BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23590.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921413 jgi|Araly1|921413|scaffold_102694.1 1022 0.0
Ahg921411 jgi|Araly1|921411|scaffold_102692.1 429 2e-119
Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 228 8e-59
> Ahg921413 jgi|Araly1|921413|scaffold_102694.1
Length=716
Score = 1022 bits (553), Expect = 0.0
Identities = 667/721 (93%), Gaps = 11/721 (2%)
Strand=Plus/Plus
Query 172 ATCTAAGTCAGTGTCAGAGATGAATACTAATAATGTCGACGATGAGGTGATGGAGCAAGG 231
|||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 2 ATCTAAGTCAGTGTCAAATATGAATTCTAATAATGTCGACGATGAGGAGATGGAGGAAGG 61
Query 232 AAAACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAAGTCAA 291
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||
Sbjct 62 AAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAGTGAA 121
Query 292 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCC 351
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 122 GGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGCCTCC 181
Query 352 ACGATCAGTCTT-CGAGCTTTTCACTAATCCAGACAACTTACCACTCGTCAGTGACAAGT 410
| ||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 182 AAGATCAGT-TTATGAGCTTTTCACTAATCCAAACAACTTACCACTCTTCAGTGACAAGT 240
Query 411 CTTGGCGCCAACTTCTGGTAAACaaaaaaaGGAAGGTTTTGAAGAGGGATGGACCAAGGC 470
||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct 241 CTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGGATGGGCCGAGGC 300
Query 471 AGATAGTGGAGGTAGATAAAGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 530
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGATAGTGGAGGTAGAGAAGGTTGTGGCCTGGGATTTCCTGTGGTGGTCTGGAGGTATGC 360
Query 531 CGATAAATATAAATGCGGTTGAAAATGAGAAAGATCTTAGGGGAAAATATAAGAAACAGA 590
| |||||| ||| ||| | |||||||||||||||||||| ||||||||||||||||| |
Sbjct 361 CTATAAATCTAATTGCCGATGAAAATGAGAAAGATCTTACAGGAAAATATAAGAAACAAA 420
Query 591 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATT 480
Query 651 TCGAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCG 710
||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct 481 CCGAAAGCTTGTGCAAGAACAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGTG 540
Query 711 GTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCT 770
|||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||||
Sbjct 541 GTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCT 599
Query 771 ATTTTTAATTTGCCGCCGTTCTTGGTACATTCGTAGGACCACCATCAAGACCACCACGAC 830
|||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 600 CTTTTTAATTTGCCGCC---C-----ACATTCGTAGGACCACCATCAAGACCACCACGAC 651
Query 831 TCTGCTCAAAATGCTTCAAGATATGGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 890
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 652 TCTCCTCAAAATGCTTCAAGATATTGGTGCCAAGATGCGAGTAGACCCGTACGAAAGTTC 711
Query 891 T 891
|
Sbjct 712 T 712
> Ahg921411 jgi|Araly1|921411|scaffold_102692.1
Length=922
Score = 429 bits (232), Expect = 2e-119
Identities = 504/630 (80%), Gaps = 39/630 (6%)
Strand=Plus/Plus
Query 234 AACTTTGGAGAGATGCAGAGAAGAAATATCCATGGTATGATGCCCCTCCTAAA-GTCAAG 292
||||||||| ||||||||||||||| |||||||| ||||||||||||| ||| || |||
Sbjct 196 AACTTTGGATAGATGCAGAGAAGAAGCATCCATGGAATGATGCCCCTCC-AAAGGTGAAG 254
Query 293 GTGACAACAAAAAAGGGTCTTTGCCATATGTACATAGAATTGACATTTGGATTGCCTCCA 352
|||||||||||||| ||||||||||||||| |||||||||||||| | ||||| ||||||
Sbjct 255 GTGACAACAAAAAATGGTCTTTGCCATATGAACATAGAATTGACACTGGGATTTCCTCCA 314
Query 353 CGAT-CAGTCTTC-GAGCTTTTCACTAATCCAGAC-AACTTACCACTCGTCAGTGACAAG 409
||| ||||||| || |||| ||| ||||| | ||| |||| | | | |
Sbjct 315 -GATAAAGTCTTCGGA-TTTTTTACTGATCCA-TCTAACGGACCA-T--T--TTTTC--- 363
Query 410 TCTTGGCGCCAACTTCTGGTAAACaaaaaaaGGAAGGTTTTGA-AGAGGGATGGACCAAG 468
|| | | || || ||||| ||||||| || |||||| ||| || ||||||||||||
Sbjct 364 TC-T--C-CCCACCTCTGGAAAACAAATCGAGAAAGGTTCTGATGGA-GGATGGACCAAG 418
Query 469 GCAGATAGTGGAGGTAG-ATAAAGTTGTGGCCTGGGATTTCC-TGTGGTGGTCTGGAGGT 526
|||||| | | |||| | | ||| |||| |||| | |||| || ||| |||| | |
Sbjct 419 GCAGATCGCGAAGGT-GAAGAAAACCGTGGACTGGAAATTCCTTG-GGTCGTCTTTTGCT 476
Query 527 ATGCCGATAAATATAAATG-CGGTTGAAAATGAG-AAAGATCTTAGGGGAAAATATAAGA 584
| || |||| | ||| || | | |||||| || |||||||||| | |||||||||||
Sbjct 477 GTCCCCATAAGTGTAATTGTC-GATGAAAA-CAGAAAAGATCTTACTGCAAAATATAAGA 534
Query 585 AACAGAAAATGAAGTTCATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATG 644
|| ||||||||| || |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 535 AAAAGAAAATGATCTTAATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATG 594
Query 645 TAGATTTC-GAGCGCTTGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAA 703
|||||| | || ||||||||||| | | |||||| |||||||| ||||| ||||||| |
Sbjct 595 TAGATT-CAGAACGCTTGTGCAAGAACATGGAGCCGAAGAGTCCGGAAGACTACAAAAGA 653
Query 704 TGTAGCGGTGGGCAAGGAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCC 763
|||||||| || ||||||| |||||||||||| ||||||||| ||||| || ||| ||||
Sbjct 654 TGTAGCGGCGGACAAGGAAGGATTGCATCAAAGGTGACAATGAACCAA-TACTTTAAGCC 712
Query 764 ATATCCTATTTTTAATTTGCCGCCG-T-TCTTGGTACATTCGT-AGGACCACCATCAAGA 820
||||||| ||||||| ||||||| | ||||||||||||||| ||| | ||||||||||
Sbjct 713 ATATCCTCCTTTTAATCTGCCGCCACTATCTTGGTACATTCGTGAGGTC-ACCATCAAGA 771
Query 821 CCACCACGACT-CTGCTCAAAATGCTTCAA 849
||||| ||| | |||||||| ||||||
Sbjct 772 ACACCAAAACTGC-GCTCAAAACACTTCAA 800
> Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004
Length=882
Score = 228 bits (123), Expect = 8e-59
Identities = 192/224 (86%), Gaps = 9/224 (4%)
Strand=Plus/Plus
Query 602 ATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAATTTATGTAGATTTC-G-AGCGCT 659
|||||||||||||||||||||||||||||||||||| | || ||||||| | | | || |
Sbjct 550 ATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCACTATACGTAGATT-CAGTA-CGGT 607
Query 660 TGTGCAATCAGAAGGAGCCAAAGAGTCCAGAAGAATACAAAAAATGTAGCGGTGGGCAAG 719
| ||||| | |||||||| |||||| ||||| ||||| ||||||||||||||| ||||
Sbjct 608 TATGCAAGAACAAGGAGCCGAAGAGTGTAGAAGTATACAGAAAATGTAGCGGTGGACAAG 667
Query 720 GAAAGATTGCATCAAAAGTGACAATGGACCAAATATTTTCAGCCATATCCTATTTTTAAT 779
||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 668 GAAAGATTGCATCGAAAGTGACAATGGACCAA-TACTTTCAGCCATATCCTCCTTTTAAT 726
Query 780 TTGCCGCCG-T-TCTTGGTACATTCGT-AGGACCACCATCAAGA 820
||||||| | ||||||| ||||||| | | |||||||||||
Sbjct 727 CTGCCGCCACTATCTTGGTTCATTCGTGAT-ATCACCATCAAGA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5