BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23400.1
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335585 jgi|Araly1|335585|fgenesh1_pg.C_scaffold_1002150 2601 0.0
> Ahg335585 jgi|Araly1|335585|fgenesh1_pg.C_scaffold_1002150
Length=1698
Score = 2601 bits (1408), Expect = 0.0
Identities = 1605/1701 (94%), Gaps = 9/1701 (1%)
Strand=Plus/Plus
Query 5 ATGGCGATTGTAGCATCACTAAGAGATATTAATCTCTTCTCTTCACTTCCTTCAACGCCT 64
||||||||||||||||||||| |||| |||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGCGATTGTAGCATCACTACGAGACATTAATCTCTTCTCTTCACTCCCTTCAACACCT 60
Query 65 CCAATGGCGGATTCATCATCAGGAACATTCCGGCCAGCTCCGCCGATACCGATTCCCAAA 124
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 61 CCAATGGCGGATTCATCATCAGGAACTTTCCGGCCAGCTCCGCCGATACCGATTCCGAAA 120
Query 125 TACGCACCATCCAATAGAAATCGTAATCAGAAAACT-A--ATC--A-TCAAACCGATACA 178
||| ||||||| |||||||||||||||| ||||||| | ||| | |||||||||||||
Sbjct 121 TACTCACCATCTAATAGAAATCGTAATCGGAAAACTAATCATCAAATTCAAACCGATACA 180
Query 179 AACCCGAAGAAACCACAATCAAATCCAGCTCTTAAGCTTCCGCATCACCGAACCAGATAC 238
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 CAGCCGAAGAAACCACAATCAAATCCGGCTCTCAAGCTTCCGCATCACCGAACCAGATAC 240
Query 239 TACAAACCGGTTAAGGAAGGAGTTATCTCCTCAGACGGTGACCGCACAATCTTAATCGGC 298
||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| |||
Sbjct 241 TACAAACCGGTTAAGGAAGGAGTTATCTCTTCAGACGGCGACCGCACAATCGTAATTGGC 300
Query 299 GATTCCGGCGTCTCGTATCAGCTTCCCGGTGCACCGTTCGAGTTTCAATTCAGCTATTCT 358
|| ||||| |||||||||||||||||||| || |||||||||||||| ||||| || |||
Sbjct 301 GAATCCGGTGTCTCGTATCAGCTTCCCGGCGCGCCGTTCGAGTTTCAGTTCAGTTACTCT 360
Query 359 GAGACACCGAAAGTTAAACCGGTTGGGATTCGTGAACCGGCTTTTATGCCGTTTGCTCCA 418
||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 GAGACACCGAAAGCTAAACCGGTTGGGATTCGTGAACCGGCGTTTATGCCGTTTGCGCCA 420
Query 419 CCGACGATGCCGAGACCGTGGACTGGGAAAGCACCGTTGAAGAAATCGAAGAAGAAGATT 478
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CCGACGATGCCGAGACCGTGGACTGGGAAAGCACCGTTGAAGAAATCAAAGAAGAAGATT 480
Query 479 CCATTGTTTGATTCTTTTAATCCACCGCCGGCGGGAAAATCTGGAGTTAAGTATGTAGAA 538
|| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CCGTTGTTTGATTCATTCAATCCACCACCGGCGGGAAAATCTGGAGTTAAGTATGTAGAA 540
Query 539 ATGCCTGGGCCGTTACCGTTTGGGAGGTATCCAAAGGAAGGAATGAATAGAGAAGAGGTT 598
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 ATGCCTGGGCCGTTGCCGTTTGGGAGGTATCCAAAGGAAGGAATGAATAGAGAAGAGATT 600
Query 599 TTAGGAGAGCCATTGAAGAGATGGGAGAAAGGAATGTTGATTAAGCCTCATATGCATGAT 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTAGGAGAGCCATTGAAGAAATGGGAGAAAGGAATGTTGATTAAGCCTCATATGCATGAT 660
Query 659 AATCGTCAGGTTAATTTGGGTAGAGATGGATTTACACATAATATGTTGGAATTGATACAT 718
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCGTCAGGTTAATTTGGGAAGAGATGGATTTACACATAATATGTTGGAATTGATACAT 720
Query 719 TCGCATTGGAAGAGACGACGTGTTTGTAAAGTTCGATGTAAAGGAGTTCCTACTGTGGAT 778
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGCATTGGAAGAGACGACGTATTTGTAAAGTTCGATGTAAAGGAGTTCCTACTGTGGAT 780
Query 779 ATGAATAACGTGTGTCGTGTTCTTGAGGAAAAGACAGGAGGAGAGATCATTCATAGAGTT 838
||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 781 ATGGATAACGTGTGTCGTGTTCTTGAGGAAAAGACAGGAGGAGAGATTATTCACAGAGTT 840
Query 839 GGAGGTGTGGTGTACCTTTTCAGGGGTAGGAATTACAATTACCGTACACGTCCGCAGTAC 898
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||
Sbjct 841 GGAGGTGTGGTGTACCTCTTCAGGGGTAGAAATTACAATTATCGCACACGTCCGCAATAC 900
Query 899 CCATTGATGTTGTGGAAACCAGCAGCTCCTGTTTATCCAAAGCTTATTCAAGAAGTTCCT 958
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 CCGTTGATGTTGTGGAAGCCAGCAGCTCCTGTTTATCCAAAGCTCATTCAAGAAGTTCCT 960
Query 959 GAAGGATTGACGAAAGAGGAAGCTCATGAGTTCAGGGTGAAGGGAAAGTCTCTTAGGCCT 1018
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 961 GAAGGATTGACGAAAGAGGAAGCTCATGAGTTCAGGGTGAAGGGCAAGTCTCTTAGACCC 1020
Query 1019 ATATGCAAGTTGTCTAAAAATGGAGTTTACGTGTCGCTAGTCAAAGATGTGAGGGATGCC 1078
|| |||||||||||||||||||| || |||||||| |||||||| ||||| |||||||||
Sbjct 1021 ATTTGCAAGTTGTCTAAAAATGGGGTCTACGTGTCACTAGTCAAGGATGTTAGGGATGCC 1080
Query 1079 TTTGAACTGAGTTCATTGGTGAAAGTCGACTGCCCAGGGCTTGAACCAAGTGATTATAAG 1138
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 TTTGAACTGAGTCCCTTGGTGAAAGTCGACTGCCCAGGACTTGAACCAAGTGATTATAAG 1140
Query 1139 AAAATTGGCGCTAAGCTCAAGGAGTTAGTTCCTTGTGTGCTTCTGTCTTTCGATGATGAG 1198
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1141 AAAATAGGCGCTAAACTTAAGGAGTTAGTTCCATGTGTGCTTCTGTCTTTCGATGATGAG 1200
Query 1199 CAAATACTCATGTGGAGAGGACGAGAATGGAAGTCGCGGTTTGTAGACAATCCTCTAATT 1258
||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1201 CAAATACTCATGTGGAGGGGACGAGATTGGAAGTCGCGGTTTGTAGACAATCCTTTAATT 1260
Query 1259 CCAAGCCTTTCTGAGACCAACACAACGAACGAACTTGATCCCTCAGACAAACCTAGTGAA 1318
|||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 1261 CCAAGCCTTTCTGAAACCAACATAGCGAACGAACTTGATCCCTCAGACAAACCCAGTGAC 1320
Query 1319 GAACAAACTGTGGCTAATCCAAGTACAACGATCTCAAGCCCCAAAATGATCTCGCTCTGG 1378
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1321 GAACAAACTGTGTCTGATCCAAGTTCAACGATCTCAAGCCCCAAAATGATCTCGCTCTGG 1380
Query 1379 CAACGAGCGTTGGAATCGTCGAAGGCTGTGATTCTTGAAGAGCTTGACCTCGGTCCAGAC 1438
||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 1381 AAACGAGCATTGGAATCGTCCAAGGCGGTGATTCTTGAAGAGCTTGACCTTGGTCCGGAC 1440
Query 1439 GATCTATTGAAGAAGGTGGAAGAGTTAGAAGGCACTTCACTGGCTGCAGAACACACTTAC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GATCTATTGAAGAAGGTGGAAGAGTTAGAAGGCACTTCACTGGCTGCAGAACACACTTAC 1500
Query 1499 ACAGCTATGGTCTTGTCAAATACTGATGGTGCAGCAGAGGATTACGTGGATGAAAAGGAC 1558
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1501 ACAGCTATGGTCTTGTCGAATACTGATGGTGCAGCAGAGGATTACGTGGATGACAAGGAC 1560
Query 1559 CGGTCCGAAGAGTATTATAGTGACATAGACGATGACTTTGATGACGAGTGTTCCGATGAT 1618
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 CGGTCCGAAGAGTAT-A--GTGACATAGACGATGACTTTGATGACGAGTGTTCCGATGAT 1617
Query 1619 GAGTCGCTAGATCCGGTTGGTCCAGTGGGATCTTTACCCGTTGACAAGATAGTTAGGAAG 1678
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1618 GAGTCGCTAGATCCGGTTGGTCCAGTGGGAACTTTGCCCGTTGACAAGATAGTTAGGAAG 1677
Query 1679 TTGAGGGAAAGACTAAAATAG 1699
||||||| ||||||||||||
Sbjct 1678 CTGAGGGAGAGACTAAAATAG 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68410080020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5