BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23480.1
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921402 jgi|Araly1|921402|scaffold_102683.1 2889 0.0
Ahg489123 jgi|Araly1|489123|fgenesh2_kg.6__2257__AT5G22740.1 359 5e-98
> Ahg921402 jgi|Araly1|921402|scaffold_102683.1
Length=1844
Score = 2889 bits (1564), Expect = 0.0
Identities = 1715/1788 (96%), Gaps = 10/1788 (1%)
Strand=Plus/Plus
Query 95 AGGACACAAACCAAGATCTCGT-GTAGAGGaaaaaaaaCCTTTCCTCCATGTTTAAGTTT 153
||||||||||| |||||||| | ||||| || || |||| ||||||||||||||||||||
Sbjct 65 AGGACACAAACTAAGATCTC-TAGTAGAAGAGAAGAAACATTTCCTCCATGTTTAAGTTT 123
Query 154 TGAGCTTCTGGTTG-GTTTCAAGTCCTGTGGAGAAAAATGTCACCATTTTTGAAGTTCTT 212
|||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 124 TGAGATTCTGG-AGAGTTTCAAGTCCTGTGGAGAAAAATGTCACCATTGATGAAGTTCTT 182
Query 213 TCTCTTTCTCTATGATTATCTTTCACCTTCCTCTTTCTTTCTGGTCCAAAGAAATACCTT 272
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct 183 TCTCTTTCTCTATGATTATCTTTCACCTTCCTCTTGGTTTCTGGTCCAAAGACACAACTT 242
Query 273 AGGAGCATCATTAGATACTACAGATGGGGTTGTGAGAAGTGGCATAATTGGAGAGATTAT 332
|| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 243 AGCAGCATTATCAGATACTACAGATGATGTTGTGAGAAGTGGCATAATTGGAGAGATTAT 302
Query 333 ATACATTTGGAAGCAGACAAGAATCTTTGTCTTTATACCAATCTTGAAATGCTTAGTGAC 392
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 303 ATACATTTGGAAGCAGACAAGAATCTTTGTCTTTATACCAATCTTGAAATGTTTAGTGAC 362
Query 393 AATATGTTTGGTAATGTCCCTTTTGTTGTTCATAGAAAGAGTTTATATGAGCATAGTAGT 452
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 AATATGTTTGGTCATGTCCCTTTTGTTGTTCATAGAAAGAGTTTATATGAGCATAGTTGT 422
Query 453 AGTGTTTGTGAAATTACTTAGACGAACACCTGAGAAAGTACACAAGTGGGAACCTATAAA 512
|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct 423 AGTGTTTGTGAAATTACTTAGAAGAACACCTGAGAAAGTACACAAATGGGAAGCTATAAA 482
Query 513 CGATGATGACCTTGAGCTTGCCAATACAAACTACCCAATGGTTCTCATTCAGATCCCAAT 572
||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 483 CGACGATGATCTTGAGCTGGCCAACACAAACTACCCAATGGTTCTCATTCAGATCCCAAT 542
Query 573 GTACAATGAAAAAGAGGTTTGTCAGTTATCTATAGGAGCAGCCTGTAGACTTTCTTGGCC 632
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 543 GTACAATGAAAAAGAGGTTTGTCAGTTGTCTATAGGAGCAGCATGTAGACTTTCTTGGCC 602
Query 633 ATTGGATCGAATGATAGTTCAAGTACTTGATGATTCCACAGATCCAGCTAGTAAGGAATT 692
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 603 ATTGGATCGAATGATAATTCAAGTTCTTGATGATTCCACAGATCCAGCTAGTAAGGAATT 662
Query 693 GGTGAATGCGGAATGTGATAAATGGGCGAGGAAAGGTATAAACATAATGTCAGAGATTAG 752
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 663 GGTGAATGCGGAATGCGATAAATGGGCGAGAAAAGGTATAAACATAATGTCAGAGATTCG 722
Query 753 AGACAACAGAATTGGATACAAAGCAGGAGCATTAAAGGCAGGAATGATGCACAACTATGT 812
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGACAACAGAATCGGATACAAAGCAGGAGCATTAAAGGCAGGAATGATGCACAACTATGT 782
Query 813 GAAACAATGCGAATTCGTCGCCATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCT 872
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAAACAATGCGAGTTTGTCGCCATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCT 842
Query 873 TGAACGAACCATTCCTTTTCTTATTCACAACCATGAAATCTCTCTTGTTCAATGCCGTTG 932
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 843 TGAACGAACCATTCCTTTTCTTATTCACAACCATGAAATCTCTCTGGTCCAATGCCGTTG 902
Query 933 GAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTA 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTA 962
Query 993 CCATTTTGTGGCTGAGCAAGAATCTGGATCTTCAATACATGCTTTCTTTGGATTCAATGG 1052
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 963 CCATTTTGTGGCTGAGCAAGAATCTGGATCGTCAATCCATGCTTTCTTTGGATTCAATGG 1022
Query 1053 AACCGCGGGTGTATGGAGAATCGCAGCTTTAAACGAAGCTGGAGGATGGAAAGATCGAAC 1112
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1023 AACCGCGGGTGTTTGGAGAATCGCAGCTTTAAACGAAGCTGGGGGATGGAAAGATCGAAC 1082
Query 1113 AACCGTAGAAGATATGGATTTAGCAGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTA 1172
||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1083 AACTGTAGAAGACATGGATTTAGCTGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTA 1142
Query 1173 TGTCCATGACGTCGAGGTGAAAAATGAATTGCCAAGTACATTCAAAGCATACAGGTTTCA 1232
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1143 TGTCCATGACGTCGAGGTGAAAAATGAATTGCCAAGTACATTCAAAGCATACCGGTTTCA 1202
Query 1233 GCAACATAGATGGTCTTGTGGACCAGCTAATCTATGGAGGAAGATGACAATGGAAATCTT 1292
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1203 GCAACATAGATGGTCTTGTGGACCAGCGAATCTATGGAGGAAGATGACAATGGAAATCTT 1262
Query 1293 ACAGAACAAGAAAGTGTCGGCCTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCAT 1352
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1263 ACAGAACAAGAAAGTGTCGGCGTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCAT 1322
Query 1353 AAGGAAGATTGTAGTACACATCTTCACATTTGTCTTCTACTGTCTGATATTACCAACAAC 1412
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1323 AAGGAAGATTGTAGTACACATCTTCACATTTGTCTTCTACTGTCTGATTTTACCAGCAAC 1382
Query 1413 TGTGCTATTCCCTGAGCTCCAAGTTCCTAAATGGGCAACTGTTTATTTTCCTACTACAAT 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TGTGCTATTCCCTGAGCTCCAAGTTCCTAAATGGGCAACTGTTTATTTTCCTACTACAAT 1442
Query 1473 CACTATCCTTAACGCAATCGCTACACCTCGATCACTCCATCTTCTTGTCTTTTGGATCTT 1532
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1443 CACTATCCTTAACGCAATCGCAACACCTCGATCACTCCATCTTCTTGTCTTTTGGATCTT 1502
Query 1533 ATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACATTCATCGGGTTACTAGAGGC 1592
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1503 ATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACTTTCATCGGTTTACTAGAGGC 1562
Query 1593 AGGACGGGTTAACGAATGGGTTGTTACTGAAAAATTAGGTGACACTCTCAAGTCTAAGTT 1652
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1563 AGGACGGGTTAACGAATGGGTTGTTACTGAAAAATTAGGTGACACCCTCAAGTCTAAGTT 1622
Query 1653 AATAGGTAAAGCTACAACTAAGCTTTATACCAGATTTGGACAAAGACTCAACTGGAGAGA 1712
||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1623 AATAG------CTACAACTAAGCTTTATACAAGATTTGGACAAAGAATCAACTGGAGAGA 1676
Query 1713 ACTCGTTGTTGGATTATATATATTCTTCTGCGGATGTTACGATTTCGCATATGGAGGATC 1772
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1677 ACTCGTTGTTGGATTATATATATTCTTCTGCGGATGCTACGATTTCGCATATGGAGGATC 1736
Query 1773 ATACTTTTATGTTTATCTGTTTTTACAGTCTTGTGCATTTTTTGTTGCTGGAGTTGGTTA 1832
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1737 ATACTTCTATGTTTATCTGTTTTTACAGTCTTGTGCATTTTTTGTTGCCGGAGTTGGTTA 1796
Query 1833 TATTGGCACATTTGTTCCAACTGTTTAGATTAGACTTTTGTATTTGAG 1880
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1797 TATTGGCACATTTGTTCCAACTGTTTAGACTAGACTTTTGTATTTGAG 1844
> Ahg489123 jgi|Araly1|489123|fgenesh2_kg.6__2257__AT5G22740.1
Length=2254
Score = 359 bits (194), Expect = 5e-98
Identities = 822/1116 (74%), Gaps = 80/1116 (7%)
Strand=Plus/Plus
Query 546 CCCAATGGTTCTCATTCAGATCCCAATGTACAATGAAAAAGAGGTTTGTCAGTTATCTAT 605
|||| | || ||| | || ||||| |||| ||| ||| |||||||| | || |||| ||
Sbjct 469 CCCAGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGGTTTATAAGCTATCAAT 528
Query 606 AGGAGCAGCCTGTAGACTTTCTTGGCCATTGGATCGAAT-GATAG-TTCAAGTACTT-GA 662
|||||| || ||| |||| |||||||| | ||||| | | | | ||||||| || ||
Sbjct 529 AGGAGCGGCGTGTGGACTCTCTTGGCCGTCCGATCGTCTCG-T-GATTCAAGT-GTTAGA 585
Query 663 TGATTCCACAGATCC-AGCTAG-TAAGGAATTGGT-G-AATGCGGAATGTGATAA-ATGG 717
||| || |||||||| | || | |||| || |||| | ||| ||| || | || ||||
Sbjct 586 TGACTCAACAGATCCTA-CT-GTTAAGCAAATGGTGGAAAT--GGAGTGCCA-AAGATGG 640
Query 718 GCGAGGAAAGGTATAAACA-TA-ATGTCAGAGATTAGAGACAACAGAATTGGATACAAAG 775
|| || ||||| || || | || | ||| | || ||||| || ||| |||| |||||||
Sbjct 641 GCAAGTAAAGGAATCAATATTAGGTATCA-A-ATAAGAGAAAATAGAGTTGGTTACAAAG 698
Query 776 CAGGAGCATTAAAGGCAGGAATGATGCACAACTATGTGAAACAATGCGAAT-TCGTCGCC 834
| || || ||||||| |||| | | | | ||||| ||||| ||||| | | || | |
Sbjct 699 CCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAACATTGCGAGTAT-GTTGTC 757
Query 835 ATTTTCGATGCTGATTTTCAGCCTGATCCTGACTTTCTT-GAACGAACCATTCCTTTTCT 893
|| ||||| || ||||||||||| || || || |||||| | || | ||||||||||||
Sbjct 758 ATCTTCGACGCCGATTTTCAGCCGGAACCGGATTTTCTTCG-CCGTAGCATTCCTTTTCT 816
Query 894 TATTCACAA--CCATGAAATCT-CTCTT-GTTCAATG-CCGTTGGAAGTTTGTGAATGCA 948
|| ||||| ||| | || | | ||| |||| | | ||| ||| ||| || ||| |
Sbjct 817 CATGCACAATCCCA--ACAT-TGC-CTTGGTTC-AGGCCCGATGGCGGTTCGTAAATTCT 871
Query 949 AACGAGTGCTTAATGACAAGAATGCAAGAGATGTCACTAAACTACCATTT-TGTGGCTGA 1007
| ||||||||| ||||||| |||||||| ||||| | | |||||||| | | |||
Sbjct 872 GATGAGTGCTTATTGACAAGGATGCAAGAAATGTCGTTGGATTACCATTTCACT-GTTGA 930
Query 1008 GCAAGAA-TCTGGATCTTCAATACATGCTTTCTTT-GGATTCAATGGAACCGCGGGTGTA 1065
||||||| || || || || | ||||||||| ||| || ||||| |||||||| || |
Sbjct 931 GCAAGAAGTC-GGTTCATCGACACATGCTTT-TTTCGGCTTCAACGGAACCGCCGGAATC 988
Query 1066 TGGAGAATCGCAGCTTTAAACGAAGCTGGAGGATGGAAAGATCGAACAACCGTAGAAGAT 1125
|||||||| || || |||| ||||| || || ||||||||| | || ||||| ||||||
Sbjct 989 TGGAGAATAGCGGCGATAAATGAAGCCGGCGGGTGGAAAGATAGGACCACCGTGGAAGAT 1048
Query 1126 ATGGATTTAGCAGTAAGAGCTTGTCTTCATGGTTGGAAATTTGTCTATGTCCATGA-CGT 1184
|||||| | || || ||||| |||||| || ||||||||| |||| || ||| | |
Sbjct 1049 ATGGATCTCGCCGTCCGAGCTAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTT 1108
Query 1185 CGAGGTGAAAAATGAA-TTGCCAAGTACATTCAAAGCATACAGGTTTCAGCAACATAGAT 1243
| ||||||||| |||| || |||||||| || | ||| | | | ||||||||||||||||
Sbjct 1109 C-AGGTGAAAAGTGAACTT-CCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGAT 1166
Query 1244 GGTCTTGTGGACCAGCTAATCTATGGAGGAAGATGACAATGGAAATCTTACAGAA-CAAG 1302
||||||||||||| || ||||| | ||||| ||| ||||| ||| || |||| ||||
Sbjct 1167 GGTCTTGTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCATA-AGAAACAAG 1225
Query 1303 AAAGTGTCGGC-CTGGAAGAAATTGTATCTCATATACAATTTCTTCTTCATAAGGAAGAT 1361
|||||| | |||||||||| ||||| | || |||| |||||||| | ||||| ||
Sbjct 1226 AAAGTGA-GATTCTGGAAGAAAGTGTATGTGATCTACAGCTTCTTCTTTGTGAGGAAAAT 1284
Query 1362 TGTAGTACACATCT---TCACATTT-GTCTTCTACTGTC-T-GATATTACCAACA-ACTG 1414
| | ||||| | |||||||| || |||||||| | | | | || || | ||
Sbjct 1285 CATTG--CACAT-TGGGTCACATTTTGT-TTCTACTG-CGTTGTTCTT-CCT-CTTACCA 1337
Query 1415 TGCTATTCCCTGA-GCTCCAAGTTCCTAAATGGG-CAACTGTTTATTTTCCTACTA-CAA 1471
| || |||| || | | ||||||| | |||| | | |||||| | ||| | | ||
Sbjct 1338 TCCTCGTCCCCGAAGTTA-AAGTTCCGATTTGGGGCTCC-GTTTATATCCCTTCCATCA- 1394
Query 1472 TCACTATCCTTAACGCAATCGCTACACCTCGATC-ACTCCATCTTCTTGT-CTTTTGGAT 1529
|||||||||| ||| | ||| ||| || | || | || |||| || || || ||||||
Sbjct 1395 TCACTATCCTCAACTCCGTCGGTACTCCAAGGTCGATTC-ATCTGCT-GTTCTATTGGAT 1452
Query 1530 -CTTATTCGAGAATGTAATGTCGATGCATCGCACAAAAGCGACAT-TCATCGGGT-TACT 1586
|| ||| |||||||| |||||| |||| || ||||| || || | |||| || | | ||
Sbjct 1453 TCT-ATTTGAGAATGTGATGTCGCTGCACCGGACAAAGGCCAC-TCTCATTGG-TCT-CT 1508
Query 1587 A-GAGGCAGGACGGGTTAACGAATGGGTTGTTACTG 1621
||||| ||| ||| |||||||||||| || ||||
Sbjct 1509 TTGAGGCTGGAAGGGCTAACGAATGGGTCGTGACTG 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75761497305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5