BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23540.1
Length=2278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472617 jgi|Araly1|472617|fgenesh2_kg.1__2571__AT1G23540.1 2080 0.0
Ahg314348 jgi|Araly1|314348|fgenesh1_pm.C_scaffold_1003128 211 2e-53
Ahg474345 jgi|Araly1|474345|fgenesh2_kg.1__4299__AT1G52290.1 171 3e-41
> Ahg472617 jgi|Araly1|472617|fgenesh2_kg.1__2571__AT1G23540.1
Length=2282
Score = 2080 bits (1126), Expect = 0.0
Identities = 1407/1536 (92%), Gaps = 46/1536 (3%)
Strand=Plus/Plus
Query 1 ATGTCAGACTTAGGCGAGTCGCCGAGTTCTTCACCACCAGCACCACCAGCTGATACCGCT 60
|||||||||| |||||| ||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGTCAGACTCAGGCGATTCGCCGAGTTCTT---------CACCACCAGCTGATTCCGCT 51
Query 61 CCTCCACCAGAGACTCCATCAGAAAACTCAGCTCTTCCACCTGTTGATTCCTCTCCTCCT 120
||||| ||||| ||| |||| | ||| || |||| |||||||||||| || |||||||||
Sbjct 52 CCTCCGCCAGATACTTCATCCGGAAATTCTGCTCCTCCACCTGTTGAATCTTCTCCTCCT 111
Query 121 AGTCCACCAGCTGATTCATCATCAACACCGCCGCTGTCAGAACCATC-CACTCCTCCTCC 179
|||||||| |||||||||||| | |||||| || ||| ||||| || | ||||||||||
Sbjct 112 AGTCCACCGGCTGATTCATCA-C--CACCGCAGCCGTCGGAACCGTCGC-CTCCTCCTCC 167
Query 180 AGATTCACAGCTTCCTCCTTTACCTTCGATTCTTCCTCCGCTAACAGATTCTCCACCTCC 239
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 168 CGATTCACAGCTTCCTCCTTTACCTTCGATTCTTCCTCCGATAACAGATTCTCCACCTCC 227
Query 240 ACCTTCCGATTCTTCTCCACCCGTTGATTCAACCCCTTCTCCGCCGCCACCGACGTCAAA 299
||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 228 GCCTTCTGATTCTTCTCCACCGGCTGATTCAACCCCTTCTCCGCCGCCACCGACGTCAAA 287
Query 300 CGAATCTCCTTCTCCTCCAGAAGATTCCGAAACACCACCTGCTCCACCAAATGAATCCAA 359
|||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||| ||||
Sbjct 288 CGAATCGCCTTCTCCTCCGGCGGATTCTGAAACACCACCGGCTCCACCAAATGAACCCAA 347
Query 360 TGACAACAACCCTCCTCCGTCTCAAGATCTTCAATCGCCTCCTCCATCGTCGCCGTCGCC 419
||||||||||||||||||||||||| || ||||||||||||||||||| | |||||
Sbjct 348 TGACAACAACCCTCCTCCGTCTCAACATGTTCAATCGCCTCCTCCATC-T-----TCGCC 401
Query 420 GAATGTAGGACCCACAAACCCGGAATCACCACCGTTACAATCTCCTCCAGCTCCACCAGC 479
|| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 402 GAGTGTAGGACCCACAAACCCGGAATCACCACCGTCACAATCTCCTCCGGCTCCACCATC 461
Query 480 ATCAGATCCTACAAATTCACCGCCAGCTTCACCATTAGACCCTACCAATCCTCCCCCAAT 539
|||||||||||| |||||||| |||||| |||||| |||||||||||| |||||||||||
Sbjct 462 ATCAGATCCTACCAATTCACCTCCAGCTCCACCATCAGACCCTACCAAACCTCCCCCAAT 521
Query 540 ACAACCATCAGGACCAGCCACTTCTCCTCCGGCTAATCCCAACGCTCCGCCGAGCCCATT 599
||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct 522 TCAACCATCAGGACCAACCACTTCTCCTCCGGCTAATCCCAAAGCGCCGCCGAGCCCATT 581
Query 600 CCCCACAGTACCACCCAAAACTCCTTCTAGTGGACCTGTGGTGTCTCCATCTCTCACA-T 658
| ||||| ||||||||||||| |||| |||||||| | || ||||||||||||||| |
Sbjct 582 CTACACAGCACCACCCAAAACTGCTTCCGGTGGACCTATCGTCTCTCCATCTCTCACAGT 641
Query 659 CCCCTAGTAAAGGAACTCC-TACTCCAAACCAAGGCAATGGAGATGGCGGTGGCGGTGGT 717
||| || |||||||| || | || ||||||||||||||||||| ||||
Sbjct 642 TCCC-AGCAAAGGAACGCCTTCCT-CAAACCAAGGCAATGGAGA------------TGGT 687
Query 718 GGCGGCTATCAAGGGAAGACTATGGTTGGTATGGCTGTAGCCGGTTTCGCAATCATGGCG 777
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 688 GGCGGCTATCAAGGGAAGACTATGGTTGGTATGGCTGTAGCGGGTTTCGCGATCATGGCG 747
Query 778 CTTATAGGC-GTTGTGTTCTTAGTGAGAAGAAAGAAAAAGAGAAACATTGATAGCTATAA 836
|||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 748 CTTATA-GCGGTTGTGTTCTTAGTGAGAAGAAAGAAGAAGAGAAACATTGATAGTTATAA 806
Query 837 TCACTCACAGTACTTGCCACATCCCAATTTCTCTGTTAAATCAGATGGATTCTTATACGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TCACTCACAGTACTTGCCACATCCCAATTTCTCTGTTAAATCAGATGGATTCTTATACGG 866
Query 897 TCAAGATCCAGGTAAAGGATACTCCTCTGGTCCTAATGGTTCAATGTATAACAATTCACA 956
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 867 TCAAGATCCAGGTAAAGGATACTCCTCTGGTCCTGGTGGTTCAATG--T-ACAATTCACA 923
Query 957 GCAACAACAATCCTCTATGGGAAACAG-TTATGGTACAGCTGGTGGTGGTTATCCTCATC 1015
||||||||| ||||||||||||||||| || || ||| | | ||||||||||||||||
Sbjct 924 GCAACAACATTCCTCTATGGGAAACAGCTT-CGGCACA-C-AG-GGTGGTTATCCTCATC 979
Query 1016 ATCAAATGCAATCAAGTGGCACACCTGACTCTGCTATACTCGGAAGTGGCCAGACTCATT 1075
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 980 ATCAAATGCAATCCAGTGGCACACCTGACTCTGCTATACTCGGAAGTGGCCAGACACATT 1039
Query 1076 TCAGTTACGAAGAGCTTGCTGAGATAACACAAGGCTTTGCTCGCAAAAACATTCTTGGAG 1135
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1040 TCAGTTACGAAGAGCTTGCAGAGATAACACAAGGCTTTGCTCGCCAAAACATTCTTGGAG 1099
Query 1136 AAGGCGGATTTGGATGTGTCTATAAAGGTACATTGCAGGATGGTAAAGTTGTTGCGGTTA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AAGGCGGATTTGGATGTGTCTATAAAGGTACATTGCAGGATGGTAAAGTTGTTGCGGTTA 1159
Query 1196 AGCAGCTTAAAGCTGGAAGTGGACAAGGTGACCGTGAATTCAAAGCAGAGGTTGAGATCA 1255
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1160 AGCAGCTTAAAGCTGGAAGTGGACAAGGTGACCGTGAATTCAAGGCAGAGGTTGAGATCA 1219
Query 1256 TCAGCCGCGTTCATCATCGCCATTTGGTCTCTCTGGTTGGTTACTGCATTTCAGACCAGC 1315
||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1220 TCAGCCGCGTTCACCATCGCCATTTGGTCTCTCTGGTCGGTTACTGCATTTCGGACCAAC 1279
Query 1316 ATAGATTGCTTATCTATGAGTATGTTTCTAATCAAACCTTGGAGCATCATTTGCATGGAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1280 ATAGATTGCTTATCTATGAGTATGTTTCTAATCAAACCTTGGAGCATCATTTGCACGGAA 1339
Query 1376 AGGGTTTGCCAGTTTTAGAGTGGTCTAAGAGAGTCCGGATCGCTATAGGATCAGCCAAAG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGGGTTTGCCAGTTTTAGAGTGGTCTAAGAGAGTCCGGATCGCTATAGGATCAGCCAAAG 1399
Query 1436 GGTTGGCATATCTTCACGAAGACTGTCATCCGAAAATCATTCACAGAGATATAAAGTCAG 1495
||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1400 GGTTGGCGTATCTTCACGAAGACTGTCATCCGAAAATCATACACAGGGACATAAAGTCAG 1459
Query 1496 CAAATATTCTTCTAGATGATGAATATGAAGCTCAGG 1531
||||||||||||||||||||||||||||||||||||
Sbjct 1460 CAAATATTCTTCTAGATGATGAATATGAAGCTCAGG 1495
Score = 1214 bits (657), Expect = 0.0
Identities = 713/740 (96%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 1531 GTTGCTGATTTTGGACTTGCTAGACTCAATGATACAACACAAACTCATGTTTCAACTCGG 1590
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1543 GTTGCTGATTTTGGACTTGCTAGACTCAATGATACAACACAAACTCACGTTTCAACTCGG 1602
Query 1591 GTTATGGGAACCTTCGGGTACCTAGCGCCGGAATATGCATCAAGTGGAAAATTGACTGAT 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 GTTATGGGAACCTTCGGGTACCTAGCGCCGGAATATGCATCAAGTGGAAAATTGACTGAT 1662
Query 1651 AGATCCGATGTATTCTCATTCGGGGTTGTTCTCTTAGAGCTTGTAACTGGACGGAAACCA 1710
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1663 AGATCCGATGTTTTCTCGTTCGGAGTTGTTCTCTTAGAGCTTGTAACTGGACGGAAACCA 1722
Query 1711 GTTGACCAGACTCAGCCTCTAGGAGAAGAGAGTTTGGTTGAATGGGCGCGCCCGCTGCTT 1770
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 GTTGATCAGAGTCAGCCTCTAGGAGAAGAGAGTTTGGTTGAATGGGCGCGCCCGCTGCTT 1782
Query 1771 CTCAAAGCCATTGAGACCGGAGATTTAAGCGAACTGATTGATACACGGCTTGAAAAGCGT 1830
||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1783 CTCAAAGCCATTGAGACTGGAGATTTAAGCGAACTGATTGATAGACGGCTTGAACAGCAT 1842
Query 1831 TATGTGGAGCATGAAGTCTTCAGAATGATCGAGACAGCCGCTGCATGTGTTAGACATTCT 1890
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 TATGTGGAGCAGGAAGTCTTCAGAATGATCGAGACAGCCGCTGCATGTGTTAGACATTCT 1902
Query 1891 GGTCCAAAACGCCCACGCATGGTTCAGGTTGTGAGAGCATTGGACTGCGACGGAGACTCG 1950
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 GGTCCAAAACGTCCACGCATGGTTCAGGTTGTGAGAGCATTGGACTGCGACGGAGACTCG 1962
Query 1951 GGAGATATTAGCAACGGAATCAAAATTGGGCAAAGCACAACTTATGACTCAGGGCAATAC 2010
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1963 GGAGATATTAGCAACGGGATCAAAGTTGGGCAAAGCACAACTTATGACTCAGGGCAATAC 2022
Query 2011 AATGAAGACATTATGAAATTCAGGAAAATGGCGTTTGGTGGTGATAACAGCGTAGAGTCA 2070
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 2023 AATGAAGACATCATGAAATTCAGAAAAATGGCGTTTGGTGTTGATAACAGCGTAGAGTCA 2082
Query 2071 GGATTGTACAGTGGAAACTACTCTGCCAAAAGCTCTTCAGATTTCTCAGGGAATGAATCT 2130
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 GGATTGTACAGTGGAAACTACTCTGCCAAAAGCTCTTCAGATTTCTCAGGGAATGAATCC 2142
Query 2131 GAGACTCGGCCTTTCAACAACCGACGGTTCTGATCATACAATAGGTGAAAGTAACAGATA 2190
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143 GAGACTCGGCCTTTCAATAACCGACGGTTCTGATCATACAATAGGTGAAAGTAACAGATA 2202
Query 2191 CCTCTGCCTCCT----CGTTCTAAAGCCATTCTTTTCGTATATTACATTTATTGGTAGGT 2246
|||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 2203 CCTCTGCCTCCTTGGGCGTTGTAAAGCCATTCTTTTCGTATATTGCATTTCTTGGTAGGT 2262
Query 2247 GCCTTTAGTTTTTGCCCTCT 2266
|||||||||||||| |||||
Sbjct 2263 GCCTTTAGTTTTTGTCCTCT 2282
> Ahg314348 jgi|Araly1|314348|fgenesh1_pm.C_scaffold_1003128
Length=2103
Score = 211 bits (114), Expect = 2e-53
Identities = 495/671 (74%), Gaps = 57/671 (8%)
Strand=Plus/Plus
Query 1075 TTCAGTTACGAAGAGCTTGCTG-AGATAACACAAGGCTTTGCTCGCAAAA-A-C-ATTCT 1130
|||| |||||| |||||||| | | ||| ||||| ||| || ||||| | | || |
Sbjct 973 TTCACTTACGAGGAGCTTGCAGCCG-CAACTCAAGG-TTT-CT--CAAAAGATCGCTTGT 1027
Query 1131 T-GGAGAAGGCGGATTTGGATGTG-TCTATAAAGGTACATTG-CAGGATGGTAAAGTTG- 1186
| ||| ||||||| ||||||| || || | ||||| | |||| || | ||| ||| |
Sbjct 1028 TGGGACAAGGCGGGTTTGGATATGTTC-ACAAAGGAATATTGCCA-AACGGT-AAGGAGA 1084
Query 1187 TTGCGGTTAAGCAG-CTTAAAGCTGGAAGTGGACAAGGTGACCGTGAATTCAAAGCAGAG 1245
| ||||| ||| || || ||||| ||||| || |||||||| | || ||| | ||||||
Sbjct 1085 TCGCGGTGAAG-AGCCTAAAAGCCGGAAGCGGGCAAGGTGAGAGAGAGTTCCAGGCAGAG 1143
Query 1246 GTTGAGATCATCAGCCGCGTTCATCATCGCCAT-TTG-GTCTCTCTGGTTGGTTACTGCA 1303
||||||||||||||||||||||||||| | ||| ||| |||||| || | || |||||||
Sbjct 1144 GTTGAGATCATCAGCCGCGTTCATCATAGACATCTTGTGTCTCT-TG-TCGGATACTGCA 1201
Query 1304 TT--TCAGACCAGCATAGA--TTGCTTA-TCTATGAGTATGTTTCTAATCAAAC-CTTGG 1357
| | || || | ||| ||| || ||||||||| | | ||||| | || ||||
Sbjct 1202 GTAATGAGGG-AGGACAGAGGTTG-TTGGTCTATGAGTTTCTCCCTAATGACACACTTG- 1258
Query 1358 AGCATC-AT-TTGCATGG-AAAGGGTTTGCCAGTTTTAGAGTGGTCTAA-GAGAGTCCGG 1413
|| || | || ||||| ||| | | | | || | || ||| | || |||| || |
Sbjct 1259 AGT-TCCACCTT-CATGGGAAAAG-TGGGACTGTGATGGATTGGCC-AACGAGAATCAAG 1314
Query 1414 ATCGC-TATAGGATCAGCCAAAGGG-TTGGCATATCTTCACGAAGACTGTCATCCGAAAA 1471
|| || | |||||||||| ||||| ||| | ||||| || ||||| |||||||| ||||
Sbjct 1315 ATTGCCT-TAGGATCAGCAAAAGGTCTTG-CTTATCTACATGAAGATTGTCATCCAAAAA 1372
Query 1472 TCATTCACAGAGATAT-AAAGTCAGCAAATATTCTTCTAGATGATGAA-TAT-GAAGCTC 1528
|||| || ||||| || |||| | |||| ||||| || || || || | | ||||| |
Sbjct 1373 TCATCCATAGAGACATTAAAG-CTTCAAACATTCTCCTTGACCAT-AACT-TCGAAGC-C 1428
Query 1529 A-GGTTGCTGATTTTGGACTTG-CTAGACTCAATGAT-ACAACACAAACTCATGTTTCAA 1585
| |||||| |||||||| ||| | | |||| | | ||||| | || ||||| || |
Sbjct 1429 AAGGTTGCAGATTTTGGT-TTGGCCAAACTCTCTCAAGACAACT-ATACACATGTATCGA 1486
Query 1586 CTCGGGTTATGGGAACCTTCGGGTACCTAGCGCCGGAATATGCATCAAGTGGAAAATTGA 1645
|||| ||||||||||| ||||| ||| |||| || |||||||||||||| || ||| | |
Sbjct 1487 CTCGTGTTATGGGAACATTCGGATACTTAGCTCCTGAATATGCATCAAGCGGGAAACTAA 1546
Query 1646 CTGATAGATCCGATGTATTCTCATTCGGGGTTGTTCT-CTTAGAGCTTGTAACTGGACGG 1704
| || | ||| ||||| ||||| || || ||| | || ||| ||||| |||| |||||
Sbjct 1547 CAGAGAAATCAGATGTTTTCTCTTTTGGAGTTATGCTTCTT-GAGCTCATAACCGGACGC 1605
Query 1705 AAACCAGTTGA 1715
| ||| |||||
Sbjct 1606 AGACCGGTTGA 1616
> Ahg474345 jgi|Araly1|474345|fgenesh2_kg.1__4299__AT1G52290.1
Length=1791
Score = 171 bits (92), Expect = 3e-41
Identities = 392/534 (73%), Gaps = 32/534 (6%)
Strand=Plus/Plus
Query 1186 GTTGCGGTTAAGCAGCTTAAAGCTGGAAGTGGACAAGGTGACCGTGAATT-CAAAGCAGA 1244
||||| |||||||||||||||||||||||||||||||||| || || || ||| || ||
Sbjct 604 GTTGCTATTAAGCAGCTTAAAGCTGGAAGTGGACAAGGTGAACGAGAGTTTCAA-GCTGA 662
Query 1245 GGTTGAGA-TCATCAGCCGCGTTCATCATCGCCAT-TTGGTCTCTCTGGTTGGTTACTGC 1302
| | | | | || || | ||||||||| | ||| ||| | ||||| ||||||| ||
Sbjct 663 GATACAAACT-ATTAGTAGAGTTCATCATAGGCATCTTGTT-TCTCTTCTTGGTTATTGT 720
Query 1303 ATTTCAG-ACCAGCATAGATTGCTTATCTATGAGTATGTTTCTAATCAA-AC-CTTGGAG 1359
|| | | | | || ||||| ||| | ||||||| ||| ||||| || || || | ||
Sbjct 721 ATCACTGGAGCT-CAAAGATTACTTGTTTATGAGTTTGTGCCTAAT-AAGACTCTAG-AG 777
Query 1360 CATCATTTGCATG-GAAAGGGTTTGCCAGTTTTAGAGTGGTCTAAGAG-AGTCCGGATCG 1417
||||||||| | ||||||| || || | |||||||| ||||| | | ||| |
Sbjct 778 TTTCATTTGCACGAGAAAGGGAGA-CCGGTAATGGAGTGGTCCAAGAGGA-TGAAGATTG 835
Query 1418 CTATAGGAT-CAGCCAAAGGGTTGGCATATCTT-CACGAAGACTGTCATCCGAAAATCAT 1475
|| | || | |||| ||||| |||||||| ||| || ||||| ||| |||| || | ||
Sbjct 836 CTTTGGG-TGCAGCTAAAGGATTGGCATA-CTTACATGAAGATTGTAATCCTAAGA-CAA 892
Query 1476 T-CACAGAGATATAAAGTCAGCAAATATTCTTCTAGATGAT-GAATATGAAGCTCAGGTT 1533
| ||| | ||| | ||| | ||||||||||| | |||||| | | ||| || || |
Sbjct 893 TACACCGCGATGTCAAGGCTGCAAATATTCTGATCGATGATAGCTT-TGAGGCGAAGCTA 951
Query 1534 GCTGATTTTGGACTTGCTAGA-CT-CAATGATACAACACAAACTCATGTTTCAACTCGGG 1591
|| ||||||||||| || || || | || ||| | | ||||||||||| ||||||
Sbjct 952 GCAGATTTTGGACTCGCCAGGTCTTCTTTGG-ACA-CTGATACTCATGTTTCCACTCGGA 1009
Query 1592 TTATGGGAACCTTCGGGTACCTAGCGCCGGAATATGCATCAAGTGGAAAATTGACTGATA 1651
| |||||||| ||||| ||| | || || |||||||| || ||| ||| | |||||||
Sbjct 1010 TAATGGGAACATTCGGTTACTTGGCTCCTGAATATGCTTCTTCTGGGAAACTCACTGATA 1069
Query 1652 GATCCGATGTATTCTCATTCGGGGTTGTTCT-CTTAGAGCTTG-TAACTGGACG 1703
||| ||||| |||||||| || || || || ||| || ||| |||| |||||
Sbjct 1070 AATCAGATGTCTTCTCATTTGGAGTGGTGCTTCTT-GAA-TTGATAACCGGACG 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85779231740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5