BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23410.1
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1 869 0.0
Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1 425 1e-118
Ahg935699 jgi|Araly1|935699|scaffold_403687.1 361 4e-99
> Ahg472603 jgi|Araly1|472603|fgenesh2_kg.1__2557__AT1G23410.1
Length=590
Score = 869 bits (470), Expect = 0.0
Identities = 564/606 (93%), Gaps = 20/606 (3%)
Strand=Plus/Plus
Query 7 AAACAAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGT 66
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGT 60
Query 67 AGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCC 126
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCC 120
Query 127 ACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGC 186
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 121 ACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGC 180
Query 187 TGATTACAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTGC 246
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TGATTACAACATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGTGC 240
Query 247 GAAGAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACAAGAA 306
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 241 GAAGAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATAAGCATAAGAA 300
Query 307 AGTGAAGCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGAGGTT 366
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 AGTGAAGCTAGCGGTTTTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTT 360
Query 367 GAAGAAAGAGTGTCCTTCTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCATTTCGA 426
|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 361 GAGGAAAGAGTGTCCTTCTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGA 420
Query 427 TAGGCATTATTGTGGGAAATGTGGAACTACTTACGTGTTCAAGAAGGCTGATGAAGAGT- 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAGGCATTATTGTGGGAAATGTGGAACTACTTACGTGTTCAAGAAGGCTGATGAAGAGTG 480
Query 486 AGGTTATGTCTTTTTG-CTTTTGGAATTTAGATTGttttttttttAATTCAGATATTTTG 544
||| ||| ||||||| |||| ||||||| | |||||||||||||||
Sbjct 481 AGGCTATCTCTTTTTTACTTT-GGAATTT---T------------AATTCAGATATTTTG 524
Query 545 AGATGGTTTTATACTATTGAGGGATGGTTT-AATTGTTGCAT-AATACATTATATTATCT 602
|||||||||| | ||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct 525 AGATGGTTTTGTTCTATTGAGGGATGGTTTTAATTATTGCATTAATACATTATATTATCT 584
Query 603 TTGATT 608
||||||
Sbjct 585 TTGATT 590
> Ahg486730 jgi|Araly1|486730|fgenesh2_kg.5__2722__AT3G62250.1
Length=650
Score = 425 bits (230), Expect = 1e-118
Identities = 380/453 (84%), Gaps = 7/453 (2%)
Strand=Plus/Plus
Query 14 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAATC 72
||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 41 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATC 100
Query 73 ATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 132
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 GTCCGATACCATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGA 160
Query 133 TCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGATTA 192
||||| || ||||| |||||||| ||||| ||||||| || | || || || || ||
Sbjct 161 CCAGCAGCGATTGATTTTCGCCGGGAAACAGCTGGAAGACGGCCGTACCCTCGCCGACTA 220
Query 193 CAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTGCGAAGAA 252
|||||||||||| ||||||||||||||| |||| || ||||| | || ||||| |||||
Sbjct 221 CAACATCCAGAAGGAGTCGACGCTTCATCTGGTCCTCCGTCTCCGTGGTGGTGCTAAGAA 280
Query 253 GAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACAAGAAAGTGAA 312
||||||||||||||| ||||| || || |||||||| ||||||| ||| ||||| || ||
Sbjct 281 GAGGAAGAAGAAGACTTACACCAAGCCGAAGAAGATCAAGCATAAGCATAAGAAGGTTAA 340
Query 313 GCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGAGGT-TGAAGA 371
||| || ||||| ||||||||||| | |||||| ||| ||||||||| | | ||| ||
Sbjct 341 GCTCGCTGTTCTTCAGTTTTACAAAATCGATGGATCTGGAAAAGTTCAGCG-TCTGAGGA 399
Query 372 AAGAGTGTCCTT-CTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCATTTCGATAGG 430
||||||| ||| | | | |||||| |||| |||||||||||||||||||| ||| |
Sbjct 400 AAGAGTGCCCTAAC-GCAACTTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATCGC 458
Query 431 CATTATTGTGGGAAATGTGGAACT-ACTTACGT 462
||||| ||||| || |||||| || || |||||
Sbjct 459 CATTACTGTGGTAAGTGTGGA-CTCACCTACGT 490
> Ahg935699 jgi|Araly1|935699|scaffold_403687.1
Length=525
Score = 361 bits (195), Expect = 4e-99
Identities = 367/450 (82%), Gaps = 12/450 (3%)
Strand=Plus/Plus
Query 6 CAAACAAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAAC-CTTAGAG 64
|||| || || ||||||||||||||||||||||||||||||||||| || || ||| |||
Sbjct 12 CAAA-AA-AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTT-GAG 68
Query 65 GTAGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATC 124
|| || || || ||||| ||||||||||| || || |||||||||||||||||||| |||
Sbjct 69 GTCGAGTCCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATC 128
Query 125 CCACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACT- 183
|||||||| ||||| || ||||| ||||||||||| || | ||||| ||| | || ||
Sbjct 129 CCACCGGACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTAC-CTT 187
Query 184 AGCTGATTACAACATCCAGAAAGAGTCGACGCTTCAT-TTGGTTCTACGTCTGAGAGGAG 242
||| ||||||||||||||||| || || |||||||| ||| | || ||||| | || |
Sbjct 188 AGCCGATTACAACATCCAGAAGGAATCAACGCTTCACCTTG-TCCTTCGTCTCCGTGGTG 246
Query 243 GTGCGAAGAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACA 302
|||| |||||||||||||||||||| ||||| || || |||||||| ||||| | |||||
Sbjct 247 GTGCTAAGAAGAGGAAGAAGAAGACCTACACCAAGCCGAAGAAGATCAAGCACAAGCACA 306
Query 303 AGAAAGTGAAGCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGA 362
|||| || ||||| || ||||| ||||| |||||||||||||| ||| || ||||||
Sbjct 307 AGAAGGTCAAGCTCGCTGTTCTTCAGTTCTACAAGGTTGATGGCTCTGGTAAGGTTCAGC 366
Query 363 GGT-TGAAGAAAGAGTGTCCTT-CTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCA 420
| | ||| ||| ||||| ||| | | || |||||| |||| ||||||||||| || ||
Sbjct 367 G-TCTGAGGAAGGAGTGCCCTAAC-GCTACCTGTGGTGCTGGGACTTTCATGGCTAGCCA 424
Query 421 TTTCGATAGGCATTATTGTGGGAAATGTGG 450
||||||| | || || ||||| || |||||
Sbjct 425 TTTCGATCGTCACTACTGTGGTAAGTGTGG 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22225660611
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5