BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23640.1 Length=1275 Score E Sequences producing significant alignments: (Bits) Value Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167 1238 0.0 Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 734 0.0 Ahg921417 jgi|Araly1|921417|scaffold_102698.1 235 6e-61 Ahg921415 jgi|Araly1|921415|scaffold_102696.1 231 7e-60 Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008 180 3e-44 > Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167 Length=795 Score = 1238 bits (670), Expect = 0.0 Identities = 744/780 (95%), Gaps = 4/780 (1%) Strand=Plus/Plus Query 498 ATTTAGTGGGTCGATCAATCCTCATGTTGAAGAGCCTCATGAGGTCGAGTCCAAGAGCCC 557 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 18 ATTTAGTGGATCGATCAATCCTCATGTTGAAGAGCCGCATGAGGTCGAGTCCAAGAACCC 77 Query 558 TGCATCTAATTCTGTGTGGGCGGTAGATCCTAAATATTATGACTTAGCTGAGGTAAAGAA 617 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 78 CGCATCTAATTCTGTGTGGGCGGTAGACCCTAAATATTATGACTTAGCTGAGGTAAAGAA 137 Query 618 GGAATCAAGACTTTGGAGAGCTGCTGAGAAAAAACATCCATGGTATGATGCTCCAGCTAA 677 |||||||| ||||||||||||||| ||||| || ||||||||||||||||| |||||||| Sbjct 138 GGAATCAAAACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAA 197 Query 678 GGTGAAGGTGACAAC-AAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAAATTGGGAT 736 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 198 GGTGAAGGTGACAACAAAAAAAG-GTCTTTGCCATTTGAACATAGAATTCAAATTGGGAT 256 Query 737 TGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAAACAACTTTCCTTTCTTCAAAG 796 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 257 TGCCTCCTGAAGCAGTCTACGAGATGTTCACTAATCCAAACAACTTTCCTTTCTTCAAAG 316 Query 797 AGGATAAGGCCGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATG 856 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 AGGACAAGGACGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATG 376 Query 857 GACCAAGGCAGACCACGGAGGTGGAAAAAGCTTTGTCCTGGAACTTTCTTGGGTGTTCAG 916 |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 377 GACCGAGGCAGACCACAGAGGTGGAAAAAGCTTTGTCCTGGAACTTTCTTGGGTGTTCTG 436 Query 917 TAGATATCCCAATACATCTTATAATTCACGAAAACCATAAGAATCTAACAGCAAAATATA 976 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 437 GAGATATCCCAATACATCTTATAATCCACGAAAACCATAAGAATCTAACTGCAAAATATA 496 Query 977 CGACAAAGAAAATGATGTTAATGAAAGTGTTCAAGGGTAGCTGGAAAGTTGAGCCAGATT 1036 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | Sbjct 497 CGACAAAGAAAATGATTTTAATGAAAGTGTTCGAGGGTAGCTGGAAAGTTGAGCCAGACT 556 Query 1037 ACGTAGATCAGGAACGCTTGTGCAAGTCAAGGTCGCCAAAAAGTCGAGAAGAATACAAAA 1096 |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| Sbjct 557 ACGTAGATCAGGAACGCTTGTGCAAGCCAAGGTTGCCAAAAAGTCGAAAAGAATACAAAA 616 Query 1097 TATGTAGCGGTGGACAAGGAAAAGTTGGGTCAAAAGTTACAATGGAGCAGATTTTTGAGC 1156 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| Sbjct 617 TATGTAGCGGTGGACAAGGAAAAGTTGGGTCGAAAGTTTCAATGGAGCAGATTTTTCAGC 676 Query 1157 CTTCTTCTCTTCTTAATCGACCACCGGTTTCTTGGATCATTCGTGGGATCACCATCAGAA 1216 |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| Sbjct 677 CTTCTTCTCTTCTTAATCTACCACCGGTTTCATGGATCATTTGTGGGATCACCATCAGAA 736 Query 1217 CCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCGGGTACCACTTTACGAGAA-GTTTGA 1275 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| Sbjct 737 CCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCGGGTACCTCTTTACG-GAAAGTTTGA 795 Score = 134 bits (72), Expect = 2e-30 Identities = 180/230 (78%), Gaps = 15/230 (7%) Strand=Plus/Plus Query 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGT-GAGATTGAAGAAAG 292 |||||||| |||||||||||||||||||||||||||||||| ||| | ||| |||| Sbjct 348 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGTGGAA-AAAG 406 Query 293 CTGTGGCATGGGACTTTCTATGG-TGGTCTGGAGAATTTCCGA-TAAATCTAATTGTCGA 350 || || | ||| ||||||| ||| || |||||||| | ||| | || |||| || || | Sbjct 407 CTTTGTCCTGGAACTTTCT-TGGGTGTTCTGGAGA-TATCCCAATACATCTTATAATCCA 464 Query 351 TGTaaacaaaaaaga-tcttacagcaaaatataaaa-aagagaaaaTGATGTTCATGAAA 408 | |||| | || || ||| || |||||||||| | || |||||||||| || |||||| Sbjct 465 CGAAAACCATAA-GAATCTAACTGCAAAATATACGACAA-AGAAAATGATTTTAATGAAA 522 Query 409 GTTTTCGAAGGTAACTGGAA-GATAGAGCCACTA-TATGTAGATTCAGGA 456 || ||||| |||| |||||| | | |||||| | || |||||| ||||| Sbjct 523 GTGTTCGAGGGTAGCTGGAAAGTT-GAGCCAG-ACTACGTAGAT-CAGGA 569 Score = 89.8 bits (48), Expect = 5e-17 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 170 AACTATGGAAAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGG 229 |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 146 AACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAAGGTGAAGG 205 > Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 Length=678 Score = 734 bits (397), Expect = 0.0 Identities = 435/454 (96%), Gaps = 0/454 (0%) Strand=Plus/Plus Query 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATCCAACAGCCTCCTAAG 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATTCAACAGCCTCCTAAG 60 Query 61 GCTGAGTCCAGGAGATCTAAGAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAAT 120 |||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| Sbjct 61 GCTGAGTCCAGGAGATCTGAGAATGTTAAATCTAATTTAGTTTCAGAGAAAGATACTAAT 120 Query 121 AATGAGGAAGGACTAAATTATGACGAAGAGGAAACCAAGAGGCAAAATGAACTATGGAAA 180 ||||||||||||||||||||||| |||||||| | ||||||||| ||||||| |||||| Sbjct 121 AATGAGGAAGGACTAAATTATGAAGAAGAGGAGATGAAGAGGCAACATGAACTTTGGAAA 180 Query 181 GCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCA 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCTGCGGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCA 240 Query 241 AGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGTGAGATTGAAGAAAGCTGTGGCA 300 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 AGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCGTGAGATTGAAGAAAGCTGTGGCT 300 Query 301 TGGGACTTTCTATGGTGGTCTGGAGAATTTCCGATAAATCTAATTGTCGATGTaaacaaa 360 ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 301 TGGGACTTTCTTTGGTGGTCTGGAGATTTTCCGATACATCTAATTGTCGATGTAAACAAA 360 Query 361 aaagatcttacagcaaaatataaaaaagagaaaaTGATGTTCATGAAAGTTTTCGAAGGT 420 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 AAAGATCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGAAAGTTTTCGAAGGT 420 Query 421 AACTGGAAGATAGAGCCACTATATGTAGATTCAG 454 |||||||| |||||||||||||| |||||||||| Sbjct 421 AACTGGAAAATAGAGCCACTATACGTAGATTCAG 454 > Ahg921417 jgi|Araly1|921417|scaffold_102698.1 Length=610 Score = 235 bits (127), Expect = 6e-61 Identities = 319/407 (78%), Gaps = 32/407 (8%) Strand=Plus/Plus Query 577 GCGGTAGATCCTAAATATTAT-GACTTAGCTGAGGTAAAGAAGG-AATCAAG-ACTTTGG 633 ||||||||| ||||||||| | ||| || ||| | ||| ||| |||| || ||||||| Sbjct 216 GCGGTAGATACTAAATATT-TCGACGTAAATGATATGAAG-AGGCAATC-AGAACTTTGG 272 Query 634 AGAGCTGCTGAGAA-AA-AA-CATCCATGGTATGATGCTCCAGCTAAGGTGAAGGTGACA 690 | || ||||| || || ||||| |||||| |||||| || |||||| |||||| | Sbjct 273 -CA--TGGAGAGAAGAAGAAGCATCCGTGGTATCCTGCTCCTGCCAAGGTGGAGGTGAAA 329 Query 691 ACAAAAAAGT-GTCTTTGCCATTTGAACATAGAATTCA-AATTGGGATTGCCTCCTGAAG 748 |||||||| | ||||||||||| ||||||||||||||| |||| ||| | |||| || Sbjct 330 ACAAAAAA-TGGTCTTTGCCATATGAACATAGAATTCACAATT-GGAGTAATTCCTCCAG 387 Query 749 CAGTCTATGAGATGTTCACTAATCCAA-ACAAC-TTTCCTTTCTTCA-AAGAGGA-TAAG 804 |||||||||||||| |||||||||||| | ||| | | | ||||||| | |||| || Sbjct 388 CAGTCTATGAGATGCTCACTAATCCAAGA-AACATAT-CATTCTTCATTA-AGGACGAAC 444 Query 805 GCCGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGG 864 | |||| |||||| ||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 445 G-TTGGCGACAACGTCTGGAAAACAAATCAACAAAGGTTTTGAAGAAAGATGGACCGAGG 503 Query 865 CAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC-TTGGGTGTTCAGTAGATA 922 |||| |||||| ||| ||||| |||||| ||||| || | || ||| || | || || Sbjct 504 CAGATCACGGATGTGAGAAAA-GCTTTGAGATGGAAGTT-CATTATGTGGTCTGGAGCTA 561 Query 923 TCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATCTAACAG 967 |||| || ||||| || || | | |||| ||| || ||||| |||| Sbjct 562 TCCCTATTCATCTAATTAT-CGATTAAAATCATCAA-AATCTTACAG 606 Score = 145 bits (78), Expect = 1e-33 Identities = 107/121 (88%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATCCAACAGCCTCCTAAG 60 ||| |||||||||||||||||||||||||||||||||||||| | ||| ||| |||| || Sbjct 21 ATGCGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACTTTCAAGAGCGTCCTGAG 80 Query 61 GCTGAGTCCAGGAGATCTAA-GAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAA 119 ||||| | ||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct 81 GCTGACACTGGGAGATCCGATGA-TGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAA 139 Query 120 T 120 | Sbjct 140 T 140 > Ahg921415 jgi|Araly1|921415|scaffold_102696.1 Length=1048 Score = 231 bits (125), Expect = 7e-60 Identities = 289/366 (79%), Gaps = 20/366 (5%) Strand=Plus/Plus Query 612 AAAGAAGG-AATCAAGACTTTGGAGAGCTGCTGAGAA-AAAACATCCATGGTATGATGCT 669 |||| ||| || || |||||||| || | | ||||| || | ||||||||||||||||| Sbjct 77 AAAG-AGGCAAGCAGGACTTTGGCTAGGTACAGAGAAGAAGA-ATCCATGGTATGATGCT 134 Query 670 CCAGCTAAGGTGAAGGTGACAA-CAAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAA 728 || |||||||||||||||| || |||||| | || |||| ||| |||||||| |||| | Sbjct 135 CCTGCTAAGGTGAAGGTGAAAACCAAAAATG-GTATTTGTCATATGAACATAAAATTTAC 193 Query 729 ATTGGGATTGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAA-ACAACTTTCCTT 787 ||||||| ||||||| ||| ||||||||||||| |||||||||||| | ||| | | | Sbjct 194 ATTGGGAGAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGA-AACATAACAT 252 Query 788 TCTTCAAAGAGGATAAGGCCG--GGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTT 845 |||| | || || | || |||| ||||| ||||||||||||||||||||||||| Sbjct 253 ACTTCGATTTTGACAA-G-CGTTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTT 310 Query 846 GAAGAAGGATGGACCAAGGCAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC 904 ||||||||||||||| ||||||| |||||| ||| | ||| ||| || ||||| || | Sbjct 311 GAAGAAGGATGGACCGAGGCAGATCACGGATGTGAGGAAA-GCTCTGAGATGGAAGTTCC 369 Query 905 TTGGGTGTTCAGTAGA-TATCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATC 961 || ||| || | | | |||||| || ||||| || || | | ||||||||| || |||| Sbjct 370 TTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTAT-CGATGAAAACCATCAA-AATC 426 Query 962 TAACAG 967 | |||| Sbjct 427 TTACAG 432 Score = 158 bits (85), Expect = 1e-37 Identities = 195/246 (79%), Gaps = 15/246 (6%) Strand=Plus/Plus Query 137 ATTATGACGAAGAGGAAACCAAGAGGCAAAAT-GAACTATGGAAAGCTGCAGAGAAGAAG 195 |||||||| ||| ||| ||||||| || | ||||| |||| || |||| |||| ||| Sbjct 811 ATTATGACTTAGAAGAAGTAAAGAGGC-AAGTAGAACTTTGGATAGTTGCAAAGAATAAG 869 Query 196 CATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCAAGAAAGGTTTTGAAG 255 | ||||||||||||||| ||| |||| ||||||| || ||||||| ||||||||||||| Sbjct 870 CTTCCATGGTATGATGCTCCTGCTAAAGTGAAGGAAAATAAATCAACAAAGGTTTTGAAG 929 Query 256 AAGGATGGACCGAGGCAGATTGTGAGAT-T-GAAGAAAGCTGTG-GCATGGGA-CTTTCT 311 ||||||||||||||||| || | ||| | || ||||||| || | |||| | || || Sbjct 930 AAGGATGGACCGAGGCAAATCACG-GATGTAGA-GAAAGCTTTGAG-ATGGAAGCTC-CT 985 Query 312 ATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGATGTaaacaaa-aaagatctt 369 || |||||||||| | ||| |||| |||| ||| ||||| ||||| | ||| ||||| Sbjct 986 TTGTTGGTCTGGAGC-TATCCCGATACATCTCATTATCGAT-TAAACCATCAAA-ATCTT 1042 Query 370 acagca 375 |||||| Sbjct 1043 ACAGCA 1048 Score = 110 bits (59), Expect = 3e-23 Identities = 117/144 (81%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGTGAGAT-TGAAGAAAG 292 |||||||| ||||||||||||||||||||||||||||||||| | ||| ||| ||||| Sbjct 293 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAG 351 Query 293 CTGTG-GCATGGGACTTTCTATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGA 350 || || | |||| | || || | |||||||||| | | ||| ||| |||||||| |||| Sbjct 352 CTCTGAG-ATGGAAGTTCCTTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTATCGA 409 Query 351 TGTaaacaaa-aaagatcttacag 373 || |||| | ||| ||||||||| Sbjct 410 TGAAAACCATCAAA-ATCTTACAG 432 Score = 106 bits (57), Expect = 5e-22 Identities = 121/151 (80%), Gaps = 7/151 (5%) Strand=Plus/Plus Query 822 GGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGGCAGACCACGGAGGTGGA 881 |||||| |||||||||||||||||||||||||||||||| ||||| | |||||| || || Sbjct 902 GGAAAATAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAAATCACGGATGTAGA 961 Query 882 AAAAGCTTTGTCCTGGAA-CTTTCTTGGGTGTTCAGTAGATATCCCAATACATCTTATAA 940 ||||||||| ||||| || ||| | || || | || |||||| |||||||| || | Sbjct 962 GAAAGCTTTGAGATGGAAGCTC-CTTTGTTGGTCTGGAGCTATCCCGATACATCTCATTA 1020 Query 941 TTC-ACGAAAACCAT-AAGAATCTAACAGCA 969 | | | ||| |||| || ||||| |||||| Sbjct 1021 T-CGATTAAA-CCATCAA-AATCTTACAGCA 1048 > Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008 Length=822 Score = 180 bits (97), Expect = 3e-44 Identities = 190/234 (81%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACAT-C--CAACAGCCTCCT 57 |||| ||||||||| |||||| |||||||||||| |||||| | | ||||||||| | Sbjct 1 ATGAATGTATTTCCAAGATTTGTTGGCTGGATCAACCAGAACCTGCAACAACAGCCTGTT 60 Query 58 AAGGCTGAGTCCAGGAGATCTAAGAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACT 117 ||| |||||||| ||||||| ||||||| | ||||||||||||||||||||||||||| Sbjct 61 CAGGATGAGTCCAAGAGATCTGAGAATGTCGACTCTAATTCAGTGTCAGAGAAAGATACT 120 Query 118 AATAATGAGGAAGGACTAAATTATGACGAAGAGGAAACCAAGAGGCAA--AATGAACTAT 175 ||||| ||||| || ||||||| ||| || | |||| |||| || |||| | Sbjct 121 AATAAACAGGAATTT-TA--TTATGACAAAGCTGAGGCTAAGAAGCAAGGAA--AACTTT 175 Query 176 GGAAAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGG 229 ||| |||||||||||||||| | |||||||||||||| ||| |||| ||||||| Sbjct 176 GGAGAGCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTGCTAAAGTGAAGG 229 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47653646250 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5