BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23570.2 Length=1067 Score E Sequences producing significant alignments: (Bits) Value Ahg921411 jgi|Araly1|921411|scaffold_102692.1 817 0.0 Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 472 3e-132 Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 307 1e-82 Ahg921422 jgi|Araly1|921422|scaffold_102703.1 148 6e-35 > Ahg921411 jgi|Araly1|921411|scaffold_102692.1 Length=922 Score = 817 bits (442), Expect = 0.0 Identities = 515/550 (94%), Gaps = 6/550 (1%) Strand=Plus/Plus Query 237 GGAAAGCAAATCAAGAAAGGTTTTAATGGAGGATGGACCGAGGCAGATCGCGAAGGTGAA 296 ||||| |||||| ||||||||| | |||||||||||||| |||||||||||||||||||| Sbjct 377 GGAAAACAAATCGAGAAAGGTTCTGATGGAGGATGGACCAAGGCAGATCGCGAAGGTGAA 436 Query 297 GAAAACCGTGGACTGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATAAGTCTAATTGT 356 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 437 GAAAACCGTGGACTGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATAAGTGTAATTGT 496 Query 357 CGATGAAAACAGAAAAGATCTTACAGCAAAATATAAGAAAAAGAAAATGATCTTGATGAA 416 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 497 CGATGAAAACAGAAAAGATCTTACTGCAAAATATAAGAAAAAGAAAATGATCTTAATGAA 556 Query 417 AGTTTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCTTGTGCAA 476 ||| ||||| |||||||||| |||||||||| | |||||||||||||||||||||||||| Sbjct 557 AGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATGTAGATTCAGAACGCTTGTGCAA 616 Query 477 TAACATGGAGCCGAAGAGTCCGGCAGAATACAAAAGATGTAGCGGTGGACAAGGAAGGAT 536 |||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| Sbjct 617 GAACATGGAGCCGAAGAGTCCGGAAGACTACAAAAGATGTAGCGGCGGACAAGGAAGGAT 676 Query 537 TGCATCAAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 TGCATCAAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 736 Query 597 ACTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGCGCTGAAAACACT 656 |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 737 ACTATCTTGGTACATTCGTGAGGTCACCATCAAGAACACCAAAACTGCGCTCAAAACACT 796 Query 657 TCAAACTTGGGGTATAAACCTTCGAAATCC-AGGTGCAGTGACTTCAACAGACAAATATG 715 ||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||| ||| Sbjct 797 TCAAACTTGGGGTATAACCCTTCGAAA-CCGAGGTGAAGTGACTTCAACAGACAAAGATG 855 Query 716 GAAACGTAACAATATCACCAAGaaaaaaaagaaa-aaCAACAAACATTGAAAACACTAGG 774 |||||||||||| ||||| |||||||||| || || || |||| | |||||||||||| Sbjct 856 GAAACGTAACAAAATCACGAAGAAAAAAATTAACCAATAA-AAAC-T-GAAAACACTAGG 912 Query 775 CTAAATGAAT 784 |||||||||| Sbjct 913 CTAAATGAAT 922 Score = 342 bits (185), Expect = 3e-93 Identities = 221/238 (93%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 1 ATGGTATTTACTGGATTTGGTGGCTGGGTCAGTCAAAACAATAAACAGCCTCGAAAGGCC 60 ||||||||||| ||||||||||||||||||| ||| |||||| |||||||||| |||||| Sbjct 21 ATGGTATTTACAGGATTTGGTGGCTGGGTCAATCAGAACAATGAACAGCCTCGTAAGGCC 80 Query 61 AAGCCCaaaaaaaCTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGGTGGATAATAAT 120 |||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 81 AAGCCCAAAATAACTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGG---ATACTAAT 137 Query 121 AATAACCATGATAAGATGAAGAAATATTATGACGAAGATGAGAGGAAGAAACAAGATCAA 180 || || ||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 138 GATGACTATGATAAGATGAAGAAATATTATGACGAAGAAGAGATGAAGAAACAAGATCAA 197 Query 181 GTTTGGATAGATGCAGAGAAGATGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGG 238 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 198 CTTTGGATAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGG 255 > Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 Length=678 Score = 472 bits (255), Expect = 3e-132 Identities = 532/664 (80%), Gaps = 26/664 (4%) Strand=Plus/Plus Query 4 GTATTTACTGGATTTGGTGGCTGGGTCAGTCAAAACAATAAACAGCCTCGAAAGGCCAAG 63 |||||| ||||||||||||||||| ||| ||| |||| | ||||||||| ||||| || Sbjct 7 GTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATTCAACAGCCTCCTAAGGCTGAG 66 Query 64 CCCaaaaaaaCTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGGTGGATAATAATAAT 123 ||| | | |||| |||||| ||||||| | || |||| | | |||| ||||||| Sbjct 67 TCCAGGAGATCTGAGAATGTTAAATCTAATTTAGTTTCAG--A-GAAAGATACTAATAAT 123 Query 124 AACCATGATAAGATGAAGAAATATTATGACGAAGATGAGAGGAAGAAACAAGATCAAGTT 183 | | ||| | | || ||||||| ||||| |||| ||||| ||| || || || Sbjct 124 ---GA-G-GAAG--G-ACTAA-ATTATGAAGAAGAGGAGATGAAGAGGCAACATGAACTT 174 Query 184 TGGATAGATGCAGAGAAGATGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGGAAAGC 243 |||| || ||| ||||||| |||||||||| ||||||| ||||| |||||||||| || | Sbjct 175 TGGAAAGCTGCGGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACC 234 Query 244 AAATCAAGAAAGGTTTT-AATGGAGGATGGACCGAGGCAGATCGCGAAG-GTGAAGAAAA 301 ||||||||||||||||| || | ||||||||||||||||||||| | || |||||||| Sbjct 235 AAATCAAGAAAGGTTTTGAA-GAAGGATGGACCGAGGCAGATCGTG-AGATTGAAGAAAG 292 Query 302 CCGTGGAC-TGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATA-AGTCTAATTGTCGA 359 | |||| | ||| | || ||| ||| |||| | | | || ||| | |||||||||||| Sbjct 293 CTGTGG-CTTGGGACTTTCTTTGGTGGTCTGGAGATTTTCCGATACA-TCTAATTGTCGA 350 Query 360 TGAAAACAGAAAAGATCTTACAGCAAAATATAAGAAAAAGAAAATGATCTTGATGAAAGT 419 || ||||| |||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 351 TGTAAACAAAAAAGATCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGAAAGT 410 Query 420 TTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCTTGTGCAATAA 479 ||||||||||| || | | | ||||||||||| |||||||||| ||||||||||| | Sbjct 411 TTTCGAAGGTAACTGGAAAATAGAGCCACTATACGTAGATTCAGTCCGCTTGTGCAAGCA 470 Query 480 CATGGAGCCGAAGAGTCCGGCA-GAATACAAAAGATGTAGCGGTGGACAAGGAAGGATTG 538 | |||||| ||||||| || |||||||||| |||||| || |||||||||||| ||| Sbjct 471 TAAGGAGCCTAAGAGTCTA-CAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGGTTG 529 Query 539 CATC-AAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCCA 597 |||| |||| | |||||| ||||||| ||| |||||||| |||||||||||||||| ||| Sbjct 530 CATCGAAAG-TAACAATGGACCAATATTTTCAGCCATATACTCCTTTTAATCTGCCACCA 588 Query 598 CTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGC-GCTGAAAACACT 656 | ||||||| |||||| | ||||||||| || |||||||||| | ||| |||| || Sbjct 589 ATTTCTTGGTTCATTCGTGATATCACCATCAGGACCACCAAAACT-CTGCTCAAAATGCT 647 Query 657 TCAA 660 |||| Sbjct 648 TCAA 651 > Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 Length=882 Score = 307 bits (166), Expect = 1e-82 Identities = 268/316 (85%), Gaps = 12/316 (4%) Strand=Plus/Plus Query 410 TGATGAAAGTTTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCT 469 |||||||||| ||||| |||||||||| ||||||||||||||| |||||||||| ||| | Sbjct 548 TGATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATTCAGTACGGT 607 Query 470 TGTGCAATAACATGGAGCCGAAGAGTCCGGCAGAATACA-AAAGATGTAGCGGTGGACAA 528 | ||||| |||| ||||||||||||| | || ||||| ||| |||||||||||||||| Sbjct 608 TATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAA-ATGTAGCGGTGGACAA 666 Query 529 GGAAGGATTGCATC-AAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAA 587 |||| ||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 667 GGAAAGATTGCATCGAAA-GTGACAATGGACCAATACTTTCAGCCATATCCTCCTTTTAA 725 Query 588 TCTGCCGCCACTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGCGCT 647 |||||||||||||||||||| |||||| | ||||||||||||| ||||||| || ||| Sbjct 726 TCTGCCGCCACTATCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAAAATGTGCT 785 Query 648 -GAAAACACTTCAAACTT-GGGGTATAAACCTTCGAAATCCAGGTGCAGTGACT-TCAAC 704 || | ||||||| ||| ||||| | | ||||||||||||||| | | | | ||||| Sbjct 786 AGACAG-ACTTCAA-CTTTGGGGTTTCAGTATTCGAAATCCAGGTGTAATCA-TGTCAAC 842 Query 705 -AGACAAATATGGAAA 719 | ||||| ||||||| Sbjct 843 CA-ACAAACATGGAAA 857 > Ahg921422 jgi|Araly1|921422|scaffold_102703.1 Length=808 Score = 148 bits (80), Expect = 6e-35 Identities = 180/226 (80%), Gaps = 16/226 (7%) Strand=Plus/Plus Query 421 TTCGAAGGTAGCTATAGAGTGGAGCCACTATAT-GTAGATTCAGAACGCTTGTGCAA-TA 478 ||||| ||||||| | |||||||||||| | | |||||||||||||||||||||| | Sbjct 546 TTCGAGGGTAGCTGGAAAGTGGAGCCACT-TTTCATAGATTCAGAACGCTTGTGCAAGCA 604 Query 479 ACATGGAGCCGAAGAGTCCG-GCAGAATACAAAAGATGTAGCGGTGGACAAGGAAGGATT 537 | || |||| |||||| || | ||| ||||||| |||||| || |||| |||||||||| Sbjct 605 A-ATTAAGCCCAAGAGT-CGAGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATT 662 Query 538 GCATCAAAGGTGACAATGAACCA-ATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 596 |||||||||||||||||| | || || |||| |||| | | |||| ||||||| || || Sbjct 663 GCATCAAAGGTGACAATGGAGCAGAT-CTTTCAGCCTTCTTTTCCTCTTAATCTTCCTCC 721 Query 597 ACTAT-CTTGG-TACATTCGAAAGG-TCACCATCAAGAAC-ACCAA 638 || | ||||| | ||| || || |||||||||| ||| ||||| Sbjct 722 -CTTTTCTTGGAT-CATCCGTG-GGATCACCATCAA-AACCACCAA 763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39724079514 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5