BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23520.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472615 jgi|Araly1|472615|fgenesh2_kg.1__2569__AT1G23520.1 1249 0.0
Ahg472613 jgi|Araly1|472613|fgenesh2_kg.1__2567__AT1G23510.1 239 4e-62
Ahg921413 jgi|Araly1|921413|scaffold_102694.1 231 6e-60
> Ahg472615 jgi|Araly1|472615|fgenesh2_kg.1__2569__AT1G23520.1
Length=1057
Score = 1249 bits (676), Expect = 0.0
Identities = 929/1040 (89%), Gaps = 61/1040 (6%)
Strand=Plus/Plus
Query 95 tatcatcttt-ctctcgga-c--actctctttggatcgtcattttctctctATCGACTAA 150
|||| ||||| | |||||| | ||||||||| |||||||||||||||||| ||||||||
Sbjct 41 TATC-TCTTTGC-CTCGGACCAGACTCTCTTTAGATCGTCATTTTCTCTCTGTCGACTAA 98
Query 151 ATTTTAAGAGTGGAATGGGTATATTTCCTGGATTTGGTGGCTTGATCAACCATAACACTC 210
||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||
Sbjct 99 ATTTTAAGAGTGGAATGGGTATATTGCCTGGATTTGATGGCTTGATCAACCAGAACACTC 158
Query 211 AAGAG---CCT----C-----CTAAG-G--CTGAGAATGTGAAATCTAAGTCAAGGTCAG 255
|| || ||| | ||||| | ||||||||||||||||||||||||||||||
Sbjct 159 AACAGCTTCCTAAGGCTGAGTCTAAGAGATCTGAGAATGTGAAATCTAAGTCAAGGTCAG 218
Query 256 AAATAAAAAATACTGATCACGAAGAGAGAAATGAGATGAAGGAGCAACTAAAACTTTGGA 315
| || || ||| |||||| |||||| ||||||||||||| ||| ||||||||||||
Sbjct 219 AGAT---AAGTAC---TCACGAGGAGAGAGATGAGATGAAGGAACAATTAAAACTTTGGA 272
Query 316 GACATGCAGAGAAGAAAGAACAATGGGAAGATGTCCCTGCTAAGGTGAAGGTGGAAACAG 375
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 273 GACATGCAGAGAAGAAAGAACAATGGCAAGATGTCCCTGCTAAAGTGAAGGTGGAAACAG 332
Query 376 AAGATGGTCTTTGCCATGTGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCT 435
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 AAAATGGTCTTTGTCATGTGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCT 392
Query 436 ACGACGTTTTGACTAATCCCGACAACCAATCATACTCAAGAATAATTAACCAACGCCACG 495
||||||| ||||||||||||||||||||| |||||||| ||||||| ||||| |||||||
Sbjct 393 ACGACGTGTTGACTAATCCCGACAACCAACCATACTCACGAATAATCAACCACCGCCACG 452
Query 496 AACTTCTGGATAACGTATCAAGAAATGTGTTGACGGATAATGGATCGAGCCAGACGGTGG 555
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 453 AACTTCTGGATAACGTATCAAGAAAAGTGTTGACGGATGATGGATCGAGTCAGACGGTGG 512
Query 556 AGGCAGAGAAAGCTGTGGCCTGGAAGTTTCTTTCATGGTCGGGAACTATCCCGATAAGTC 615
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 513 AGGCGGAGAAAGCTGTGGCCTGGAAGTTTCTTTCGTGGTCTGGAACTATCCCGATAAGTC 572
Query 616 TAGATTTCGTCGAAAACCGTAAGAATCTTTCTGCAGTATATATGAAAAGGAAAATGATGT 675
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 573 TCGATTTCGTCGAAAACCGTAAAAATCTTTCTGCAGTATATATGAAAAGGAAAATGATGT 632
Query 676 TCATGAAAAGTTTTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTAGATTCAAAACGTT 735
||||||||| |||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 633 TCATGAAAACTTTTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTGGATTCAGAGCGCT 692
Query 736 TGTGCAAG--CA---A-------A---TGAAGCCAAAAAGTCGAGAAGAATACCATAAAT 780
|||||||| || | | ||||||| ||||||||||||||||||| |||||
Sbjct 693 TGTGCAAGGGCATTGATTGCTCGAGCATGAAGCCGAAAAGTCGAGAAGAATACCGTAAAT 752
Query 781 GTAGTGGTGGACAAGGAAAGATTGCGTCGAAGGTGAAAATGAACCAGACCTTTCAGCCTT 840
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 753 GTAGTGGTGGACAAGGAAAGATTGCGTCGAAGGTGACAATGAACCAGACCTTTCAGCCTT 812
Query 841 CTTTTCCTTTTAATCTGCCACCGCTTTCTTGGTACATCCGTGATATCACCATCAAGATTA 900
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 813 CTTTTCCTTTTAATCTGCCACCGCTTTCTTGGTACATCCGTGAGATCACCATCAAGATCA 872
Query 901 CTAAGGCTCTGATACAAGATCTTCAAGATATGGGCGCCAAGCTCCGAGGCGTTTGAAATG 960
|||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 873 CTAAGGCTCTGATAGAAGATCTTCAAGATATGGACGCCAAGCTCCGAGGTGTTTGAAATA 932
Query 961 CCCTCAAACATTCGATAGGTTTCTAAATCACTATAGTATAAATCCGAAGAGGACAAATAC 1020
|||||||||||| ||||||||||||||| | | | | || | | ||||||||
Sbjct 933 CCCTCAAACATTAAATAGGTTTCTAAATC-C----G-A-A-----GA-G-G-ACAAATAC 977
Query 1021 TAATCTTTATAATCACTTCATTCATCTTAAC-AAGTGTATTCTT-TATACCGAATa-aaa 1077
||||||| | |||||||| ||||||||||| |||||||||||| | ||||||||| |||
Sbjct 978 TAATCTTCAAAATCACTTTATTCATCTTAATTAAGTGTATTCTTCTTTACCGAATACAAA 1037
Query 1078 aaa-aTGAGTATCGTGTTAA 1096
||| ||||||||||||||||
Sbjct 1038 AAATATGAGTATCGTGTTAA 1057
> Ahg472613 jgi|Araly1|472613|fgenesh2_kg.1__2567__AT1G23510.1
Length=755
Score = 239 bits (129), Expect = 4e-62
Identities = 331/424 (78%), Gaps = 32/424 (8%)
Strand=Plus/Plus
Query 227 TGAGAATGTGAAATCTAAGTCAAGGTCAGAAATAAAAAATACTGATCACGAAGAGAGAAA 286
|||||||||||||| |||||||| ||| | | | |||||| ||| || |||||| |
Sbjct 84 TGAGAATGTGAAATTTAAGTCAAAGTC-G-GA-GACAAATAC---TCATGAGGAGAGAGA 137
Query 287 TGAGATGAAGGAGCAACTAAAACTTTGGAGACATGCAGAGAAGAAAGAACAATGGGAA-G 345
||||||||| | ||| |||||||||||||| |||||||| |||| ||||||| |||| |
Sbjct 138 TGAGATGAAACATCAATTAAAACTTTGGAGAGATGCAGAGCAGAAGGAACAAT-GGAATG 196
Query 346 ATGTCCCTGCTAAGGTGAAGGT-G---GAA-ACA-GA---AG-ATGGTCTTTG-CCA-TG 393
||| ||| ||||||||||||| | ||| | | || || |||| | || | | |
Sbjct 197 ATGACCCACCTAAGGTGAAGGTGGAAAGAAGAAATGATCTAGAATGGGGTATGTCAACTA 256
Query 394 TGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCTACGACGTTTTGACTAATC 453
| || ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 257 TAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTACGACGTTTTAACTAATC 316
Query 454 CCGACAACCAATCATACTCAAGAATAATTAACCAACGCCACGAACTTCTGGATAACGTAT 513
| ||||||||| |||||||||||||||| || |||||| | ||| |||| ||| |||
Sbjct 317 CAGACAACCAACCATACTCAAGAATAATCAAAGGACGCCA--A-CTTTTGGAAAACATAT 373
Query 514 CAAGAAATGT-GT-TGAC-GGATAATGG-ATCGAGCCAGACG-GTGGAGGCAGAGAAAGC 568
||||||| || || | | ||||| || | | || || | ||||| ||||||||||
Sbjct 374 CAAGAAAAGTTGTGTCCCCGGATACCGGGAAAGGGC-AG-CTTGTGGACACAGAGAAAGC 431
Query 569 TGTGGCCTGGAAGTTTCTTTCATGGTCGGGAACTATCCCGATAAGT-CTAGATTTCGTCG 627
|||||||||||| || |||| | ||| ||||| |||||||||| | | | |||| |||
Sbjct 432 TGTGGCCTGGAACTTCCTTTGGTTGTCTGGAACCATCCCGATAATTGCAA-ATTTTATCG 490
Query 628 AAAA 631
||||
Sbjct 491 AAAA 494
> Ahg921413 jgi|Araly1|921413|scaffold_102694.1
Length=716
Score = 231 bits (125), Expect = 6e-60
Identities = 446/595 (75%), Gaps = 45/595 (8%)
Strand=Plus/Plus
Query 286 ATGA-GATGAAGGAGCAACTAAAACTTTGGAGACATGCAGAGAAGAAAG-AACAATGGGA 343
|||| || || |||| || ||||||||||||| ||||||||||| ||| | | ||||
Sbjct 43 ATGAGGA-GATGGAGGAAGGAAAACTTTGGAGAGATGCAGAGAAG-AAGCATCCATGGTT 100
Query 344 AGATGTCCCTGCTAAGGTGAAGGTGGA-AACAGAAGATGGTCTTTGCCATGTGGACATGG 402
|||| |||| |||| |||||||| || |||| || | |||||||||||| || || |
Sbjct 101 TGATGCCCCTCCTAAAGTGAAGGT-GACAACAAAAAAGGGTCTTTGCCATATGTACGTAA 159
Query 403 TATTTACATTAGGATTGCCTCCTCAAG--CAGCCTACGACG-TTTTGACTAATCCCGACA 459
| | ||||| ||||||||| | |||| ||| || || | |||| |||||| || | |
Sbjct 160 AAATGACATTTGGATTGCCT-C-CAAGATCAGTTTATGA-GCTTTTCACTAAT-CC-A-A 213
Query 460 ACCAATCATACTCAAGAATAATTAACCAA--C--GCCACGAACTTCTGGAT-AACGTATC 514
| ||| | ||| || | | | | ||| | | | | ||||||||| | ||| |
Sbjct 214 A-CAA-CTTAC-CACTCTTCAGTGA-CAAGTCTTGGCGCCAACTTCTGG-TAAACAAAAG 268
Query 515 AAGAAATGTGTTGACGGA-TAATGGATCGAGCCAGACGGTGGAGGCAGAGAAAGCTGTGG 573
|||||| || |||| || |||| |||| |||| ||||||| |||||| | |||||
Sbjct 269 AAGAAAGGTTTTGA-AGAGGGATGGGCCGAGGCAGATAGTGGAGGTAGAGAAGGTTGTGG 327
Query 574 CCTGGAAGTTT-CTTTCATGGTCGGGAACTATCCCGATAAGTCTAGATT-TCG-TCGAAA 630
||||| | ||| || | ||||| ||| ||| || |||| |||| ||| || | ||||
Sbjct 328 CCTGGGA-TTTCCTGTGGTGGTCTGGAGGTATGCCTATAAATCTA-ATTGCCGAT-GAAA 384
Query 631 A-CCGTAAGAATCTTTCTGCAGTATATATGAAA-AGGAAAATGATGTTCATGAAAAGT-T 687
| | ||| ||||| | | | ||||| |||| | ||||||| ||||||| ||||| |
Sbjct 385 ATGAGAAAG-ATCTTACAGGAAAATATAAGAAACA-AAAAATGAAGTTCATG-AAAGTGT 441
Query 688 TTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTAGATT-CAAAACGTTTGTGCAAGCAA 746
| |||||||| | |||||||||||||| || ||||||| | ||| | ||||||||| ||
Sbjct 442 TCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTCCGAAA-GCTTGTGCAAG-AA 499
Query 747 -ATGAAGCCAAAAAGTCGAGAAGAATACCATAAATGTAGTGGTGGACAAGGAAAGATTGC 805
| | ||||||| |||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 500 CAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGC 559
Query 806 GTCGAAGGTGAAAATGAACCAG-ACCTTTCAGCCTTCTTTTCCTTTTAATCTGCC 859
||||| |||| |||| |||| || |||||||| | | || ||||||| ||||
Sbjct 560 ATCGAAAGTGACAATGGACCAATAC-TTTCAGCCATATCCTCTTTTTAATTTGCC 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5