BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23560.1
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472619 jgi|Araly1|472619|fgenesh2_kg.1__2573__AT1G23560.1 1888 0.0
> Ahg472619 jgi|Araly1|472619|fgenesh2_kg.1__2573__AT1G23560.1
Length=1285
Score = 1888 bits (1022), Expect = 0.0
Identities = 1203/1290 (93%), Gaps = 13/1290 (1%)
Strand=Plus/Plus
Query 1 ATAACCTTTGATTAATCAAACCTTTCTCTATGTGTTTTTCCCTCAAACCACATCGTTGAC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAATCTTTGATTAATCAAACCTTTCTCTATGTGTTTTTCCCTCAAACCACATCGTTGAC 60
Query 61 TTGGATCTCTCATTGTCATCTTGTTCTGTTTTTGTGACCTAATTTTACAGAAACAAAATG 120
|| |||||||||||||||||||| ||||||||||| ||||| |||| ||||||||| |||
Sbjct 61 TTTGATCTCTCATTGTCATCTTGCTCTGTTTTTGTAACCTATTTTTGCAGAAACAAGATG 120
Query 121 GGTGTATCTGAAATTTCAAGATCAGAGGAGAAGAGCGGTATAGGTTTCGTTAAATTGTTT 180
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGTGGATCTGAAATTTCAAGATCAGAGGAGAAGAGCGGTATCGGTTTCGTTAAATTGTTT 180
Query 181 GAAAATAA-CGTTGTGTTTCCTGGATTTTTGGTATGGATGAATCAAACAATTCAAGAGCC 239
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAATAATC-TTGTGCTTCCTGGATTTTTGGTATGGATGAATCAAACAATTCAAGAGCC 239
Query 240 TCTTAAGGCTGAGTTCAAA-AGATTAAGGAATGTGAAAGAGCTAAG-TT--TGAAGTCAG 295
| ||||||||||||| ||| |||||||||||||| ||||||||| | || | ||||| |
Sbjct 240 TATTAAGGCTGAGTT-AAAGAGATTAAGGAATGTTAAAGAGCTAGGCTTGGTTAAGTCGG 298
Query 296 TGTCAAAGATAGAGACTGCTTATGAGGAGCATAGAGATGAAGAGAAGTTAGAGAAGCAAT 355
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 299 TGTCAAAGATAGAGACTATTTATGATGAGCATAGAGATGAAGAAAAGTTAGAGAAGCAAC 358
Query 356 TACAAGCTTGGAGAGATAATCCCTCATGGATAGATCAGCCTCCTAAAGTGGTGGTGAAAT 415
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 359 TACAAGCTTGGAGAGACAATCCTTCATGGATAGATCAACCTCCTAAAGTGGTGGTGAAAT 418
Query 416 CACAAAATGGTTTGTTTTGCCATTTAAACATTGAAGCAGACGTAGGATTGCCTCCTGAAT 475
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 419 CACAAAATGGTTTGTTTTGCCATCTGAACGTTGAAGCAGACGTAGGATTGCCTCCTGAAC 478
Query 476 TAGTATACAACATTTTCACTCATCCAGACAACAAAAGATACTTCAAAAACATCAAGGAAA 535
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGTCTACAACATTTTCACTCATCCAGACAACAAAAGATACTTCAAAAACATCAAGGAAA 538
Query 536 ACATATCAAGAAAAGTTTTGATCGA-CGAAGGGCCAAAGCAGACCGTGGAAGTGAAGCAA 594
||||||| ||||||||||||||| | |||||||| ||||||||| ||||| |||||||||
Sbjct 539 ACATATCGAGAAAAGTTTTGATC-AGCGAAGGGCTAAAGCAGACTGTGGAGGTGAAGCAA 597
Query 595 GCCGCGGCCTGGAAGTTCCTTTGGTGGGATGGAACTTGTCCTATACATCTCATTGTCGAA 654
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 598 GCCGCGGCCTGGAAGTTCCTTTGGTGGGCTGGAACTTGCCCTATACATCTCATTGTCGAA 657
Query 655 GAAAACCGGAAAAATCTCACTTCAAAATATAAGCAAGAGACAACAATGTTCATGAAAGTG 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAAAACCGGAAAAATCTCACTTCAAAATATAAGCAAGAGACAACAATGTTCATGAAAGTA 717
Query 715 TTTGAGGGTTGTTGGAAAGTGGAGCCATTGTTTATAGACGAACATTTGTGTGACCGCTCA 774
||||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 718 TTTGAAGGTTGTTGGAAAGTTGAACCATTATTTATAGACGAACATTTGTGTGAGCGCTCA 777
Query 775 AAGCCAAAATCTCAAAAAGATTACCATAGCTGTAGCAACGGACGAGGAAGGATCGGATCA 834
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AAGCCAAAATCTCAAGAAGATTACCATAGCTGTAGCAACGGACGAGGAAGGATCGGATCG 837
Query 835 AAGGTGACAATGGATCAAATGTTTCAGCCTTCAGCTCTTCTTACTCCCCCGCCACTTTCT 894
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 838 AAGGTGACAATGGATCAAATGTTTCAGCCTTCTGCTCTTCTTACTCCACCACCACTTTCT 897
Query 895 TGGTACATACGTGGGATCACCATTAAAACCACAGAGAGTATGATCGAAGATCTTTTCGCT 954
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 898 TGGTACATACGTGGGATCACTATTAAAACCACAGAGAGTATGATCGAAGATCTATTCGCT 957
Query 955 GAAGCTACTAGACTTCGGGGAGGAAAAGGAGGAGGCTATATTGATGATCAAGGAGAAAAC 1014
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 958 GAAGCTAGTAGACTTCGGGGAGGAAAAGGAGGAGGCTATATTGCTGATCAAGAAGAAAAC 1017
Query 1015 AATGTGGTAACCGAAAAGAGCAAAGCTGATGACATTAAGGAAAGATGGAGATCACATAGG 1074
|| || ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 AACGTCGTATTCGAGAAGAGCAAAGCTGATGACATTAAGGAAAGATGGAGATCGCATAGG 1077
Query 1075 AGAAGTAAACGGAGGAGATTTAC-AACTGCTAGGTCAATGTAATTGAAGAGACTGTGATT 1133
|||| ||| |||||||||||||| || | ||||| |||||||||| |||||| |||| ||
Sbjct 1078 AGAACTAAGCGGAGGAGATTTACTAA-TCCTAGGACAATGTAATTAAAGAGATTGTGGTT 1136
Query 1134 CTAGAATTTCTTGATTATTCTGGAGATTTGTAA-TGTTCAAGCTCTTTACAAGTTTCCCA 1192
| ||| ||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1137 TTGGAACTTCTTGATTGTTCTGGAAATTTGTAACT-TTCAAGCTCTTTACAAGTTTCCCA 1195
Query 1193 AAAGGGATCCTCTGTTTTTACCACTAACGGAAACTACACCTTCCAATAGaaaaaaaaaaT 1252
|||| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 1196 AAAGAGATCCTCTGTTTTCACCACTAACAGAAACTATACCTTCCAATAGGAAAAAAAAAT 1255
Query 1253 GCATCAAATCTCTCATATAGTTCCTTCCAC 1282
|||| |||||||||||||||||||||||||
Sbjct 1256 GCATTAAATCTCTCATATAGTTCCTTCCAC 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48721087926
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5