BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23530.1
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472616 jgi|Araly1|472616|fgenesh2_kg.1__2570__AT1G23530.1 1288 0.0
> Ahg472616 jgi|Araly1|472616|fgenesh2_kg.1__2570__AT1G23530.1
Length=1022
Score = 1288 bits (697), Expect = 0.0
Identities = 919/1017 (90%), Gaps = 52/1017 (5%)
Strand=Plus/Plus
Query 64 ACTAATAATGCATTACCCCTAATCTCACATGGAATGAAGCATATTCACATTTCTTGTTTC 123
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 25 ACTACTAATACATTACCCCTACTCTCACATGGAATGAAGCATATTCACATTTCTTGTTTC 84
Query 124 ACAAGTACCTTCTGAGTAACCCTCCTTGATCTCTACTCAAGGAACTCCACAAAAATTAAA 183
||||||||||||| | ||||||||||||||||||||||||||||| |||||| | | |
Sbjct 85 ACAAGTACCTTCTCAATAACCCTCCTTGATCTCTACTCAAGGAACACCACAAGA-T-A-- 140
Query 184 ATCTCACAACTCCAACATCTTCTTATAACACGTCTTGATTTATCTTTAAGAACCAAACAA 243
||||| | |||||||||||||||||||| | ||||||||||||||| | || |||
Sbjct 141 -TCTCA-A-CTCCAACATCTTCTTATAAC---T---GATTTATCTTTAAGATCGAATCAA 191
Query 244 A-AAAC-CAAAA-CCTAGAAGAGAAAATGGGAGATCAAGGAGTACAACAAATGCAACAGC 300
| ||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 192 ACAAAAACAAAAGCCTAGGAGAGAAAATGGGAGATCAAGGAGTACAACAGATGCAGCAGC 251
Query 301 CTATTGTTGTGTATCCAAACGCTTACAATAAACAGTATCCAGACCC-T-T-CTAC-AAAA 356
|||||||||||||||||||||||||||||||||||||||||||||| | | || | ||||
Sbjct 252 CTATTGTTGTGTATCCAAACGCTTACAATAAACAGTATCCAGACCCATCTTCTTCTAAAA 311
Query 357 --CCTTCTTCTTCCTCTGGCTCAAGCGGAAACTTTGGGACGGTCTTCATAGTCCTAGCCG 414
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 312 AACCTTCTTCTTCCTCCGGTTCAAGCGGAAACTTTGGGACGGTCTTCATAGTCCTAGCCG 371
Query 415 TGATCTTTGTCTTGTCGGCTCTTGCTTGTGTCTTTGGAAGGCTATGTAACCGTGAAAGCC 474
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 372 TTATCTTTGTCTTGTCGGCTCTGGCTTGTGTCTTTGGCAGGCTATGTAACCGTGAAAGCC 431
Query 475 GCGCGGCTAAGCAGCAACATAGCAAGCATCCGAAGCATGAGAAAGCTTCTTCCAAGAAGA 534
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 432 GTGCGGCTAAGCAGCAACATAGCAAGCATCCAAAGCATGAGAAAGCTTCTTCCAAGAAGA 491
Query 535 GCCGTGAGATTCGGCCTGTGGAGCGTGAGCCGAGGGAGAGAGGTGATATGGATTTTGG-T 593
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 492 GCCGTGAGATTCGTCCTGTGGAGCGTGAGCCGAGGGAGAGAGGTGATATGGAGTTTGGGT 551
Query 594 TTCGATATGAAACGGCCTGAACCAATTGAGAAACCTTCTGGAAGAGACG--GA--G---- 645
|| ||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 552 TT-GATATGAAACGGCCTGAGCCAATTGAGAAACCTTCTGGAAGAGACGAAGAAAGACAT 610
Query 646 -GAGAGGACATAGAATTCGGGTTTGATAACAAGAGAGGTGAAAGAGGCCGCGAAGGCGGA 704
|||||||||||||| |||| ||||||||||||||||| ||||||||| | || ||||||
Sbjct 611 AGAGAGGACATAGAAATCGGATTTGATAACAAGAGAGGAGAAAGAGGC-G-GA-GGCGGA 667
Query 705 GGCGGAGGAGGACCACCTCCACCGAATATCAAACATGCAGTGAGGTTCAAGCTACCGGAA 764
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 668 GGCCGAGGAGGACCACCTCCACCGAGTATCAAACATGCAGTGAGGTTCAAGCTACCGGAA 727
Query 765 AATGGAGATCATCATTCTAAAGGAGAGATCAGACGTGGAGGTCCTTCCTTCGAGTTCCGA 824
|||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 728 AATGGAGAACATCATTCTAAAGGAGAGATCATACGTGGAGGTCCTGACTTCGAGTTCCGA 787
Query 825 CCAGGACACTAATGATCTTAATTTGTTTAAGAACAAA-TCACTTGAT----ATGTCTTTA 879
|||||||||||||||||||||||||| |||||||||| | |||| || ||||||| |
Sbjct 788 CCAGGACACTAATGATCTTAATTTGTCTAAGAACAAACT-ACTTTATGTTTATGTCTTAA 846
Query 880 TTACTTCCTCACTTTCATTTCTTTTGTGCtttttttCTTTTCTGGTT-GATTC-TT--C- 934
|| |||||||||||| ||||||||||||| ||||| ||||||||||| ||||| || |
Sbjct 847 TTGCTTCCTCACTTTTATTTCTTTTGTGCCTTTTT-CTTTTCTGGTTTGATTCGTTTTCC 905
Query 935 TT---ATGGGTATGGAACTTAGTGCTGAAGCTATCAAACTTCTTATTAGTCTCTTGGTGT 991
|| || |||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 906 TTCTTATTGGTATGGATCTTAGAGCTGAAGCTATCAAACTTCTCAT-AGTCTCTTGGTGT 964
Query 992 GATGTATAAAGTCGTCTCTCTACATATCAAAGGTACTAAATAAAATCCATAATATTT 1048
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GATGTATAAAGTAGACTCTCTACATATCAAAGGTACTAAATAAAATCCATAATATTT 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5