BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23510.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472613 jgi|Araly1|472613|fgenesh2_kg.1__2567__AT1G23510.1 773 0.0
Ahg472615 jgi|Araly1|472615|fgenesh2_kg.1__2569__AT1G23520.1 488 3e-137
Ahg921415 jgi|Araly1|921415|scaffold_102696.1 139 3e-32
> Ahg472613 jgi|Araly1|472613|fgenesh2_kg.1__2567__AT1G23510.1
Length=755
Score = 773 bits (418), Expect = 0.0
Identities = 483/513 (94%), Gaps = 9/513 (2%)
Strand=Plus/Plus
Query 151 ATGGGTGTATTTCCTGGATTTGGTAGCTGGATCAATCAAAACACTCAACAGCTTCC-TC- 208
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGGCGTATTTCCTGGATTTGGTAGCTGGATCAATCAAAACACTCAACAGCTTCCATCA 60
Query 209 A-CAAGGCAGAGTCCGAGAGATCTGAGAATGCGAAATTTAAGTCAAAGTCAGAGACAAAC 267
| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 61 ATTAAGGCAGAGTCCGAGAGATATGAGAATGTGAAATTTAAGTCAAAGTCGGAGACAAAT 120
Query 268 ACTCATGAGGCGAGAGATGAAATGAAACAGCAATTAAAACTTTGGAGAGATACAGAGAAG 327
|||||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||| ||
Sbjct 121 ACTCATGAGGAGAGAGATGAGATGAAACATCAATTAAAACTTTGGAGAGATGCAGAGCAG 180
Query 328 AAGGAACAATGGAATGATG-CTCCTCCTAATGTGAAGGTGGAAAGAAGAAATGATCTAGA 386
||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||
Sbjct 181 AAGGAACAATGGAATGATGAC-CCACCTAAGGTGAAGGTGGAAAGAAGAAATGATCTAGA 239
Query 387 ATGGGGTATGTCAACTATAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGGGTATGTCAACTATAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTA 299
Query 447 CAACGTTTTAACTAATCCAGACAACCAACCATACTTCA-GAATCATCAAAGGACGCCAAC 505
| ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 300 CGACGTTTTAACTAATCCAGACAACCAACCATACT-CAAGAATAATCAAAGGACGCCAAC 358
Query 506 TTTTGGAAAACATATCAAGAAAAGTTGTGTCGCCGGATACCGGGAAAGGGCAGCTTGTGG 565
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 359 TTTTGGAAAACATATCAAGAAAAGTTGTGTCCCCGGATACCGGGAAAGGGCAGCTTGTGG 418
Query 566 ACACCA-AGAAAGCTGTGGCCTGGAACTTCCTTTGGTTATCTGGAACTATCCCGATAATT 624
|||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 419 ACAC-AGAGAAAGCTGTGGCCTGGAACTTCCTTTGGTTGTCTGGAACCATCCCGATAATT 477
Query 625 GCAAATTTTATCGAACACCGACAAGTCCTTACC 657
||||||||||||||| | |||||| ||||||||
Sbjct 478 GCAAATTTTATCGAAAATCGACAATTCCTTACC 510
Score = 387 bits (209), Expect = 1e-106
Identities = 231/242 (95%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 720 CTATACGTAGATTCAGAACGCTTGTGCAAACAAAAGAAGCCGAAGAGTACAGAAGAATAC 779
||||||||||||||||||| ||| |||||||| ||||||| | ||||||||||||||||
Sbjct 514 CTATACGTAGATTCAGAACTCTTTTGCAAACACGAGAAGCCTAGGAGTACAGAAGAATAC 573
Query 780 GAAAGATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGATGTTT 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 GAAAAATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGATGTTT 633
Query 840 AAGCCTTCTTTTATTTTTAATCTGCCACCGATTTCTTGGTACGTTCGTCGGATAACCATC 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 634 AAGCCTTCTTTTCTTTTTAATCTGCCACCGATTTCTTGGTACGTTCGTCGGATCACCATC 693
Query 900 AAGACCATGAAAACTCTGATCGAAGATCTTCAAATTACAAGTGCCATGATCCGAGGTATT 959
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 694 AAGACCATGAAAACTCTGATCGAAGATCTTCAAATTACAAGTGCCGTGATGCGAGGTATT 753
Query 960 TG 961
||
Sbjct 754 TG 755
> Ahg472615 jgi|Araly1|472615|fgenesh2_kg.1__2569__AT1G23520.1
Length=1057
Score = 488 bits (264), Expect = 3e-137
Identities = 681/870 (78%), Gaps = 77/870 (9%)
Strand=Plus/Plus
Query 103 TCTTTGGATCGTCATTTTCTCTTTGTGGACTAAAGTTTAAGAGAGAACATGGGTGTATTT 162
||||| |||||||||||||||| ||| ||||||| |||||||| | | |||||| ||||
Sbjct 66 TCTTTAGATCGTCATTTTCTCTCTGTCGACTAAATTTTAAGAGTGGA-ATGGGTATATTG 124
Query 163 CCTGGATTTGGTAGCTGGATCAATCAAAACACTCAACAGCTTCCTCACAAGGCAGAGTCC 222
|||||||||| | ||| |||||| || |||||||||||||||||| ||||| |||||
Sbjct 125 CCTGGATTTGATGGCTTGATCAACCAGAACACTCAACAGCTTCCT---AAGGCTGAGTCT 181
Query 223 GAGAGATCTGAGAATGCGAAATTTAAGTCAAAGTCAGAGACAAACACTCATGAGGCGAGA 282
||||||||||||||| ||||| |||||||| |||||||| || ||||| |||| ||||
Sbjct 182 AAGAGATCTGAGAATGTGAAATCTAAGTCAAGGTCAGAGATAAGTACTCACGAGGAGAGA 241
Query 283 GATGAAATGAAACAGCAATTAAAACTTTGGAGAGATACAGAGAAGAAGGAACAATGG-AA 341
||||| ||||| | |||||||||||||||||| || |||||||||| ||||||||| ||
Sbjct 242 GATGAGATGAAGGAACAATTAAAACTTTGGAGACATGCAGAGAAGAAAGAACAATGGCAA 301
Query 342 TGATGCT-CCTCCTAATGTGAAGGTGGAAAGAAGAAATGATCTAGAATGGGGTATGTCAA 400
|||| | ||| |||| |||||||| | ||| | | || | ||||| | |||| |
Sbjct 302 -GATG-TCCCTGCTAAAGTGAAGGT-G---GAA-ACA-GA---A-AATGGTCTTTGTC-A 348
Query 401 CTATAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTACAACGTTTTAACTA 460
| | || ||| |||||||||||||||||||||||||||||| ||| |||| || ||||
Sbjct 349 -TGTGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCTACGACGTGTTGACTA 407
Query 461 ATCCAGACAACCAACCATACTTCA-GAATCATCAAAGGAC-GCCA--A-CTTTTGGAAAA 515
|||| |||||||||||||||| || |||| ||||| || |||| | ||| |||| ||
Sbjct 408 ATCCCGACAACCAACCATACT-CACGAATAATCAACC-ACCGCCACGAACTTCTGGATAA 465
Query 516 CATATCAAGAAAAGTTGTGTCGCCGGAT-ACCGGGAAAGGG-CAG-CTTGTGGACACCAA 572
| ||||||||||||| || | | ||||| | || | | | ||| | ||||| | |
Sbjct 466 CGTATCAAGAAAAGT-GT-T-GACGGATGAT-GG-ATCGAGTCAGACG-GTGGAGGCGGA 519
Query 573 GAAAGCTGTGGCCTGGAACTTCCTTTGGTTATCTGGAACTATCCCGATAA-T-TGCAAAT 630
|||||||||||||||||| || |||| || ||||||||||||||||||| | | | | |
Sbjct 520 GAAAGCTGTGGCCTGGAAGTTTCTTTCGTGGTCTGGAACTATCCCGATAAGTCT-CGA-T 577
Query 631 TTTATCGAACACCG-ACAAGTCCTTACCGTACAATATACGGTAAAG-AATAA-GATGTTC 687
|| ||||| |||| | || || || | | | ||||| | |||| || || |||||||
Sbjct 578 TTCGTCGAAAACCGTAAAAATCTTT-CTGCAGTATATATGA-AAAGGAA-AATGATGTTC 634
Query 688 AT-AAA-CATGTTTGTCAGTA-T---AAAGTGGAGCCGCTATACGTAGATTCAGAACGCT 741
|| ||| | | |||| ||| | ||||||||||| ||||||| |||||||| ||||
Sbjct 635 ATGAAAAC-T-TTTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTGGATTCAGAGCGCT 692
Query 742 TGTGCAAA--CA---A-------A--A-GAAGCCGAAGAGTAC-AGAAGAATAC-GAAAG 784
||||||| || | | | ||||||||| ||| | |||||||||| | ||
Sbjct 693 TGTGCAAGGGCATTGATTGCTCGAGCATGAAGCCGAAAAGT-CGAGAAGAATACCGTAA- 750
Query 785 ATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGATGTTTAAGCC 844
|||||| | |||||||||| ||||| |||||| |||||| || |||||| ||| ||||
Sbjct 751 ATGTAGTGGTGGACAAGGAAAGATTGCGTCGAAGGTGACAATGAACCAGACCTTTCAGCC 810
Query 845 TTCTTTTATTTTTAATCTGCCACCGATTTCTTGGTACGTTCGTCG-GATAACCATCAAGA 903
||||||| |||||||||||||||| ||||||||||| | ||| | ||| ||||||||||
Sbjct 811 TTCTTTTCCTTTTAATCTGCCACCGCTTTCTTGGTACATCCGT-GAGATCACCATCAAGA 869
Query 904 CCA-TGAAAACTCTGATCGAAGATCTTCAA 932
|| | || ||||||| ||||||||||||
Sbjct 870 TCACT-AAGGCTCTGATAGAAGATCTTCAA 898
> Ahg921415 jgi|Araly1|921415|scaffold_102696.1
Length=1048
Score = 139 bits (75), Expect = 3e-32
Identities = 168/212 (79%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 720 CTATACGTAGATTCAGAACGCTTGTGCAAACAAAA-GAAGCCGAAGAGTACAGAAGAATA 778
||||||||||||||||||||||||||||| || | || |||||||| | | ||||||||
Sbjct 453 CTATACGTAGATTCAGAACGCTTGTGCAAGCACATTGA-GCCGAAGAATCCGGAAGAATA 511
Query 779 CGAAAGATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGA-TGT 837
| ||||||||||| | ||||| |||||||||| ||||| ||| || |||| | | | |
Sbjct 512 CAAAAGATGTAGCGGTGGACAGGGAAGGATTGCATCGAAGGTGGCAATGGAG-ATAATCT 570
Query 838 TTAAGCCTTCTTTTATTTTTAATCTGCCACCGATTTCTTG-GT-ACGTTCGTCGGATAAC 895
|| ||||||||| | || ||||| |||||||| |||||| || || ||| |||| ||
Sbjct 571 TTCAGCCTTCTTCTCTTCTTAATGTGCCACCGGTTTCTTTTGTTACC--CGTTGGATTAC 628
Query 896 CATCAA-GACCATGAAAACTCTGATCGAAGAT 926
|||||| | ||| || | | || ||||||||
Sbjct 629 CATCAAAG-CCACCAAGATTTTGCTCGAAGAT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5