BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23390.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472601 jgi|Araly1|472601|fgenesh2_kg.1__2555__AT1G23390.1 1552 0.0
> Ahg472601 jgi|Araly1|472601|fgenesh2_kg.1__2555__AT1G23390.1
Length=1202
Score = 1552 bits (840), Expect = 0.0
Identities = 1085/1201 (90%), Gaps = 25/1201 (2%)
Strand=Plus/Plus
Query 56 GGAGAAGAAGAAAG-TTCCATTGACGGAGACATACTCGAGTCAATCCTCTCCTATTTACC 114
|||| ||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 10 GGAGGAGAAG-AAGTTTCCATTGACGGAGACATACTCGAATCAATCCTCTCCTATTTACC 68
Query 115 ACTCCTAGACCTCGATTCCGCTTGCCAAGTCTCCAAATCATGGAACCGCGCCGTCTT-TT 173
|||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 69 ACTCCTCGACCTCGATTCCGCTTGCCAAGTGTCCAAACCATGGAACCGCGCCGTCTTCTT 128
Query 174 ACTCCCTCCGCCGCCTTAAAACCATGCCGTGGTTGTTCGTCTACAACCAGAGAAATTCTC 233
||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 129 -CTCCCTCCGCCGCCTTAAATCCATGCCGTGGTTGTTCGTTTACAATCAGAGAAATTCTC 187
Query 234 CGCCGTACACCATGGCGACGATGGCGATGGCTTATGATCCCAAGTCCGAG-GCCTGGATC 292
|||||||||||||| || |||||||||||||||||||||| |||| || | | ||||||
Sbjct 188 CGCCGTACACCATGCCGGCGATGGCGATGGCTTATGATCCGAAGT-CGGGTGAATGGATC 246
Query 293 GAGCTCAACACCG---CATCATCTCCCGTCGAACACGTCTCCGTTGCTCGATCCTCTCAC 349
|||||||| | || ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 247 GAGCTCAAAAACGTATCATCATCTCCCGTCGAACACGTCTCCGTTGCTCGATCTTCTCAC 306
Query 350 TCCACGTTGCTCTACGCTTTATCTCCGGCGAGATTCTCTTTCTCAACCGACGCGTTTCAT 409
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 307 TCCGCGTTGCTCTACGCTTTATCTCCGGCGAAATTCTCTTTCTCAATCGACGCGTTTCAT 366
Query 410 CTGACTTGGCAACACGTGGCACCGCCGAGAGTTTGGAGGATCGATCCAATCGTGGCTGTA 469
|||||||||| |||||||||||| |||||||| |||||||||||||||||||| || ||
Sbjct 367 CTGACTTGGCGACACGTGGCACCACCGAGAGTGTGGAGGATCGATCCAATCGTCGCCGTC 426
Query 470 GTCGGACGGAGCCTGATTATAGCCGGAGGTGTGTGCGATTTCGAGGAGGATAGATTCGCC 529
|| ||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 427 GTTGGACGGAACCTGATCGTTGCCGGAGGTGTGTGCGATTTCGAGGAGGATAGATTTGCC 486
Query 530 GTGGAGCTGTTCGACATCGAATCCGGAGACGGAGCGTGGGAGAGATGCGAATCGATGCCA 589
|||||| || | || |||||||| | ||||| | ||||||||||||||||||||||||
Sbjct 487 GTGGAGTTGCTGGATGTCGAATCCAGCGACGGCGAGTGGGAGAGATGCGAATCGATGCCG 546
Query 590 GATTTTCTCTACGAATCCGCGT-CGTCCACGTGGCTTTCCGTAGCGGTGAGTTCGGAGAA 648
|||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct 547 GATTTTCTCTACGAATCCGCGTCCG-CCACGTGGCTTTCCGTCGCGGTGAGTTCGGAGAA 605
Query 649 GATGTACGTGACGGAGAAGAGATCAGGCGTTACGTGTAGTTTCAATCCAGTAACTAGATC 708
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 606 GATGTACGTGACGGAGAAGAGATCAGGCGTTACGTGTAGTTTCGATCCAGAAACTAGATC 665
Query 709 GTGGACGAAGCTTCTCGATCTCTGTCCCGGCGAGTGTAGCTTATACTCACGTTCGATTGG 768
|||||| ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 666 GTGGACAAAGCTTCCCGATCTTTGTCCCGGCGAGTATAGTTTATACTCACGTTCGATTGG 725
Query 769 ATTCTCCGTTAATCGTTTAATTATGGCTGGGATCATCGGAGATGAATATAATCCGACGGG 828
|||||||| ||| ||| |||| |||||||||||||||||||| || |||||||||||||
Sbjct 726 ATTCTCCGGTAACCGTCTAATCATGGCTGGGATCATCGGAGACGAGGATAATCCGACGGG 785
Query 829 AATCGAACTGTGGGAAGTTATAGAT-TCTGACGAATCGC--AT---T-TGAAATTCGAGT 881
| ||||||| ||||| ||||||| | || |||||||||| || | |||||||||| |
Sbjct 786 ACTCGAACTATGGGACGTTATAG-TCTCCGACGAATCGCCGATGAATCTGAAATTCGAAT 844
Query 882 CGATCGGATCTATGCCTGAGACGTATTTGGAGAAACTAAGAGGGATTAATTCTGATTGGC 941
|||| ||||||||||| || ||| ||| || || || ||||| | | ||||||||||||
Sbjct 845 CGATTGGATCTATGCCAAAGCCGTGTTTCGATAAGCTCAGAGGAACTGATTCTGATTGGC 904
Query 942 CGTTAACGTCGATAGTGTTGAACGCGGTGGGAGATATGGTTTATGTACATGGTGCGGCGG 1001
|||||||||| |||| ||||||| |||||||||||||||||||| |||| | ||||||||
Sbjct 905 CGTTAACGTCCATAGCGTTGAACACGGTGGGAGATATGGTTTATATACACGATGCGGCGG 964
Query 1002 AGAACGGCGGAGAGATTGTTGCGGCGGAGATTGAAGGAGGAAAGCTTTGTAAGTGGAGGA 1061
||||||||||||| || || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 965 AGAACGGCGGAGATATAGTGGCGGCGGAGATTGATGGAGGAAAGCTTTGTAAGTGGAGAA 1024
Query 1062 CTTTGCCAAACGCAGACGCTACTTGGa--aa-aaaaGTCACGCGGCTGAGAGAGTAATCG 1118
||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||
Sbjct 1025 CTTTGCCAAACGCAGACGCTACTTGGATTAATAAAAGTCACGCGGGTGAGAGAGTTATCG 1084
Query 1119 TTGCGTGTTCAAACGTTGGTTTTAGCGATTTGAAACTTGCGTTTAGGAATAATTTGAGTT 1178
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1085 TTGCGTGTTCAAACGTTGGTTTTAGCGATTTGAAACTTGCGTTTAGGAATCATTTGAGTT 1144
Query 1179 TTCTCTCAACGTCAAAATATTGAATTTAATCGTGTCCGTTAAATTCAAAGCTTCTAGTCA 1238
| ||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1145 T-CTC--AACGTCAACATATTGAATGTAATCGTGTCCGTTAAATTCAAAGTTTCTAGTCA 1201
Query 1239 C 1239
|
Sbjct 1202 C 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5