BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23550.1
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912222 jgi|Araly1|912222|Al_scaffold_0001_2476 1280 0.0
Ahg472619 jgi|Araly1|472619|fgenesh2_kg.1__2573__AT1G23560.1 211 1e-53
> Ahg912222 jgi|Araly1|912222|Al_scaffold_0001_2476
Length=954
Score = 1280 bits (693), Expect = 0.0
Identities = 883/973 (91%), Gaps = 20/973 (2%)
Strand=Plus/Plus
Query 120 ATGGCGGCGCAGGTCGAAATTGAGGACCAAACGTCCGTCACCAACCTTGATAATGGCGAA 179
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGCAGGTCGAAATTGAGGACCAAGCGTCTGTCACCAACCTTGATAATGGCGAA 60
Query 180 ATATTCGATTCAATCTCCGACGATGCTGATTCTTCTGTTTCTCACGCCGGATCTTCTTTC 239
|| ||||||||| |||||||||||||||||||||| |||| | || | |
Sbjct 61 ATCTTCGATTCACTCTCCGACGATGCTGATTCTTC---TTCTTTCTCC--A-----AAAC 110
Query 240 TCTTCCTCTTCACTGATCCTTCTCGGCGAAGGAAACCCAGAGCACGACGTTATCAAGACG 299
| ||| | ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 111 -C-GACTC-T--CTGATTCTTCTCGGTGAAGGAAACCCAGAGCACGATGTTATCAAGACG 165
Query 300 TGTTTACTCTCGGGAATGGGTGTTGTTTCTAGCGACACGACGATCGTTACGATTAGTAAA 359
||||||||||| |||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 166 TGTTTACTCTCTGGAATGGGTGTTGTATCTAGCGACACGACGATCGTGACGATTCGTAAA 225
Query 360 AACTCTTCGGAACGAGGAATCACGACGAGAGCCAAGTTT-TTGGCGTTTAGGATTTTCAC 418
||||| |||| | |||||||||||||||||| |||||| || ||||||||||||||||
Sbjct 226 AACTCATCGG-A--AGGAATCACGACGAGAGCTAAGTTTCTT-TCGTTTAGGATTTTCAC 281
Query 419 TGACGCTGTTGCGAGGAAACACGGCGGAGATGCTAATGTGAAATATGGTTGGTACGCTGG 478
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 282 TGACGCTGTGGCGAGGAAACACGGCGGAGATGCGAATGTTAAATATGGTTGGTACGCTGG 341
Query 479 TTCTAGAGATGAGATTCAAAGAATCATCTCTTACGGATTTAGCAATCGTGATGTTGGAAA 538
||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 342 TTCTAAACCGGAGATTCAAAGTATCATCTCTTACGGATTTAGTAATCGTGATGTTGGAAA 401
Query 539 ATTTGAAAATGATGGTGGTTCTCATGGAATTGGAATCCATTTGGTTCCTTCCAAGTGTTC 598
||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 402 ATTCGAGAATGATGGTTGTTCTCATGGAATTGGAATCCATTTGGTTCCTTCTAAGTGTTC 461
Query 599 TCTACTTGCGGCTTCAGCTACAGAGCAAGATGAAGAAGGTTTACGATATCTTCTGTTATG 658
||| |||||||||||||||||||||| |||||| ||||||||| |||||||||| |||||
Sbjct 462 TCTTCTTGCGGCTTCAGCTACAGAGCCAGATGAGGAAGGTTTAAGATATCTTCTCTTATG 521
Query 659 CCGTGTAATCTTAGGGAAACCTGAGATAATCATCTCCGGCTCTAAACAATCGTATCCGAG 718
|||| | ||||| |||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 522 CCGTTTGATCTTGGGGAAACCTGAGTTAATCATCTCAGGCTCTAAGCAATCGTATCCGAG 581
Query 719 TTCTGCTGAGTTTGATTCTGGTGTGGATGATTTACACAATCCTAGAAACTATGTGATTTG 778
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 582 CTCAGCTGAGTTTGATTCTGGTGTGGATGATCTACACAATCCTAGAAACTATGTCATATG 641
Query 779 GAGTTGTAACATGAATTCGTGTATTCTTCCGAGTTATATCGTCAGTTTTAGGTCTCCTAG 838
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
Sbjct 642 GAGTTGTAACATGAATTCGTTTATACTTCCGAGTTATATCGTCAGTTTTAGGTCTCCTCG 701
Query 839 ACTGAGAGTGAGTAGAGGTGGTTTTGCTTCGAGACCAAGCTCGCCGTGGGTTAGTTTTGC 898
|| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 702 TCTTAGAGTAAGTAGAGGTGGTTTTGCTGCAAGACCAAGCTCGCCGTGGGTTAGTTTTGC 761
Query 899 TTCCTTGATGTCAATGTTGTCTACATCAATGGATCCTTCAAGAATGAACTTGATCATCCG 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 762 CGCCTTGATGTCAATGTTGTCTAAATCAATGGATCCTTCAAGAATGAACTTGATCATCCG 821
Query 959 AACTTACGATGATTTTCGGAAACGGAAGATTAGGAGAGACCAATTGGTAAGGAAGATGAG 1018
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 822 AACTTACGATGATTTTCGGAAACGGAAGATCAGGAGAGACCAATTGGTTAGGAAGATGAG 881
Query 1019 AGAAGTGGCTGGAGATAATCTTTTGGCTGAGATAATCAAGAATCACAAAAACAGAAACAA 1078
||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 882 AGAAGTGGCTGGAGACAATCTTTTGGCTGAGATAATCAAGAATCACAGAGACAAAAACAA 941
Query 1079 GGTCACGAATTaa 1091
| ||| |||||||
Sbjct 942 GATCAAGAATTAA 954
> Ahg472619 jgi|Araly1|472619|fgenesh2_kg.1__2573__AT1G23560.1
Length=1285
Score = 211 bits (114), Expect = 1e-53
Identities = 143/157 (91%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 1196 GTGGAAGGAACTATATGAGAGATTTGATGCAttttttttttCTATTGGAAGGTGTAGTTT 1255
||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||
Sbjct 1285 GTGGAAGGAACTATATGAGAGATTTAATGCATTTTTTTTTCCTATTGGAAGGTATAGTTT 1226
Query 1256 CCGTTAGTGGTAAAAACAGAGGATCCCTTTTGGGAAACTTGTAAAGAGCTTGAACA-TTA 1314
| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 1225 CTGTTAGTGGTGAAAACAGAGGATCTCTTTTGGGAAACTTGTAAAGAGCTTGAA-AGTTA 1167
Query 1315 CAAATCTCCAGAATAATCAAGAAATTCTAGAATCACA 1351
||||| ||||||| ||||||||| ||| | || ||||
Sbjct 1166 CAAATTTCCAGAACAATCAAGAAGTTCCAAAACCACA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50550987942
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5