BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23490.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1 1498 0.0
Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1 693 0.0
Ahg919852 jgi|Araly1|919852|scaffold_101133.1 558 2e-158
Ahg925013 jgi|Araly1|925013|scaffold_200574.1 141 9e-33
> Ahg472612 jgi|Araly1|472612|fgenesh2_kg.1__2566__AT1G23490.1
Length=931
Score = 1498 bits (811), Expect = 0.0
Identities = 896/936 (96%), Gaps = 10/936 (1%)
Strand=Plus/Plus
Query 51 tctctttcaaattctgttcgtctctcgcgatctctctctctctctcAGATAGCTCCGAAA 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTTTCAAATTCTGTTCGTCTCTCGCGATCTCTCTCTCTCTCTCAGATAGCTCCGAAA 60
Query 111 CTTTCACGCAGAGTTAAGTGAAGCAGGATGGGATTGTCATTCGCCAAGCTTTTTAGCAGG 170
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 61 CTTTCACGTAGAGGTAAGTGAAGCAGGATGGGTTTGTCATTCGCCAAGCTTTTTAGCCGG 120
Query 171 CTTTTTGCCAAGAAGGAGATGAGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACC 230
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CTTTTTGCCAAGAGGGAGATGCGAATTCTCATGGTTGGTCTTGATGCTGCTGGTAAGACC 180
Query 231 ACCATTTTGTACAAGCTCAAGCTCGGAGAGATTGTAACCACCATTCCCACTATTGGGTTC 290
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACCATTTTGTACAAGCTCAAGCTCGGAGAGATTGTAACCACCATTCCTACTATTGGGTTC 240
Query 291 AATGTGGAGACTGTGGAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGCGGTCAG 350
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AATGTGGAAACTGTGGAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGGGGTCAG 300
Query 351 GATAAGATCCGTCCCTTGTGGAGGCATTACTTCCAGAACACCCAAGGTCTTATCTTTGTG 410
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 301 GACAAGATCCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAAGGTCTTATCTTTGTG 360
Query 411 GTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGTTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGCTG 420
Query 471 AATGAGGACGAGCTGCGTGATGCTGTTCTGCTCGTATTTGCTAACAAGCAGGATCTCCCA 530
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 AATGAGGATGAGCTGCGTGATGCTGTTCTGCTCGTGTTTGCTAACAAGCAGGATCTCCCA 480
Query 531 AATGCTATGAATGCAGCTGAGATCACGGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGT 590
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AATGCTATGAATGCAGCTGAAATCACTGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGT 540
Query 591 CACTGGTACATCCAGAGCACATGTGCCACTTCAGGCGAGGGGCTTTACGAAGGTCTTGAC 650
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CACTGGTACATCCAGAGCACATGTGCCACTTCAGGTGAGGGGCTTTACGAAGGTCTTGAC 600
Query 651 TGGTTGTCCAACAACATTGCCGGCAAGGCGTAGAGGGAAAGTTCGTGGTGGAGTTGATTT 710
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 601 TGGTTGTCCAACAACATTGCCGGCAAGGCGTAGATGGAAAGTTCGTGGCCGAGTTGATTT 660
Query 711 GCTGAGCAAATCTGGATGCAGGGGCAAACATTATCTGAAtttttttt-ttggtttccg-t 768
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 661 GCTGAGCAAATCTGGATGCAGGGGCAAACATTATCTGAATTTTTTTTGTTGGTTTCCGCT 720
Query 769 tttcgttattgttctgcttttttttttGGGATATGTCGATGGATTTTGTGATTGTACGTA 828
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 721 TTT-GTTATTGTTCTGCTTTTTTTTTTGGGATATGTGGATGGATTTTGTGATTGTACGTA 779
Query 829 GAACTTAGaaaaaaaCTACCTTTTATATAGTTTTGGTAAAACTGTAATCGAAGATTTCAC 888
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 GAACTTAGAAAAA--CTACCTTTTATATAGTTTTGGTAAAACTGTAATCGAAGATTA-AT 836
Query 889 CTACTGCTTTCGTGGTTTT-GGTCACATTTTACTTGTGCACTTTGATTCATATGTTGGAA 947
||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||||
Sbjct 837 CTACTGCTTTCGTGGTTTTTGG-CACATTTTACTTTTGCACTTTAATGCATATGTTGGAA 895
Query 948 TGCGGTTTCGTTGGCAC-C-TGCTACACGAAACTTG 981
|||||||||||| ||| | ||||||||||||||||
Sbjct 896 TGCGGTTTCGTTTACACACCTGCTACACGAAACTTG 931
> Ahg476172 jgi|Araly1|476172|fgenesh2_kg.2__1302__AT1G70490.1
Length=900
Score = 693 bits (375), Expect = 0.0
Identities = 495/554 (89%), Gaps = 4/554 (1%)
Strand=Plus/Plus
Query 127 AGTGAAGCAGGATGGGATTGTCATTCGCCAAGCTTTTTAGCAGGCTTTTTGCCAAGAAGG 186
||||||| | ||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 102 AGTGAAGAAAAATGGGGTTGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGG 161
Query 187 AGATGAGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGC 246
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 162 AGATGCGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATTTTGTACAAGC 221
Query 247 TCAAGCTCGGAGAGATTGTAACCACCATTCCC-ACTATTGGGTTCAATGTGGAGACTGTG 305
||||||||||||||||||| |||||||| ||| |||||||| ||||||||||| ||||||
Sbjct 222 TCAAGCTCGGAGAGATTGTCACCACCAT-CCCTACTATTGGTTTCAATGTGGAAACTGTG 280
Query 306 GAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGCGGTCAGGATAAGATCCGTCCC 365
|| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 281 GAATACAAGAACATCAGTTTCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCC 340
Query 366 TTGTGGAGGCATTACTTCCAGAACACCCAAGGTCTTATCTTTGTGGTGGACAGCAATGAC 425
|||||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |||
Sbjct 341 TTGTGGAGACACTACTTCCAGAACACTCAGGGTCTTATCTTTGTCGTGGATAGCAACGAC 400
Query 426 AGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGTTGAATGAGGACGAGCTG 485
|||||| | |||||||||||||||||||| | ||| | ||| |||||||||||||||||
Sbjct 401 AGAGACAGAGTTGTTGAGGCTAGAGATGAGCTCCACAGGATGCTGAATGAGGACGAGCTG 460
Query 486 CGTGATGCTGT-TCTGCTCGTATTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGC 544
||||||||||| | |||| || ||||| |||||||| ||||| |||||||| ||||| ||
Sbjct 461 CGTGATGCTGTGT-TGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCGATGAACGC 519
Query 545 AGCTGAGATCACGGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCA 604
||||| ||||| ||||||||||| || || || |||||||||||||| |||||||||||
Sbjct 520 CGCTGAAATCACAGATAAGCTTGGCCTTCATTCCCTCCGTCAGCGTCATTGGTACATCCA 579
Query 605 GAGCACATGTGCCACTTCAGGCGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAA 664
||||||||||||||| ||||| || |||||||| |||||||| |||||| | ||||||||
Sbjct 580 GAGCACATGTGCCACATCAGGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAA 639
Query 665 CATTGCCGGCAAGG 678
||| ||||||||||
Sbjct 640 CATCGCCGGCAAGG 653
> Ahg919852 jgi|Araly1|919852|scaffold_101133.1
Length=586
Score = 558 bits (302), Expect = 2e-158
Identities = 460/536 (86%), Gaps = 11/536 (2%)
Strand=Plus/Plus
Query 140 GGGATTGTCATTCGCCAAGCTTTTTAGCAGGCTTTTTGCCAAGAAGGAGATGAGAATTCT 199
||| || ||||| || |||||||| ||| ||||||| ||||||||||||||| |||| ||
Sbjct 24 GGGCTT-TCATTTGCAAAGCTTTTCAGCCGGCTTTTCGCCAAGAAGGAGATGCGAATCCT 82
Query 200 GATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGA 259
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 83 TATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGA 142
Query 260 GATTGTAACCACCATTCCCACTATTGGGTTCAATGTGGAGACTGTGGAGTACAAGAACAT 319
|||||| ||||||||||| || |||||||| ||||||||||| || |||||||| |||||
Sbjct 143 GATTGTTACCACCATTCCTACCATTGGGTTTAATGTGGAGACGGTTGAGTACAAAAACAT 202
Query 320 CAGTTTCACAGTGTGGGATGTCGGCGGTCAGGATAAGATCCGTCCCTTGTGGAGGCATTA 379
||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 203 CAGCTTCACCGTCTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGCACTA 262
Query 380 CTTCCAGAACACCCAAGGTCTTATCTTT-GTGGTGGACAGCAATGACAGAGACCGTGTTG 438
|||||| ||||| |||||||| || ||| ||||| || ||||||||||||||||||||||
Sbjct 263 CTTCCAAAACACACAAGGTCTGAT-TTTCGTGGTTGATAGCAATGACAGAGACCGTGTTG 321
Query 439 TTGAGGCTAGAGATGAA-TTGCACCGAATGTTGAATGAGGACGAGCTGCGTGATGCTGT- 496
|||| || ||||||||| || ||| | ||||||||||| || ||||| || ||||| ||
Sbjct 322 TTGAAGCCAGAGATGAACTT-CACAGGATGTTGAATGAAGATGAGCTACGGGATGCAGTA 380
Query 497 TCTGCTCGTATTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAGATCAC 556
| |||| || ||||| |||||||| ||||| |||||||| |||||||| |||||||| ||
Sbjct 381 T-TGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCTGAGATAAC 439
Query 557 GGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGC 616
||||||||||| || ||||| ||||| || || ||||||||||| || |||||||| ||
Sbjct 440 TGATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATACAAAGCACATGCGC 499
Query 617 CACTT-CAGGCGAGGGGCTTTACGAAGGTCTTGACTGG-TTGTCCAACAACATTGC 670
||| | || || ||||| || |||||||| || ||| || ||||||||||||||
Sbjct 500 AACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT-TCCAACAACATTGC 553
> Ahg925013 jgi|Araly1|925013|scaffold_200574.1
Length=436
Score = 141 bits (76), Expect = 9e-33
Identities = 110/125 (88%), Gaps = 8/125 (6%)
Strand=Plus/Plus
Query 169 GGCTTTTTGCCAAGAAGGAGATGAG-A--ATTCT-GATGGTTGGTCTTGATGCTGCTGGT 224
||||||||||||||||||||||| | | || | | |||||||||||||||||||||||
Sbjct 24 GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT 83
Query 225 AAGACCACCATTTTGTACAAGCTCAAGCTCGG--AGA--GATTGTAACCACCATTCCCAC 280
|||||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||
Sbjct 84 AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC 143
Query 281 TATTG 285
||||
Sbjct 144 CATTG 148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5