BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23610.1
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921414 jgi|Araly1|921414|scaffold_102695.1 422 2e-117
Ahg900578 jgi|Araly1|900578|Al_scaffold_0004_1228 291 6e-78
Ahg921417 jgi|Araly1|921417|scaffold_102698.1 268 3e-71
Ahg921422 jgi|Araly1|921422|scaffold_102703.1 198 4e-50
Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 156 2e-37
> Ahg921414 jgi|Araly1|921414|scaffold_102695.1
Length=301
Score = 422 bits (228), Expect = 2e-117
Identities = 272/293 (93%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 305 ATGAAAGAGAAAATGAAGTTCATGAAAGTGTTTGAGGGTAGCTGGAAAGTCGAGCCACTA 364
|||||| |||||||||||| ||||||||| || |||||||| |||||||| |||||||||
Sbjct 9 ATGAAAAAGAAAATGAAGTGCATGAAAGTATTCGAGGGTAGTTGGAAAGTGGAGCCACTA 68
Query 365 TACGTAGATCAGGAACGCTTTTGCAGGTCTAGGTCGGTGAATAGTCAAGAAGAGTACAAA 424
|||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 69 TACGTAGATCAGGAGCGCTTTTGCAAGTCTAGATCGGTGAATAGTCAAGAAGAGTACAAA 128
Query 425 AAATGTAGCGGCGGACGAGGAAGAATTGCATCGATGGTGACAATGGAGCTTATCTTTTAG 484
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 129 AAATGTAGCGGCGGACGAGGAAGAATTGCATCAAAGGTGACAATGGAGCTTATCTTCCAG 188
Query 485 CCTTCTACCCTTCTTAATCTGCCACCGGTTTCTTGGATCATCCGTGG----GATCACCAT 540
|||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 189 CCTTCTTCTCTTCTTAATCTGCCACCGGTTTCTTGGATTATCCGTGGTATATATCACCAT 248
Query 541 CAAAATCACCAAAATGTTGCTAGAAGATCTTAGAAAATATGTTATCATGATCC 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CAAAATCACCAAAATGTTGCTAGAAGATCTTAGAAAATATGTTATCATGATCC 301
> Ahg900578 jgi|Araly1|900578|Al_scaffold_0004_1228
Length=879
Score = 291 bits (157), Expect = 6e-78
Identities = 254/300 (85%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 307 GAAAGAGAAAATGAAGTTCATGAAAGTGTTTGAGGGTAGCTGGAAAGTCGAGCCACTATA 366
|||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 570 GAAAAAGAAAATGATGTACATGAAAGTGTTTGAGGGTAGCTGGAAAGTGGAGCCACTATA 629
Query 367 CGTAGATCAGGAACGCTTT-TGCAGGTCTAGGTCG-GTGAATAGTCAAGAAGAGTACAAA 424
|| |||||||||||| ||| |||| |||||||||| | || || | |||||| ||||||
Sbjct 630 CGCAGATCAGGAACG-TTTATGCAAGTCTAGGTCGCG-GATTAATGGAGAAGAATACAAA 687
Query 425 AAATGTAGCGGCGGACGAGGAAGAATTGCATCGATGGTGACAATGGAGCTTATCTTTTAG 484
|||||||| |||||| |||||| |||| ||| | ||||||||||||| |||||| ||
Sbjct 688 AAATGTAGTGGCGGAAAAGGAAGGATTGGATCAAAAGTGACAATGGAGCAGATCTTTCAG 747
Query 485 CCTTCTACCCTTCTTAATCTGCCACCGGTTTCTTGGATCATCCGTGGGATCACCATCAAA 544
|||| | | ||||||||| |||||||| |||||||| ||||||||| ||||||||| |||
Sbjct 748 CCTTGTTCTCTTCTTAATGTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATAAAA 807
Query 545 ATCAC-CAA-AATGTTGCTAGAAGATCTTAGAAAATATGTTATC-ATGATCCACAAAAGT 601
| || ||| ||| ||||| |||||||||||| ||| ||||||| | || |||||||||
Sbjct 808 A-CATTCAAGAAT-TTGCTCGAAGATCTTAGACAATTTGTTATCGAC-ATGCACAAAAGT 864
> Ahg921417 jgi|Araly1|921417|scaffold_102698.1
Length=610
Score = 268 bits (145), Expect = 3e-71
Identities = 198/222 (89%), Gaps = 10/222 (5%)
Strand=Plus/Plus
Query 81 ACTTAATATATCAAAGAGAATTATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCA 140
|||||| || |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ACTTAAAATTTCAAAGAGAA--ATGCGTGTATTTCCTGGATTTGGTGGCTGGATCAATCA 58
Query 141 GAA-TATTCAACAACGTCCTGAGGCTGA-ATCTGGGAGATCTGA-GAATGTTAAATCTAG 197
||| | ||||| | |||||||||||||| | |||||||||| || || |||||||||||
Sbjct 59 GAACT-TTCAAGAGCGTCCTGAGGCTGACA-CTGGGAGATCCGATGA-TGTTAAATCTAA 115
Query 198 TCCAGTGTCAGAGAAAGACACTAATCTAAAACCTTGGTATGATGAACCTGGTAAGACTAC 257
| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 116 TTCAGTGTCAGAGAAAGATACTAATCTAAAACCATGGTATGATGAACCTGGTAAGACGGC 175
Query 258 AGCTATGGAACCTGGGGATGTAA-AGTCTAAGCCACTGCATG 298
||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 176 AGCTATGGAACCTGGGGATGTTAGA-TCTAAGCCATTGCATG 216
> Ahg921422 jgi|Araly1|921422|scaffold_102703.1
Length=808
Score = 198 bits (107), Expect = 4e-50
Identities = 185/222 (83%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 338 GAGGGTAGCTGGAAAGTCGAGCCACTATACGTAGA-TCAGGAACGCTTTTGCAGGTCTAG 396
||||||||||||||||| |||||||| | | |||| ||| |||||||| |||| | | |
Sbjct 549 GAGGGTAGCTGGAAAGTGGAGCCACTTTTCATAGATTCA-GAACGCTTGTGCAAG-CAAA 606
Query 397 GT-CGGTGAATAGTCAAGAAGAGTACAAAAAATGTAGCGGCGGACGAGGAAGAATTGCAT 455
| | || |||| ||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 607 TTAAGCCCAAGAGTCGAGAAGAGTACAAAAAATGTAGTGGGGGACGAGGAAGGATTGCAT 666
Query 456 CGATGGTGACAATGGAGCTTATCTTTTAGCCTTC-TACCCTTCTTAATCTGCCACCGGTT 514
| | |||||||||||||| |||||| ||||||| | || ||||||||| || || ||
Sbjct 667 CAAAGGTGACAATGGAGCAGATCTTTCAGCCTTCTTTTCC-TCTTAATCTTCCTCCCTTT 725
Query 515 TCTTGGATCATCCGTGGGATCACCATCAAAATCACCAA-AAT 555
||||||||||||||||||||||||||||||| |||||| |||
Sbjct 726 TCTTGGATCATCCGTGGGATCACCATCAAAACCACCAAGAAT 767
> Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006
Length=678
Score = 156 bits (84), Expect = 2e-37
Identities = 108/120 (90%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 103 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAATATTCAACAACGTCCTGAG 162
||||||||||||||||||||||||||||||||||||||||| |||||||| | |||| ||
Sbjct 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATTCAACAGCCTCCTAAG 60
Query 163 GCTGAATCTGGGAGATCTGAGAATGTTAAATCTAGTCCAGTGTCAGAGAAAGACACTAAT 222
||||| || |||||||||||||||||||||||| | ||| ||||||||||| ||||||
Sbjct 61 GCTGAGTCCAGGAGATCTGAGAATGTTAAATCTAATTTAGTTTCAGAGAAAGATACTAAT 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24474912714
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5