BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23580.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 673 0.0
Ahg921418 jgi|Araly1|921418|scaffold_102699.1 508 2e-143
Ahg921413 jgi|Araly1|921413|scaffold_102694.1 436 1e-121
Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 416 1e-115
Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008 387 1e-106
> Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004
Length=882
Score = 673 bits (364), Expect = 0.0
Identities = 454/497 (91%), Gaps = 8/497 (2%)
Strand=Plus/Plus
Query 100 ATGGGTGTATTTCCTGCGTTTGGAGCATGGATCAATCAGAATTCTCAACAGCCTCTTGAG 159
|||||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGTGTATTTTCTGCATTTGGTGCAAGGATCAATCAGAACTCTCAACAGCCTCTTGAG 60
Query 160 GAAGATCCCAAGAGCTCTGAGCATGTTGAATCTAAGTCGGCATCAGAGATGGATAATGGT 219
| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 61 GCTGATCCCAAGAGCTCTGAAAATGTTGAATCTAAGTCGGTGTCAGAGATGGATAAT-G- 118
Query 220 CCTGCTAAGATGAAAAAATACTATGACGAAGATGAGTGGGAGAGGCAAGATAAACTTTGG 279
| ||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 119 ---G-TAAGATGAAGAGATATTATGACGAAGATGAGTGGGAGAGGCAAGATCAACTTTGG 174
Query 280 ACAGCTGCAGAGAAGAAGCATCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACA 339
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 175 ACAGCTGCAGAGAAGAAGCATCCATGGAAAGTTGCCCCTCCTAAGGTTAAGGTGACAACA 234
Query 340 AAAAAGGGTATATGCCATATGCACATAGAATTGACATTGGGGTTGCCTCCTGATGGAGTC 399
||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||
Sbjct 235 AAAAAGGGTATTTGCCATATACACATAGAATTGACATTGGGGTTGCATCCTGATGGTGTC 294
Query 400 TTCGAACTTTTCACTAATCCACATAACGGACCAAACACCGAACCACTTCTGAAAAGCAAA 459
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 295 TTCGAACTTTTCACTAATCCACACAACGGACCAAACACCGAACCACTTTTGAAAAGCAAA 354
Query 460 TCAAGAAAGGTTTTGAAGGACGATGGACCGAGGCAGATCGCGAAGGTG-AAGAAAGCTGT 518
||||||||||||||||| || ||||||||||| |||||||| |||||| || |||| | |
Sbjct 355 TCAAGAAAGGTTTTGAAAGAGGATGGACCGAGCCAGATCGCTAAGGTGGAA-AAAGTTTT 413
Query 519 GGCCTGGAACTTCAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGAAAA 578
||||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||
Sbjct 414 GGCCTGGAACTTCAGTGGGAGGTCTTTTTCCGTCCCCATAAGTCTAACTGTCGATGAAAA 473
Query 579 CAGAAGAGATCTTACAG 595
| ||| |||||||||||
Sbjct 474 CCGAAAAGATCTTACAG 490
Score = 486 bits (263), Expect = 1e-136
Identities = 316/342 (92%), Gaps = 2/342 (1%)
Strand=Plus/Plus
Query 617 TGATGTTCATGAAAGTATTCGAGGGTAGCTATAAAGTGGAGCCTGTATACGTAGATTCAG 676
||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 542 TGATGATGATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATTCAG 601
Query 677 TACGCTTATGCAAGAACAAGAAGCCGAAGAGTGTAGATGAATACAAG-AAATGTAGTGGC 735
|||| ||||||||||||||| |||||||||||||||| | |||| || |||||||| ||
Sbjct 602 TACGGTTATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATAC-AGAAAATGTAGCGGT 660
Query 736 GGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCT 795
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATACTTTCAGCCATATCCTCCT 720
Query 796 TTTAATCTACCGCCATTTTCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAGAGT 855
|||||||| |||||| | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 721 TTTAATCTGCCGCCACTATCTTGGTTCATTCGTGATATCACCATCAAGAATACCAAAAAT 780
Query 856 GTGCTAGAGAGACTTCAAAGTTGGAGTTTCAGTATTCGAAATCCGGGTGTAATCATGTCA 915
|||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||||||
Sbjct 781 GTGCTAGACAGACTTCAACTTTGGGGTTTCAGTATTCGAAATCCAGGTGTAATCATGTCA 840
Query 916 ACCAACAAACATGGAAAAACAGAAGTTTCTCCTAAACAGTAA 957
|||||||||||||||||||||||| ||||||||||||| |||
Sbjct 841 ACCAACAAACATGGAAAAACAGAAATTTCTCCTAAACATTAA 882
> Ahg921418 jgi|Araly1|921418|scaffold_102699.1
Length=819
Score = 508 bits (275), Expect = 2e-143
Identities = 618/773 (80%), Gaps = 66/773 (9%)
Strand=Plus/Plus
Query 81 AAAATTTGATAGAG-AAATAATG-GGTGTATTTCCTGCG-TTTGG-AGCATGGATCAATC 136
|||||||| || | ||| |||| || |||||| ||| | ||||| || ||||| ||||
Sbjct 12 AAAATTTG--AGGGCAAA-AATGAGG-GTATTTTCTG-GATTTGGTGGC-TGGATAAATC 65
Query 137 AGAA-TTCTCAACAGCCTCTTGAGGAAGA-TCCCAAGAGCTCTGAGCATGTTGAAT-CTA 193
|||| | |||| | |||| | ||| || | |||| || |||| | ||||| ||| |||
Sbjct 66 AGAACAT-TCAAGAACCTCCTAAGGCTGAGT-CCAAAAGATCTGTGGATGTT-AATACTA 122
Query 194 AGTCGGCATCAGAGATGGATAATGGTCCTGCT-AAGATGAAAAAATACTATGACGAAGAT 252
| || | ||||||| ||| | || || | |||| | | || |||||| ||||
Sbjct 123 ATTCAGTGTCAGAGAAAGAT-A--GTAATGATCAAGA--ACTACAT--TATGACAAAGAG 175
Query 253 GAG-TGGGAGAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGCATCCATGGAAAG 310
||| | | ||| ||| || ||||||||| || ||||||||||||||| |||||| | |
Sbjct 176 GAGAT-GAAGAAACAAGGA-CAACTTTGGATAGATGCAGAGAAGAAGCAGCCATGGTATG 233
Query 311 ATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTA-TATGCCATATGCACATAGAA 369
|||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||||
Sbjct 234 ATGCCCCTCCTAAGGTTAAGTTGACAACAAAAAAGGG-ACTATGCCATATGAACATAGAA 292
Query 370 TTGACATTGGGGTTGCCTCCTGATGGAGTCTTCGAACTTTTCACTAATCCACATAACGGA 429
|||||||||| | | |||||||||||||||||||||||||||||||||| || ||||
Sbjct 293 CTGACATTGGGCTGGTATCCTGATGGAGTCTTCGAACTTTTCACTAATCCAAATGACGG- 351
Query 430 CCAAACACCGAACCACTTCTGAAAAGCAAATCAAGAAAGGTTTTGAAGGACGATGGACCG 489
|| || | | |||| || | | || |||| | || || || | | |
Sbjct 352 CC---CA-C--TCTTCTTC-GATATG--AA-CAAG-CA-----TG--GG-CG-T-CAAC- 389
Query 490 AGGCAGATCGCGAAGGTGAAGAAAGCTGTGGCCTGGAACTTCAGTGGGAGGTCTATTGCT 549
| ||||| ||||||| || || ||||||| ||| ||||| | || ||||| |||
Sbjct 390 -TTCTGATCGTGAAGGTGGAGCAACCTGTGGCATGGGACTTCCTTTGGTGGTCTGGAGCT 448
Query 550 ATCCCCATAAG-TCTAATTGTCGATGAAAA-CAGAAGAGATCTTACAGCGAAATATAAAA 607
||||| || || |||||||| || ||||| || || |||||||||||||||||||||||
Sbjct 449 ATCCCGAT-AGAACTAATTGTGGAAGAAAACCA-AACAGATCTTACAGCGAAATATAAAA 506
Query 608 AAGAGAAAATGATGTTCATGAAAGTATTCGAGGGTAGCTATAAAGTGGAGCCTGTATACG 667
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 507 AAGAGAAAATGATGTTCATGAAAGTATTCGAAGGTAGCTATAAAGTGGAGCCACTATATG 566
Query 668 TAGATTCAGTACGCTTATGCAAGAACAA-GAAGCCGAAGAGT--GTAGATGAATACAAGA 724
|||||||||||||||| |||| | |||| || |||||||||| | | | |||||||| |
Sbjct 567 TAGATTCAGTACGCTTGTGCAGGCACAATGA-GCCGAAGAGTCCGCA-A-GAATACAA-A 622
Query 725 A-ATGTAGTGGCGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAATATTTTCAG 783
| |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 623 ATATGTAGTGGCGGACAAGGAAGGATTGCATCGAAAGTAACAATGGACCAATACTTTCAG 682
Query 784 CCATATCCTCCTTTTAATCTACCGCCATTTTCTTGGTTCATTCGTGATATCAC 836
|||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 683 CCATATCCTCCTTTTAATTTACCGCCATTTTCTTGGTTCATCCGTGATATCAC 735
> Ahg921413 jgi|Araly1|921413|scaffold_102694.1
Length=716
Score = 436 bits (236), Expect = 1e-121
Identities = 481/594 (81%), Gaps = 37/594 (6%)
Strand=Plus/Plus
Query 242 ATGACGAAGATGAGTGGGA--GAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGC 298
||| ||| |||||| | || |||| || || |||||||||| || ||||||||||||||
Sbjct 34 ATGTCGACGATGAG-GAGATGGAGG-AAGGA-AAACTTTGGAGAGATGCAGAGAAGAAGC 90
Query 299 ATCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTATATGCCATA 358
|||||||| |||||||||||||| || ||||||||||||||||||||| | |||||||
Sbjct 91 ATCCATGGTTTGATGCCCCTCCTAAAGTGAAGGTGACAACAAAAAAGGGTCTTTGCCATA 150
Query 359 TGCACATAGAATTGACATTGGGGTTGCCTCC-TGATGGAGTCTT-CGAACTTTTCACTAA 416
|| || || || ||||||| || |||||||| ||| ||| || || |||||||||||
Sbjct 151 TGTACGTAAAAATGACATTTGGATTGCCTCCAAGAT-CAGT-TTATGAGCTTTTCACTAA 208
Query 417 TCCACATAACGGACCA------A---AC-A--C--CGAACC-ACTTCT-GAAAAGCAAAT 460
|||| | ||| |||| | || | | | || |||||| | ||| ||||
Sbjct 209 TCCAAACAACTTACCACTCTTCAGTGACAAGTCTTGGCGCCAACTTCTGGTAAA-CAAAA 267
Query 461 CAAGAAAGGTTTTGAAGGA-CGATGGACCGAGGCAGATCGCGAAGGTGA-AGAAAGCTGT 518
||||||||||||||| || ||||| ||||||||||| | | |||| | |||| | |||
Sbjct 268 GAAGAAAGGTTTTGAA-GAGGGATGGGCCGAGGCAGATAGTGGAGGT-AGAGAAGGTTGT 325
Query 519 GGCCTGGAACTT-CAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGAAA 577
||||||| | || | || || ||||| | ||| || |||| |||||||| ||||||||
Sbjct 326 GGCCTGGGATTTCCTGT-GGTGGTCTGGAGGTATGCCTATAAATCTAATTGCCGATGAAA 384
Query 578 A-CAGAAGAGATCTTACAGCG-AAATATAAAAAAGAGAAAATGATGTTCATGAAAGTATT 635
| |||| ||||||||||| | |||||||| ||| | ||||||| |||||||||||| ||
Sbjct 385 ATGAGAA-AGATCTTACAG-GAAAATATAAGAAACAAAAAATGAAGTTCATGAAAGTGTT 442
Query 636 CGAGGGTAGCTATAAAGTGGAGCCTGTATACGTAGATTCAGTACGCTTATGCAAGAACAA 695
|||||||||||||||||||||||| | || |||||||| | | |||| |||||||||||
Sbjct 443 CGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAA 502
Query 696 GAAGCCGAAGAGTGTAGATGAATACAAGAAATGTAGTGGCGGACAAGGAAAGATTGCATC 755
| |||| |||||| ||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 503 GGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATC 562
Query 756 GAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCTTTTAATCTACCGCC 809
||||||||||||||||||||| |||||||||||||||| ||||||| | |||||
Sbjct 563 GAAAGTGACAATGGACCAATACTTTCAGCCATATCCTCTTTTTAATTTGCCGCC 616
> Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006
Length=678
Score = 416 bits (225), Expect = 1e-115
Identities = 343/400 (86%), Gaps = 8/400 (2%)
Strand=Plus/Plus
Query 456 CAAATCAAGAAAGGTTTTGAAGGACGATGGACCGAGGCAGATCGCGAAG-GTGAAGAAAG 514
|||||||||||||||||||||| | ||||||||||||||||||| | || |||||||||
Sbjct 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCGTG-AGATTGAAGAAAG 292
Query 515 CTGTGGCCTGGAAC-TTCAGTGGGAGGTCTATTGCTATCCCCATA-AGTCTAATTGTCGA 572
||||||| ||| || ||| | || ||||| | | | || ||| | ||||||||||||
Sbjct 293 CTGTGGCTTGGGACTTTC-TTTGGTGGTCTGGAGATTTTCCGATACA-TCTAATTGTCGA 350
Query 573 TGAAAACAGAAGAGATCTTACAGCGAAATATAAAAAAGAGAAAATGATGTTCATGAAAGT 632
|| ||||| || |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 351 TGTAAACAAAAAAGATCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGAAAGT 410
Query 633 ATTCGAGGGTAGCTATAAAGTGGAGCCTGTATACGTAGATTCAGTACGCTTATGCAAGAA 692
||||| |||| || ||| | ||||| |||||||||||||||| ||||| |||||| |
Sbjct 411 TTTCGAAGGTAACTGGAAAATAGAGCCACTATACGTAGATTCAGTCCGCTTGTGCAAGCA 470
Query 693 CAAGAAGCCGAAGAGTGTAGATGAATACAAGAA-ATGTAGTGGCGGACAAGGAAAGATTG 751
||| |||| |||||| || | |||||||| || |||||||||||||||||||| | |||
Sbjct 471 TAAGGAGCCTAAGAGTCTACAAGAATACAA-AACATGTAGTGGCGGACAAGGAAGGGTTG 529
Query 752 CATCGAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCTTTTAATCTACCGCCAT 811
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 530 CATCGAAAGTAACAATGGACCAATATTTTCAGCCATATACTCCTTTTAATCTGCCACCAA 589
Query 812 TTTCTTGGTTCATTCGTGATATCACCATCAAGAATACCAA 851
|||||||||||||||||||||||||||||| || |||||
Sbjct 590 TTTCTTGGTTCATTCGTGATATCACCATCAGGACCACCAA 629
> Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008
Length=822
Score = 387 bits (209), Expect = 1e-106
Identities = 584/756 (77%), Gaps = 62/756 (8%)
Strand=Plus/Plus
Query 127 TGGATCAATCAGAA--TTC-TCAACAGCCTCTTGAGGAAGA-TCCCAAGAGCTCTGAGCA 182
|||||||| ||||| | | ||||||||| || |||| || | ||||||| |||||| |
Sbjct 28 TGGATCAACCAGAACCTGCAACAACAGCCTGTTCAGGATGAGT-CCAAGAGATCTGAGAA 86
Query 183 TGTTGAATCTAAGTCGGCATCAGAGATGGATAATGGTCCTGCT-AAGATGAAAAAATACT 241
||| || ||||| || | || ||| || || | | || | || | | || || |
Sbjct 87 TGTCGACTCTAATTCAGTGTC--AGA--GA-AA-GATACTAATAAACA-GGAATTTTATT 139
Query 242 ATGACGAAGATGAGTG-GGAGAGGCAA-GATAAACTTTGGACAGCTGCAGAGAAGAAGCA 299
||||| ||| |||| | ||| |||| || |||||||||| |||||||||||||||| |
Sbjct 140 ATGACAAAGCTGAG-GCTAAGAAGCAAGGA-AAACTTTGGAGAGCTGCAGAGAAGAAGAA 197
Query 300 TCCATGGAAAGATGCCCCTCCTAAGGTTAAGGTGACAACAAAAAAGGGTATATGCCATAT 359
|||||| | ||||| ||| |||| || |||||||||||||| |||||| | ||||| ||
Sbjct 198 ACCATGGTATGATGCTCCTGCTAAAGTGAAGGTGACAACAAAGAAGGGTCTTTGCCACAT 257
Query 360 GCACATAGAATTGACATTGGGGTTGCCTCCTGATGGAGTCTTCGAACTT-TTCACTAATC 418
|||||||||||||||| | || ||||||||||| ||||||| || | || ||| ||||||
Sbjct 258 GCACATAGAATTGACAGTAGGATTGCCTCCTGAAGGAGTCTACG-ATTTGTTCGCTAATC 316
Query 419 C--AC-A---T--A----AC-GGA---CCAA--ACACCGAAC-C--ACTTCT-GAAAAGC 456
| || | | | | ||| || | || | | | |||| | ||||| |
Sbjct 317 CAAACGACTTTCCATTCTTCAGGATTGATAATGAGACTGGGCGCGAACTTTTGGAAAA-C 375
Query 457 AAATCAAGAAAGGTTTTGAAGGACGATGGACCGAGGCAGATCGCGAAGGTGAAGAAAGCT 516
||||||||||||||||||| | | ||||||||||||||||||| | || || ||||||||
Sbjct 376 AAATCAAGAAAGGTTTTGATGAAGGATGGACCGAGGCAGATCGTGCAGTTGGAGAAAGCT 435
Query 517 GTGGCCTGGAAC-TTCAGTGGGAGGTCTATTGCTATCCCCATAAGTCTAATTGTCGATGA 575
||| ||||| || ||| | | ||| | ||| | || | | ||||||||| |||||
Sbjct 436 GTGACCTGGGACTTTC-TTTTGTGGTGTGGAGCTTTTCCGTTTACTCTAATTGTTGATGA 494
Query 576 AAA-CAGAAGAGATCTTACAGCGAAATATAA-AAAAGAGAAAATGATGTTCATGAAAGTA 633
||| || || |||| ||| ||| |||||||| |||| ||||||||||||||||||||||
Sbjct 495 AAACCA-AAAAGATTTTAGAGCAAAATATAAGAAAA-AGAAAATGATGTTCATGAAAGTT 552
Query 634 TTCGAGGGTAGCTATAAAGTGGAG-C-CTGTATACGTAGATTCAGTACGCTTATGCAAGA 691
|| ||||||| | ||| | ||| | ||| ||||||||||||| |||||| ||||||
Sbjct 553 TTTGAGGGTAAATGGAAAATAGAGTCACTG--TACGTAGATTCAGAACGCTTGTGCAAGG 610
Query 692 ACAAGA-AGCCGAAGAGT-GTAGATGAATACAAGAA-ATGTAGTGGCGGACAAGG-AAAG 747
|| ||| ||||||||||| | ||| |||||||| || |||||||||||||||||| ||||
Sbjct 611 AC-AGAGAGCCGAAGAGTCG-AGAAGAATACAA-AAGATGTAGTGGCGGACAAGGAAAAG 667
Query 748 ATTGCATCGAAAGTGACAATGGACCAATATTTTCAGCCATATCCTCCTT-TTAATCTACC 806
|||||||||||||||||||||||||||| || || || ||| || || ||||| ||||
Sbjct 668 -TTGCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTC-TTCTTAATATACC 725
Query 807 GCCATTTTCTTGGTTCATTCGTGATATCACCATCAA 842
|| ||||||||| |||||||| |||||||||||
Sbjct 726 ACCGCTTTCTTGGTACATTCGTGGGATCACCATCAA 761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5