BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23420.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335587 jgi|Araly1|335587|fgenesh1_pg.C_scaffold_1002152 1194 0.0
> Ahg335587 jgi|Araly1|335587|fgenesh1_pg.C_scaffold_1002152
Length=711
Score = 1194 bits (646), Expect = 0.0
Identities = 689/710 (97%), Gaps = 1/710 (0%)
Strand=Plus/Plus
Query 51 GACAACACTCAACCATCTATTTGATCTGCCGGGGCAGATTTGCCATGTCCAGTGTGGTTT 110
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 3 GACAACACTCAACCATCTGCTTGATCTGCCGGGGCAGATTTGCCATGTCCAATGTGGTTT 62
Query 111 TTGCACCACTATTTTGCTGGTGAGTGTACCGTTTACAAGCTTGTCAATGGTGGTGACTGT 170
||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 63 TTGCACCACTATTTTACTGGTGAGTGTACCCTTCACAAGCTTGTCAATGGTAGTGACTGT 122
Query 171 GAGATGTGGGCATTGCACAAGCCTTCTCTCTGTCAATTTGATGAAGGCTTCCTTCATTCC 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 GAGATGTGGGCATTGCACAAGCCTTCTCTCTGTCAATTTGATGAAGGCTTCCTTTATTCC 182
Query 231 TCTCCATCTCCTTGCTTCTCTCTCCCATCTTGATGAGACCGGGAAAGAGGAGGTTGCAGC 290
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 183 TCTCCATCTCCTTGCTTCTCTGTCCCATCTTGATGAGACGGGGAAAGAGGAGGTTGCAGC 242
Query 291 TACAGATGGTGTGGAAGAAGAAGCATGGAAGGTGAATCAGGAGAAGGAGAACAGTCCAAC 350
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TACGGATGCTGTGGAAGAAGAAGCATGGAAGGTGAATCAGGAGAAGGAGAACAGTCCAAC 302
Query 351 GACTTTGGTTTCATCTTCAGACAATGAAGATGAAGATGTGTCTCGTGTTTACCAAGTTGT 410
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 GACTTTGGTTTCATCTTCAGACAATGAAGATGAAGATGTCTCTCGTGTTTACCAAGTTGT 362
Query 411 CAATAAACCACCTGAGAAGCGACAAAGAGCTCCTTCAGCTTACAATTGCTTCATCAAGGA 470
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CAATAAACCTCCTGAGAAACGACAAAGAGCTCCTTCAGCTTACAATTGCTTCATCAAGGA 422
Query 471 AGAGATCAGGAGGTTAAAGGCTCAGAATCCAAGCATGGCTCACAAGGAAGCTTTCAGCTT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AGAGATCAGGAGGTTAAAGGCTCAGAATCCAAGCATGGCTCACAAGGAAGCTTTCAGCTT 482
Query 531 AGCTGCCAAAAATTGGGCCCATTTTCCTCCAGCTCACAACAAGAGAGCTGCTTCAGATCA 590
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 AGCTGCCAAAAATTGGGCCCATTTTCCTCCAGTTCACAACAAGAGAGCTGCTTCAGATCA 542
Query 591 ATGTTTTTGTGAGGAAGATAACAATGCGATACTACCATGCAATGTTTTTGAGGACCATGA 650
||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 543 ATGTTTTTGTGAGGAAGATAACAATGCAATTCTACCATGCAATGCTTTTGAGGACCATGA 602
Query 651 AGAAAGCAATAATGGGTTCCGAGAGAGAAAGGCTCAGAGGCATTCCATTTGGGGAAAATC 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AGAAAGCAATAATGGGTTCCGAGAGAGAAAGGCTCAGAGGCATTCCATTTGGGGAAAATC 662
Query 711 TCCATTTGAGTAATAACAATTTGGGATATGAAAATTTAACaaaaaaaTAA 760
|||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 663 TCCATTTGAGTA-TAACAATTTGGGATATGAAATTTTAACAAAAAAATAA 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5