BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23570.2
Length=1067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921411 jgi|Araly1|921411|scaffold_102692.1 817 0.0
Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 472 3e-132
Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 307 1e-82
Ahg921422 jgi|Araly1|921422|scaffold_102703.1 148 6e-35
> Ahg921411 jgi|Araly1|921411|scaffold_102692.1
Length=922
Score = 817 bits (442), Expect = 0.0
Identities = 515/550 (94%), Gaps = 6/550 (1%)
Strand=Plus/Plus
Query 237 GGAAAGCAAATCAAGAAAGGTTTTAATGGAGGATGGACCGAGGCAGATCGCGAAGGTGAA 296
||||| |||||| ||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 377 GGAAAACAAATCGAGAAAGGTTCTGATGGAGGATGGACCAAGGCAGATCGCGAAGGTGAA 436
Query 297 GAAAACCGTGGACTGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATAAGTCTAATTGT 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 437 GAAAACCGTGGACTGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATAAGTGTAATTGT 496
Query 357 CGATGAAAACAGAAAAGATCTTACAGCAAAATATAAGAAAAAGAAAATGATCTTGATGAA 416
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 497 CGATGAAAACAGAAAAGATCTTACTGCAAAATATAAGAAAAAGAAAATGATCTTAATGAA 556
Query 417 AGTTTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCTTGTGCAA 476
||| ||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 557 AGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATGTAGATTCAGAACGCTTGTGCAA 616
Query 477 TAACATGGAGCCGAAGAGTCCGGCAGAATACAAAAGATGTAGCGGTGGACAAGGAAGGAT 536
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 617 GAACATGGAGCCGAAGAGTCCGGAAGACTACAAAAGATGTAGCGGCGGACAAGGAAGGAT 676
Query 537 TGCATCAAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGCATCAAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 736
Query 597 ACTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGCGCTGAAAACACT 656
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 737 ACTATCTTGGTACATTCGTGAGGTCACCATCAAGAACACCAAAACTGCGCTCAAAACACT 796
Query 657 TCAAACTTGGGGTATAAACCTTCGAAATCC-AGGTGCAGTGACTTCAACAGACAAATATG 715
||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||| |||
Sbjct 797 TCAAACTTGGGGTATAACCCTTCGAAA-CCGAGGTGAAGTGACTTCAACAGACAAAGATG 855
Query 716 GAAACGTAACAATATCACCAAGaaaaaaaagaaa-aaCAACAAACATTGAAAACACTAGG 774
|||||||||||| ||||| |||||||||| || || || |||| | ||||||||||||
Sbjct 856 GAAACGTAACAAAATCACGAAGAAAAAAATTAACCAATAA-AAAC-T-GAAAACACTAGG 912
Query 775 CTAAATGAAT 784
||||||||||
Sbjct 913 CTAAATGAAT 922
Score = 342 bits (185), Expect = 3e-93
Identities = 221/238 (93%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 1 ATGGTATTTACTGGATTTGGTGGCTGGGTCAGTCAAAACAATAAACAGCCTCGAAAGGCC 60
||||||||||| ||||||||||||||||||| ||| |||||| |||||||||| ||||||
Sbjct 21 ATGGTATTTACAGGATTTGGTGGCTGGGTCAATCAGAACAATGAACAGCCTCGTAAGGCC 80
Query 61 AAGCCCaaaaaaaCTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGGTGGATAATAAT 120
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 81 AAGCCCAAAATAACTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGG---ATACTAAT 137
Query 121 AATAACCATGATAAGATGAAGAAATATTATGACGAAGATGAGAGGAAGAAACAAGATCAA 180
|| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 138 GATGACTATGATAAGATGAAGAAATATTATGACGAAGAAGAGATGAAGAAACAAGATCAA 197
Query 181 GTTTGGATAGATGCAGAGAAGATGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGG 238
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 198 CTTTGGATAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGG 255
> Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006
Length=678
Score = 472 bits (255), Expect = 3e-132
Identities = 532/664 (80%), Gaps = 26/664 (4%)
Strand=Plus/Plus
Query 4 GTATTTACTGGATTTGGTGGCTGGGTCAGTCAAAACAATAAACAGCCTCGAAAGGCCAAG 63
|||||| ||||||||||||||||| ||| ||| |||| | ||||||||| ||||| ||
Sbjct 7 GTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATTCAACAGCCTCCTAAGGCTGAG 66
Query 64 CCCaaaaaaaCTGAAAATGTTGAATCTAAGTCAGAGTCAGAAATGGTGGATAATAATAAT 123
||| | | |||| |||||| ||||||| | || |||| | | |||| |||||||
Sbjct 67 TCCAGGAGATCTGAGAATGTTAAATCTAATTTAGTTTCAG--A-GAAAGATACTAATAAT 123
Query 124 AACCATGATAAGATGAAGAAATATTATGACGAAGATGAGAGGAAGAAACAAGATCAAGTT 183
| | ||| | | || ||||||| ||||| |||| ||||| ||| || || ||
Sbjct 124 ---GA-G-GAAG--G-ACTAA-ATTATGAAGAAGAGGAGATGAAGAGGCAACATGAACTT 174
Query 184 TGGATAGATGCAGAGAAGATGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGGAAAGC 243
|||| || ||| ||||||| |||||||||| ||||||| ||||| |||||||||| || |
Sbjct 175 TGGAAAGCTGCGGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACC 234
Query 244 AAATCAAGAAAGGTTTT-AATGGAGGATGGACCGAGGCAGATCGCGAAG-GTGAAGAAAA 301
||||||||||||||||| || | ||||||||||||||||||||| | || ||||||||
Sbjct 235 AAATCAAGAAAGGTTTTGAA-GAAGGATGGACCGAGGCAGATCGTG-AGATTGAAGAAAG 292
Query 302 CCGTGGAC-TGGAAATTCCTTGGGTCGTCTTTTGCTGTCCCCATA-AGTCTAATTGTCGA 359
| |||| | ||| | || ||| ||| |||| | | | || ||| | ||||||||||||
Sbjct 293 CTGTGG-CTTGGGACTTTCTTTGGTGGTCTGGAGATTTTCCGATACA-TCTAATTGTCGA 350
Query 360 TGAAAACAGAAAAGATCTTACAGCAAAATATAAGAAAAAGAAAATGATCTTGATGAAAGT 419
|| ||||| |||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 351 TGTAAACAAAAAAGATCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGAAAGT 410
Query 420 TTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCTTGTGCAATAA 479
||||||||||| || | | | ||||||||||| |||||||||| ||||||||||| |
Sbjct 411 TTTCGAAGGTAACTGGAAAATAGAGCCACTATACGTAGATTCAGTCCGCTTGTGCAAGCA 470
Query 480 CATGGAGCCGAAGAGTCCGGCA-GAATACAAAAGATGTAGCGGTGGACAAGGAAGGATTG 538
| |||||| ||||||| || |||||||||| |||||| || |||||||||||| |||
Sbjct 471 TAAGGAGCCTAAGAGTCTA-CAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGGTTG 529
Query 539 CATC-AAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCCA 597
|||| |||| | |||||| ||||||| ||| |||||||| |||||||||||||||| |||
Sbjct 530 CATCGAAAG-TAACAATGGACCAATATTTTCAGCCATATACTCCTTTTAATCTGCCACCA 588
Query 598 CTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGC-GCTGAAAACACT 656
| ||||||| |||||| | ||||||||| || |||||||||| | ||| |||| ||
Sbjct 589 ATTTCTTGGTTCATTCGTGATATCACCATCAGGACCACCAAAACT-CTGCTCAAAATGCT 647
Query 657 TCAA 660
||||
Sbjct 648 TCAA 651
> Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004
Length=882
Score = 307 bits (166), Expect = 1e-82
Identities = 268/316 (85%), Gaps = 12/316 (4%)
Strand=Plus/Plus
Query 410 TGATGAAAGTTTTCGAAGGTAGCTATAGAGTGGAGCCACTATATGTAGATTCAGAACGCT 469
|||||||||| ||||| |||||||||| ||||||||||||||| |||||||||| ||| |
Sbjct 548 TGATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATTCAGTACGGT 607
Query 470 TGTGCAATAACATGGAGCCGAAGAGTCCGGCAGAATACA-AAAGATGTAGCGGTGGACAA 528
| ||||| |||| ||||||||||||| | || ||||| ||| ||||||||||||||||
Sbjct 608 TATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAA-ATGTAGCGGTGGACAA 666
Query 529 GGAAGGATTGCATC-AAAGGTGACAATGAACCAATACTTTAAGCCATATCCTCCTTTTAA 587
|||| ||||||||| ||| ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 667 GGAAAGATTGCATCGAAA-GTGACAATGGACCAATACTTTCAGCCATATCCTCCTTTTAA 725
Query 588 TCTGCCGCCACTATCTTGGTACATTCGAAAGGTCACCATCAAGAACACCAAAACTGCGCT 647
|||||||||||||||||||| |||||| | ||||||||||||| ||||||| || |||
Sbjct 726 TCTGCCGCCACTATCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAAAATGTGCT 785
Query 648 -GAAAACACTTCAAACTT-GGGGTATAAACCTTCGAAATCCAGGTGCAGTGACT-TCAAC 704
|| | ||||||| ||| ||||| | | ||||||||||||||| | | | | |||||
Sbjct 786 AGACAG-ACTTCAA-CTTTGGGGTTTCAGTATTCGAAATCCAGGTGTAATCA-TGTCAAC 842
Query 705 -AGACAAATATGGAAA 719
| ||||| |||||||
Sbjct 843 CA-ACAAACATGGAAA 857
> Ahg921422 jgi|Araly1|921422|scaffold_102703.1
Length=808
Score = 148 bits (80), Expect = 6e-35
Identities = 180/226 (80%), Gaps = 16/226 (7%)
Strand=Plus/Plus
Query 421 TTCGAAGGTAGCTATAGAGTGGAGCCACTATAT-GTAGATTCAGAACGCTTGTGCAA-TA 478
||||| ||||||| | |||||||||||| | | |||||||||||||||||||||| |
Sbjct 546 TTCGAGGGTAGCTGGAAAGTGGAGCCACT-TTTCATAGATTCAGAACGCTTGTGCAAGCA 604
Query 479 ACATGGAGCCGAAGAGTCCG-GCAGAATACAAAAGATGTAGCGGTGGACAAGGAAGGATT 537
| || |||| |||||| || | ||| ||||||| |||||| || |||| ||||||||||
Sbjct 605 A-ATTAAGCCCAAGAGT-CGAGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATT 662
Query 538 GCATCAAAGGTGACAATGAACCA-ATACTTTAAGCCATATCCTCCTTTTAATCTGCCGCC 596
|||||||||||||||||| | || || |||| |||| | | |||| ||||||| || ||
Sbjct 663 GCATCAAAGGTGACAATGGAGCAGAT-CTTTCAGCCTTCTTTTCCTCTTAATCTTCCTCC 721
Query 597 ACTAT-CTTGG-TACATTCGAAAGG-TCACCATCAAGAAC-ACCAA 638
|| | ||||| | ||| || || |||||||||| ||| |||||
Sbjct 722 -CTTTTCTTGGAT-CATCCGTG-GGATCACCATCAA-AACCACCAA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39724079514
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5