BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G23440.1

Length=1016
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912213 jgi|Araly1|912213|Al_scaffold_0001_2467                   1070    0.0  


> Ahg912213 jgi|Araly1|912213|Al_scaffold_0001_2467
Length=654

 Score = 1070 bits (579),  Expect = 0.0
 Identities = 629/654 (96%), Gaps = 0/654 (0%)
 Strand=Plus/Plus

Query  142  ATGGGTTCTGAAGGACCAAAAGCAATAACGATTCATGTGACTGGTTTCAAGAAATTTCTT  201
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATGGGTTCTGAAGGACCAAAAGCAATAACGATTCATGTTACTGGTTTCAAGAAATTTCTT  60

Query  202  GGGGTTTCAGAGAATCCTACTGAGAAGATAGCTAATGGTTTGAAATCGTATGTGGAGAAA  261
            |||||||| ||||||||||||||||| ||||||| |  | ||||||| ||||||||||| 
Sbjct  61   GGGGTTTCTGAGAATCCTACTGAGAAAATAGCTACTAATCTGAAATCTTATGTGGAGAAG  120

Query  262  CGAGGTTTGCCTTCTGGATTGTGTCTTGGTAGCTGTAGTGTTCTTGACACTGCTGGGGAA  321
            ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| 
Sbjct  121  CGAGGATTGCCTTCTGGGTTGTGTCTTGGTAGCTGCAGTGTTCTTGATACTGCAGGGGAT  180

Query  322  GGTGCAAAATCTAAGCTTTATGAGGTTTTGGAGTCTAGTGTTGTCTCTGGAGATAAGAAC  381
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  GGTGCAAAGTCTAAGCTTTATGAGGTTTTGGAGTCTAGTGTTGTGTCTGGAGATAAGAAC  240

Query  382  AACAATGGAACTGTTGTCTGGCTTCATCTCGGGGTGAATAGCGGAGCGACAAAATTCGCC  441
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  241  AACAATGGAACTGTTGTCTGGCTTCATCTCGGGGTGAATAGTGGAGCGACAAAATTCGCC  300

Query  442  ATTGAAAGACAGGCAGTGAACGAAGCTCATTTCCGTTGTCCTGATGAATTGGGCTGGCAA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATTGAAAGACAGGCAGTGAACGAAGCTCATTTCCGTTGTCCTGATGAATTGGGCTGGCAA  360

Query  502  CCGCAGCGGCTTCCCATAGTTGTTGAAGATGGAGGCATTTCAAAGGCAAAAGAGACTTCA  561
            || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct  361  CCACAGCGGCTTCCCATAGTTGTTGAAGATGGAAGCATTTCAAAGGCAAAAGAGACTTCG  420

Query  562  TGCTCGACGGAGTCCATTTTCCAGTTATTAAAGAAGAAAGGCTTTGAGGTTGTTCAATCA  621
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  421  TGCTCGACGGAGTCCATTTTCCAGTTATTAAAGAAGAAAGGCTTCGAGGTAGTTCAATCA  480

Query  622  GACGATGCTGGACGTTTTGTATGCAACTACGTGTACTATCACTCTCTAAGGTTCGCAGAG  681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GACGATGCTGGACGTTTTGTATGCAACTACGTGTACTATCACTCTCTAAGGTTCGCAGAG  540

Query  682  CAAAAGGGACACAAGTCTCTGTTCGTTCACGTTCCTCTCTTCTCCAAAATCGATGAAGAT  741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  CAAAAGGGACACAAGTCTCTGTTCGTTCACGTTCCTCTCTTCTCCAAAATCGATGAAGAT  600

Query  742  ACTCAAATGCAGTTCGTGGCTTCACTCTTGGAGGCAATTGCAGCTACTTGCTAG  795
            |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  601  ACTCAAATGCAGTTCGTGGCCTCACTCTTGGAAGCAATTGCAGCTACTTGCTAG  654



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37779810747


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5