BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23450.1
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 3005 0.0
> Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995
Length=3405
Score = 3005 bits (1627), Expect = 0.0
Identities = 1865/1982 (94%), Gaps = 7/1982 (0%)
Strand=Plus/Plus
Query 1 ATGCGAGGGGCTCAAGCTTTATACTTTCTTCGTAGAACAACGACTTTAGCTCAACATTTG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCGAGGGGCTCAAGCTTTATACTTTCTTCGTAGAACAACGACGTTAGCTCAACATTTG 60
Query 61 TGTTCTCTTACACCGTTTATTGCGACGCCTCGTATGGATTTTAGTTCGTTTCTTGAAGAG 120
||| ||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 61 TGTCCTCTTGCACCGCTTATTGTGACGCCTCGTATGGAGTTTAGTTCGTTTCTTGAAGAA 120
Query 121 AACCCTAGCGACCTTGTTTATACCCATAACCGTAGAATTGATGAATTGATTAAATCCGGG 180
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AATCCTAGCGACCTCGTTTATACCCATAACCGTAAAATTGATGAATTGATTAAATCCGGG 180
Query 181 AACTTGTTATCTGCACATGAAGCGTTCGATGAAATGTCTGTACGAGATGTTGTTACTTAT 240
|||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 181 AACTTGGTATCTGCACATGAAGTGTTCGATGGAATGTCTGTACGAGATGTTGTTACTTAT 240
Query 241 AATCTTCTTATTTCTGGGAATAGTAGATATGGGTGTTCTTTAAGAGCTATAGAACTCTAC 300
|||||||||||||||||||||||| || |||||||||||||||||||||| ||| | ||
Sbjct 241 AATCTTCTTATTTCTGGGAATAGTCGAAATGGGTGTTCTTTAAGAGCTATTGAAATTTAT 300
Query 301 GCGGAGATGGTCTCTTGTGGTCTTAGAGAAAGTGCTTCCACGTTTCCTTCGGTTCTGAGT 360
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 301 GCGGAGATGGTCTCTTGTGGTCTTAGAGAAAGCGCTTCCACGTTTGCTTCTGTTCTGAGT 360
Query 361 GTATGTAGTGATGAATTGTTCTGTAGAGAAGGGATTCAAGTTCATTGTAGGGTAATTTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GTATGTAGTGATGAATTGTTCTGTAGAGAAGGGATTCAAGTTCATTGTAGGGTGATTTCT 420
Query 421 CTTGGGTTTGGATGTAATATGTTTGTTAGGTCTGCACTTGTGGGTCTTTATGCGT-GTTT 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 421 CTTGGGTTTGGATGTAATATGTTTGTTAGATCTGCACTTGTGGGTCTTTATGCGTCATTT 480
Query 480 GAGGCTTGTTGATGTTGCTTTGAAGTTGTTTGATGAAATGCTTGACAGAAATTTAGCTGT 539
|||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 481 -TGGCTTGTTCATGTTGCTTTGAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGCTGT 539
Query 540 TTGCAATTTGCTGTTGCGATGTTTTTGCCAGACTGGAGAGTCCAAGCGATTGTTTGAAGT 599
|||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |||
Sbjct 540 TTGCAATTTGCTGTTGAAATGTTTTTGCGAGACCGGAGAGTCCAAGCGATTGTTTGGAGT 599
Query 600 GTACCTTAGGATGGAACTTGAAGGTGTAGCAAAAAATGGGTTAACGTATTGTTATATGAT 659
||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| || |
Sbjct 600 GTACCGTAGGATGGAACTTGAAGGTGTAGCTAAAAATGGGTTAACTTATTGTTATTTGCT 659
Query 660 CCGTGGTTGCTCTCATGATCGGTTGGTATATGAAGGGAAGCAATTGCATTCCTTAGTGGT 719
||| ||||| ||| |||||| |||| |||||| ||||||||||||||||||| ||||| |
Sbjct 660 CCGCGGTTGTTCTAATGATCAGTTGTTATATGTAGGGAAGCAATTGCATTCCCTAGTGAT 719
Query 720 TAAATCTGGATGGAACATTTCTAATATATTTGTGGCTAATGTGCTTGTGGACTATTACTC 779
||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 720 TAAATCTGGATGGGACATTTCTAATATATTTGTTGCTAATGCGCTTGTGGACTATTACTC 779
Query 780 TGCTTGTGGTGATTTATCCGGTTCTATGAGATCATTCAATGCTGTCCCAGAAAAGGATGT 839
||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| |||||
Sbjct 780 TGCTTGTGGCGATTTATCCGGTTCTATAAAATCATTCAATGTTGTCCCAGAAAAAGATGT 839
Query 840 AATATCGTGGAACTCGATTGTTTCTGTGTGTGCAGATTACGGATCTGTGCTTGATTCTCT 899
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 840 AATATCGTGGAACTCGATTGTTTCCGTGTGTGCAGATTACGGGTCTGTGCTTGATTCTCT 899
Query 900 CGATTTGTTTAGCAAGATGCAGTTCTGGGGGAAGAGACCTTCTATACGGCCATTCATGTC 959
| ||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 900 TGGTTTGTTTAGCAAGATGCAGTTTTGGGGGAAGAGACCTTCGATACGGTCATTCATGTC 959
Query 960 ATTTCTGAATTTCTGTAGCAGAAACAGTGATATTCAGTCCGGGAAGCAGATCCATTGCTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATTTCTGAATTTCTGTAGCAGAAACAGTGATATTCAGTCCGGGAAGCAGATCCATTGCTA 1019
Query 1020 TGTTCTCAAAATGGGTTTCGATGTTTCAAGTCTTCATGTACAGTCTGCTCTCATTGACAT 1079
||||||||||||||||||||| ||||||||||||| ||| |||||| |||| || |||||
Sbjct 1020 TGTTCTCAAAATGGGTTTCGACGTTTCAAGTCTTCTTGTCCAGTCTTCTCTTATCGACAT 1079
Query 1080 GTATGGGAAATGCAATGGGATTGAGAATTCTGCCTT-GCTTTACCAGAGTTTGCCTTGCC 1138
|||||| |||||||||| |||||||| ||||| ||| || ||||||||||||||||||||
Sbjct 1080 GTATGGCAAATGCAATGAGATTGAGAGTTCTGTCTTGGC-TTACCAGAGTTTGCCTTGCC 1138
Query 1139 TGAATCTGGAGTGTTGTAACTCGCTGATGACTTCTCTGATGCACTGTGGGATCACGAAAG 1198
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1139 TGACTCTGGAGTGCTGTAACTCGCTGATGACTTCTCTGATGCACTGTGGCATCACAAAAG 1198
Query 1199 ATATCATCGAGATGTTTGGTTTGATGATTGATGAAGGAACTGGAATCGACGAAGTTACTC 1258
||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1199 ATATCATTGAGATGTTTGGTTTGATGGTTGATGAAGGAACTGGAATCGACGAAGTCACTC 1258
Query 1259 TTTCTACTGTCCTCAAGGCTTTATCACTCTCTTTACCAGAAAGTTTACATAGCTGCACGC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTCTACTGTCCTCAAGGCTTTATCACTCTCTTTACCAGAAAGTTTACATAGCTGCACGC 1318
Query 1319 TTGTACATTGCTGTGCCATCAAATCTGGTTATGCAGCTGATGTTGCAGTCTCGTGCTCTC 1378
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 TTGTACATTGTTGTGCCATCAAATCTGGTTATGCAGCTGATGTTGCAGTCTCATGCTCTC 1378
Query 1379 TTATTGATGCGTATACAAAGAGTGGTCAGAATGAAGTATCTCGGAAGGTGTTTGATGAGC 1438
| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1379 TAATTGATACGTATTCAAAGAGCGGTCAGAATGAAGTATCTCGGAAGGTGTTTGATGAGC 1438
Query 1439 TTGATACACCTAACATCTTCTGCTTGACTTCGATCATCAATGGCTATGCTAGAAATGGCA 1498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTGATTCACCTAACATCTTCTGCTTGACTTCGATCATCAATGGCTATGCTAGAAATGGCA 1498
Query 1499 TGGGAACAGACTGTGTTAAAATGCTGAGAGAGATGGATCGAATGAATCTCATACCAGACG 1558
|||||| |||||||||| | ||||||||||||||||||| || |||||||||||||||||
Sbjct 1499 TGGGAAGAGACTGTGTTGAGATGCTGAGAGAGATGGATCAAAAGAATCTCATACCAGACG 1558
Query 1559 AAGTTACAATATTGTCTGTACTATCAGGGTGCAGTCATTCTGGGCTTGTTGAAGAAGGCG 1618
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AAGTTACAATATTGTCGGTACTATCAGGGTGCAGTCATTCTGGGCTTGTTGAAGAAGGCG 1618
Query 1619 AGCTGATTTTTGACTCATTGGAATCGAAGTACGGAATTTCGCCAGGAAGGAAACTCTATG 1678
||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1619 AGCTGGTTTTTGACTCATTGGAATTGAAGTACGGAATTTCTCCAGGAAGGAAACTCTATG 1678
Query 1679 CATGCATGGTGGATTTGCTAGGGCGTGCTGGTTTGGTGGAAAAAGCTGAAAGGCTGCTTC 1738
||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1679 CATGCTTGGTGGATTTGCTAGGACGTGCTGGTTTGGTGGAAAAAGCCGAAAGGCTACTTC 1738
Query 1739 TTCAGGCACGA-GGAGATGCAGACTGCGTTGCATGGAGCTCATTACTGCAGAGCTGCAGG 1797
||||||||| | ||||||||||||||| | || ||||||||| |||||||||||||||||
Sbjct 1739 TTCAGGCAC-ATGGAGATGCAGACTGCATCGCGTGGAGCTCACTACTGCAGAGCTGCAGG 1797
Query 1798 ATCCATAGAAACGAAACAATAGGAAGAAGAGCAGCGGAAGTCTTGATGAATCTTGAACCT 1857
|||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1798 ATCCATAGAAACGAAAGAATAGGAAGAAGAGCAGCAGAGGTCTTGATGGATCTTGAACCT 1857
Query 1858 GAGAATTTCGCTGTTTACATTCAGGTTTCAAAATTTTACTTTGAGATCGGTGATTTTGAA 1917
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1858 GAGAATTTCGCTGTTTACATTCAAGTTTCGAAATTTTACTTTGAGATCGGTGATTTTGAA 1917
Query 1918 ATCTCCAGACAAATCAGAGAGATCGCTGCTTCACGAGAGCTCATGAGGGAGATTGGTTAC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1918 ATCTCCAGACAAATCAGAGAGATCGCTGCTTCACGAGAGCTCATGAGGGAGATTGCTT-C 1976
Query 1978 AG 1979
||
Sbjct 1977 AG 1978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75228233875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5