGTATAATTCTGCCTTGCTTTGCCGACAAAG--GaaaaaaaGAAAGAAAGAGTGAAGCA 1196
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1138 ATGTATAATTCTGCCTTGCTTTGCCGACAAAGAAGAAAAAAAGAAAGAGAGAGTGAAGCA 1197
Query 1197 TGG-ACGACACATGAAATGGATCTTACACTCACTCACATGTAGTAGAAGGAACAAGTCAA 1255
||| |||||||||||| || || |||||||||||||||||||| ||||||||||||||||
Sbjct 1198 TGGGACGACACATGAA-TGAATATTACACTCACTCACATGTAGGAGAAGGAACAAGTCAA 1256
Query 1256 AATGCTTTGTAACTATTATTATCGGTGAATAAAAATAACCTCTTTTGTCT 1305
||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1257 AATGCTTTGTAACTATTATTATCGGTGAATAAACATAACTTCTTTGGTCT 1306
> Ahg476175 jgi|Araly1|476175|fgenesh2_kg.2__1305__AT1G70510.1
Length=1071
Score = 525 bits (284), Expect = 3e-148
Identities = 619/778 (80%), Gaps = 34/778 (4%)
Strand=Plus/Plus
Query 336 TGATGATAACGTT-TCTCTAACTGTCATCAAAGCTAAAATCGCTTGTCATCCTTCGTATC 394
||||||||| || ||||| | |||||||||| | ||||||||||||||||||| |||||
Sbjct 177 TGATGATAA-TTTCTCTCTTAGTGTCATCAAATCCAAAATCGCTTGTCATCCTTTGTATC 235
Query 395 CTCGCTTACTTCAAGCTTACATCGATTGCCAAAAGAAACAGGTCGGAGCACC-ACCGGAG 453
||||||| || ||| | ||||||||||||| ||| |||| |||||||| | |||
Sbjct 236 CTCGCTTGCTCCAAACCTACATCGATTGCC-----AAA-AGGTGGGAGCACCTA-TGGAT 288
Query 454 ATAGCGTGTTTACTAGAGGAGATTCAACGGGAGAGTGATGTTTATAAGCA-AGAGGTTGT 512
||||||||| || | || |||||||| | |||| |||| || ||| | ||| ||||
Sbjct 289 ATAGCGTGTATATTGGAAGAGATTCAGCAAGAGAACCATGTGTACAAG-AGAGATGTTGC 347
Query 513 TCC-TTCTTCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTTATGGAAACGTACTGCG 571
||| || ||||||||||||| ||||||||||||||| ||||| |||||||| ||||| |
Sbjct 348 TCCATT-ATCTTGCTTTGGAGATGATCCTGAGCTTGACGAATTCATGGAAACCTACTGTG 406
Query 572 ATATATTAGTGAAATACAAATCGGATCTAGCAAGACCGTTTGACGAGGCAACGTGTTTCT 631
|||| || || ||||||||| | ||||| || || ||||| |||||||| | ||||
Sbjct 407 ATATTTTGGTTAAATACAAAGCCGATCTTGCGAGGCCGTTCGACGAGGCTGCAACTTTCA 466
Query 632 TGAACAAGATTGAGATGCAGCTACGGAACCTATGTACTGGTGTC-GAGTCTGCCAGGGGA 690
| |||||||| || ||||| || | |||||| || |||||| | | |||||| | |
Sbjct 467 TAAACAAGATCGAAATGCAACTTCAGAACCTGTGCACTGGT-CCAGCGTCTGCTACAGCT 525
Query 691 GTTTCTGAGGATGGTGTAATATCATCTGACGAGGAACTGAGTGGAGGTGATCATG-AGGT 749
|||| || ||||| | | |||||||||||||||||||| | || |||||| | |
Sbjct 526 CTTTCAGATGATGGCGCGGTTTCATCTGACGAGGAACTGAGAGAAGATGATCACGTA-AC 584
Query 750 AGCAG-AGGA-TGGGAGACAAAGATGTGAA-GACCGGGACCTCAAAGA-TAGGTTGCTAC 805
||| | |||| | | |||| || | || |||||||| || || || | | | ||||
Sbjct 585 AGC-GCAGGACAGCCA-ACAACGAAG-CAATGACCGGGATCTGAAGGACCA-GCTACTAC 640
Query 806 GCAAATTTGGAAGCCGTATTAGTACTTTAAAGCTTGAGTTCTcaaagaagaagaagaaag 865
| ||||| || |||| ||| ||| | || ||||| |||||||| ||||||||||||||||
Sbjct 641 GTAAATTCGGTAGCCATATCAGTTCATTGAAGCTCGAGTTCTCTAAGAAGAAGAAGAAAG 700
Query 866 gaaagttaccaagagaagcaagacaagCTCTTCTT-GATTGGTGGAATCTCCATTATAAG 924
| |||||||||||||||||||||||||| || || |||||||||||| | ||||||||
Sbjct 701 GGAAGTTACCAAGAGAAGCAAGACAAGC-GTTGTTCGATTGGTGGAATGTTCATTATAAA 759
Query 925 TGGCCTTACCCTACTGAAGGAGATAAGATAGCAT-TAGCT-GATGCAACGGGGTTAG-AC 981
||||||||||| |||||||| || || ||||| | | ||| || | ||| || || | |
Sbjct 760 TGGCCTTACCCCACTGAAGGTGACAAAATAGC-TCTGGCTGGA-GAAACAGGATT-GAAT 816
Query 982 CAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGTCATTGGAAGCCATCAGAG 1041
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 817 CAAAAGCAAATCAACAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGAG 876
Query 1042 AATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATTCTTTACCGAGGAATGAA 1099
|| ||||| |||| ||||||||||||||||| || | ||||||| |||||||||||||
Sbjct 877 AACATGCCGTTCGATATGATGGATGATTCTAATGAAACATTCTTAACCGAGGAATGAA 934
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48835456677
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5