BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23590.1 Length=1093 Score E Sequences producing significant alignments: (Bits) Value Ahg921413 jgi|Araly1|921413|scaffold_102694.1 1022 0.0 Ahg921411 jgi|Araly1|921411|scaffold_102692.1 429 2e-119 Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 228 8e-59 > Ahg921413 jgi|Araly1|921413|scaffold_102694.1 Length=716 Score = 1022 bits (553), Expect = 0.0 Identities = 667/721 (93%), Gaps = 11/721 (2%) Strand=Plus/Plus Query 172 ATCTAAGTCAGTGTCAGAGATGAATACTAATAATGTCGACGATGAGGTGATGGAGCAAGG 231 |||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| |||| Sbjct 2 ATCTAAGTCAGTGTCAAATATGAATTCTAATAATGTCGACGATGAGGAGATGGAGGAAGG 61 Query 232 AAAACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAAGTCAA 291 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || Sbjct 62 AAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAGTGAA 121 Query 292 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCC 351 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 122 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGCCTCC 181 Query 352 ACGATCAGTCTT-CGAGCTTTTCACTAATCCAGACAACTTACCACTCGTCAGTGACAAGT 410 | ||||||| || |||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 182 AAGATCAGT-TTATGAGCTTTTCACTAATCCAAACAACTTACCACTCTTCAGTGACAAGT 240 Query 411 CTTGGCGCCAACTTCTGGTAAACaaaaaaaGGAAGGTTTTGAAGAGGGATGGACCAAGGC 470 ||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||| Sbjct 241 CTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGGATGGGCCGAGGC 300 Query 471 AGATAGTGGAGGTAGATAAAGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 530 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGATAGTGGAGGTAGAGAAGGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 360 Query 531 CGATAAATATAAATGCGGTTGAAAATGAGAAAGATCTTAGGGGAAAATATAAGAAACAGA 590 | |||||| ||| ||| | |||||||||||||||||||| ||||||||||||||||| | Sbjct 361 CTATAAATCTAATTGCCGATGAAAATGAGAAAGATCTTACAGGAAAATATAAGAAACAAA 420 Query 591 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 480 Query 651 TCGAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCG 710 ||| |||||||||| | |||||||||||||||||||||||||||||||||||||| | Sbjct 481 CCGAAAGCTTGTGCAAGAACAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTG 540 Query 711 GTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCT 770 |||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||| Sbjct 541 GTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCT 599 Query 771 ATTTTTAATTTGCCGCCGTTCTTGGTACATTCGTAGGACCACCATCAAGACCACCACGAC 830 |||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 600 CTTTTTAATTTGCCGCC---C-----ACATTCGTAGGACCACCATCAAGACCACCACGAC 651 Query 831 TCTGCTCAAAATGCTTCAAGATATGGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 890 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 652 TCTCCTCAAAATGCTTCAAGATATTGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 711 Query 891 T 891 | Sbjct 712 T 712 > Ahg921411 jgi|Araly1|921411|scaffold_102692.1 Length=922 Score = 429 bits (232), Expect = 2e-119 Identities = 504/630 (80%), Gaps = 39/630 (6%) Strand=Plus/Plus Query 234 AACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAA-GTCAAG 292 ||||||||| ||||||||||||||| |||||||| ||||||||||||| ||| || ||| Sbjct 196 AACTTTGGATAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCC-AAAGGTGAAG 254 Query 293 GTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCCA 352 |||||||||||||| ||||||||||||||| |||||||||||||| | ||||| |||||| Sbjct 255 GTGACAACAAAAAATGGTCTTTGCCATATGAACATAGAATTGACACTGGGATTTCCTCCA 314 Query 353 CGAT-CAGTCTTC-GAGCTTTTCACTAATCCAGAC-AACTTACCACTCGTCAGTGACAAG 409 ||| ||||||| || |||| ||| ||||| | ||| |||| | | | | Sbjct 315 -GATAAAGTCTTCGGA-TTTTTTACTGATCCA-TCTAACGGACCA-T--T--TTTTC--- 363 Query 410 TCTTGGCGCCAACTTCTGGTAAACaaaaaaaGGAAGGTTTTGA-AGAGGGATGGACCAAG 468 || | | || || ||||| ||||||| || |||||| ||| || |||||||||||| Sbjct 364 TC-T--C-CCCACCTCTGGAAAACAAATCGAGAAAGGTTCTGATGGA-GGATGGACCAAG 418 Query 469 GCAGATAGTGGAGGTAG-ATAAAGTTGTGGCCTGGGATTTCC-TGTGGTGGTCTGGAGGT 526 |||||| | | |||| | | ||| |||| |||| | |||| || ||| |||| | | Sbjct 419 GCAGATCGCGAAGGT-GAAGAAAACCGTGGACTGGAAATTCCTTG-GGTCGTCTTTTGCT 476 Query 527 ATGCCGATAAATATAAATG-CGGTTGAAAATGAG-AAAGATCTTAGGGGAAAATATAAGA 584 | || |||| | ||| || | | |||||| || |||||||||| | ||||||||||| Sbjct 477 GTCCCCATAAGTGTAATTGTC-GATGAAAA-CAGAAAAGATCTTACTGCAAAATATAAGA 534 Query 585 AACAGAAAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATG 644 || ||||||||| || |||||||||||||||||||||||||||||||||||| | |||| Sbjct 535 AAAAGAAAATGATCTTAATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATG 594 Query 645 TAGATTTC-GAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAA 703 |||||| | || ||||||||||| | | |||||| |||||||| ||||| ||||||| | Sbjct 595 TAGATT-CAGAACGCTTGTGCAAGAACATGGAGCCGAAGAGTCCGGAAGACTACAAAAGA 653 Query 704 TGTAGCGGTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCC 763 |||||||| || ||||||| |||||||||||| ||||||||| ||||| || ||| |||| Sbjct 654 TGTAGCGGCGGACAAGGAAGGATTGCATCAAAGGTGACAATGAACCAA-TACTTTAAGCC 712 Query 764 ATATCCTATTTTTAATTTGCCGCCG-T-TCTTGGTACATTCGT-AGGACCACCATCAAGA 820 ||||||| ||||||| ||||||| | ||||||||||||||| ||| | |||||||||| Sbjct 713 ATATCCTCCTTTTAATCTGCCGCCACTATCTTGGTACATTCGTGAGGTC-ACCATCAAGA 771 Query 821 CCACCACGACT-CTGCTCAAAATGCTTCAA 849 ||||| ||| | |||||||| |||||| Sbjct 772 ACACCAAAACTGC-GCTCAAAACACTTCAA 800 > Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 Length=882 Score = 228 bits (123), Expect = 8e-59 Identities = 192/224 (86%), Gaps = 9/224 (4%) Strand=Plus/Plus Query 602 ATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTTC-G-AGCGCT 659 |||||||||||||||||||||||||||||||||||| | || ||||||| | | | || | Sbjct 550 ATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATT-CAGTA-CGGT 607 Query 660 TGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCGGTGGGCAAG 719 | ||||| | |||||||| |||||| ||||| ||||| ||||||||||||||| |||| Sbjct 608 TATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAAATGTAGCGGTGGACAAG 667 Query 720 GAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCTATTTTTAAT 779 ||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| Sbjct 668 GAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCTCCTTTTAAT 726 Query 780 TTGCCGCCG-T-TCTTGGTACATTCGT-AGGACCACCATCAAGA 820 ||||||| | ||||||| ||||||| | | ||||||||||| Sbjct 727 CTGCCGCCACTATCTTGGTTCATTCGTGAT-ATCACCATCAAGA 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40715275356 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5