BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23640.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167 1238 0.0
Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 734 0.0
Ahg921417 jgi|Araly1|921417|scaffold_102698.1 235 6e-61
Ahg921415 jgi|Araly1|921415|scaffold_102696.1 231 7e-60
Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008 180 3e-44
> Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167
Length=795
Score = 1238 bits (670), Expect = 0.0
Identities = 744/780 (95%), Gaps = 4/780 (1%)
Strand=Plus/Plus
Query 498 ATTTAGTGGGTCGATCAATCCTCATGTTGAAGAGCCTCATGAGGTCGAGTCCAAGAGCCC 557
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 18 ATTTAGTGGATCGATCAATCCTCATGTTGAAGAGCCGCATGAGGTCGAGTCCAAGAACCC 77
Query 558 TGCATCTAATTCTGTGTGGGCGGTAGATCCTAAATATTATGACTTAGCTGAGGTAAAGAA 617
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 78 CGCATCTAATTCTGTGTGGGCGGTAGACCCTAAATATTATGACTTAGCTGAGGTAAAGAA 137
Query 618 GGAATCAAGACTTTGGAGAGCTGCTGAGAAAAAACATCCATGGTATGATGCTCCAGCTAA 677
|||||||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 138 GGAATCAAAACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAA 197
Query 678 GGTGAAGGTGACAAC-AAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAAATTGGGAT 736
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 198 GGTGAAGGTGACAACAAAAAAAG-GTCTTTGCCATTTGAACATAGAATTCAAATTGGGAT 256
Query 737 TGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAAACAACTTTCCTTTCTTCAAAG 796
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TGCCTCCTGAAGCAGTCTACGAGATGTTCACTAATCCAAACAACTTTCCTTTCTTCAAAG 316
Query 797 AGGATAAGGCCGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATG 856
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGGACAAGGACGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATG 376
Query 857 GACCAAGGCAGACCACGGAGGTGGAAAAAGCTTTGTCCTGGAACTTTCTTGGGTGTTCAG 916
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 377 GACCGAGGCAGACCACAGAGGTGGAAAAAGCTTTGTCCTGGAACTTTCTTGGGTGTTCTG 436
Query 917 TAGATATCCCAATACATCTTATAATTCACGAAAACCATAAGAATCTAACAGCAAAATATA 976
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 437 GAGATATCCCAATACATCTTATAATCCACGAAAACCATAAGAATCTAACTGCAAAATATA 496
Query 977 CGACAAAGAAAATGATGTTAATGAAAGTGTTCAAGGGTAGCTGGAAAGTTGAGCCAGATT 1036
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 497 CGACAAAGAAAATGATTTTAATGAAAGTGTTCGAGGGTAGCTGGAAAGTTGAGCCAGACT 556
Query 1037 ACGTAGATCAGGAACGCTTGTGCAAGTCAAGGTCGCCAAAAAGTCGAGAAGAATACAAAA 1096
|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 557 ACGTAGATCAGGAACGCTTGTGCAAGCCAAGGTTGCCAAAAAGTCGAAAAGAATACAAAA 616
Query 1097 TATGTAGCGGTGGACAAGGAAAAGTTGGGTCAAAAGTTACAATGGAGCAGATTTTTGAGC 1156
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||
Sbjct 617 TATGTAGCGGTGGACAAGGAAAAGTTGGGTCGAAAGTTTCAATGGAGCAGATTTTTCAGC 676
Query 1157 CTTCTTCTCTTCTTAATCGACCACCGGTTTCTTGGATCATTCGTGGGATCACCATCAGAA 1216
|||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 677 CTTCTTCTCTTCTTAATCTACCACCGGTTTCATGGATCATTTGTGGGATCACCATCAGAA 736
Query 1217 CCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCGGGTACCACTTTACGAGAA-GTTTGA 1275
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 737 CCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCGGGTACCTCTTTACG-GAAAGTTTGA 795
Score = 134 bits (72), Expect = 2e-30
Identities = 180/230 (78%), Gaps = 15/230 (7%)
Strand=Plus/Plus
Query 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGT-GAGATTGAAGAAAG 292
|||||||| |||||||||||||||||||||||||||||||| ||| | ||| ||||
Sbjct 348 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGTGGAA-AAAG 406
Query 293 CTGTGGCATGGGACTTTCTATGG-TGGTCTGGAGAATTTCCGA-TAAATCTAATTGTCGA 350
|| || | ||| ||||||| ||| || |||||||| | ||| | || |||| || || |
Sbjct 407 CTTTGTCCTGGAACTTTCT-TGGGTGTTCTGGAGA-TATCCCAATACATCTTATAATCCA 464
Query 351 TGTaaacaaaaaaga-tcttacagcaaaatataaaa-aagagaaaaTGATGTTCATGAAA 408
| |||| | || || ||| || |||||||||| | || |||||||||| || ||||||
Sbjct 465 CGAAAACCATAA-GAATCTAACTGCAAAATATACGACAA-AGAAAATGATTTTAATGAAA 522
Query 409 GTTTTCGAAGGTAACTGGAA-GATAGAGCCACTA-TATGTAGATTCAGGA 456
|| ||||| |||| |||||| | | |||||| | || |||||| |||||
Sbjct 523 GTGTTCGAGGGTAGCTGGAAAGTT-GAGCCAG-ACTACGTAGAT-CAGGA 569
Score = 89.8 bits (48), Expect = 5e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 170 AACTATGGAAAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGG 229
|||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 146 AACTTTGGAGAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCAGCTAAGGTGAAGG 205
> Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006
Length=678
Score = 734 bits (397), Expect = 0.0
Identities = 435/454 (96%), Gaps = 0/454 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATCCAACAGCCTCCTAAG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATTCAACAGCCTCCTAAG 60
Query 61 GCTGAGTCCAGGAGATCTAAGAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAAT 120
|||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
Sbjct 61 GCTGAGTCCAGGAGATCTGAGAATGTTAAATCTAATTTAGTTTCAGAGAAAGATACTAAT 120
Query 121 AATGAGGAAGGACTAAATTATGACGAAGAGGAAACCAAGAGGCAAAATGAACTATGGAAA 180
||||||||||||||||||||||| |||||||| | ||||||||| ||||||| ||||||
Sbjct 121 AATGAGGAAGGACTAAATTATGAAGAAGAGGAGATGAAGAGGCAACATGAACTTTGGAAA 180
Query 181 GCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCA 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGCGGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCA 240
Query 241 AGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGTGAGATTGAAGAAAGCTGTGGCA 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 AGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCGTGAGATTGAAGAAAGCTGTGGCT 300
Query 301 TGGGACTTTCTATGGTGGTCTGGAGAATTTCCGATAAATCTAATTGTCGATGTaaacaaa 360
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 301 TGGGACTTTCTTTGGTGGTCTGGAGATTTTCCGATACATCTAATTGTCGATGTAAACAAA 360
Query 361 aaagatcttacagcaaaatataaaaaagagaaaaTGATGTTCATGAAAGTTTTCGAAGGT 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGATCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGAAAGTTTTCGAAGGT 420
Query 421 AACTGGAAGATAGAGCCACTATATGTAGATTCAG 454
|||||||| |||||||||||||| ||||||||||
Sbjct 421 AACTGGAAAATAGAGCCACTATACGTAGATTCAG 454
> Ahg921417 jgi|Araly1|921417|scaffold_102698.1
Length=610
Score = 235 bits (127), Expect = 6e-61
Identities = 319/407 (78%), Gaps = 32/407 (8%)
Strand=Plus/Plus
Query 577 GCGGTAGATCCTAAATATTAT-GACTTAGCTGAGGTAAAGAAGG-AATCAAG-ACTTTGG 633
||||||||| ||||||||| | ||| || ||| | ||| ||| |||| || |||||||
Sbjct 216 GCGGTAGATACTAAATATT-TCGACGTAAATGATATGAAG-AGGCAATC-AGAACTTTGG 272
Query 634 AGAGCTGCTGAGAA-AA-AA-CATCCATGGTATGATGCTCCAGCTAAGGTGAAGGTGACA 690
| || ||||| || || ||||| |||||| |||||| || |||||| |||||| |
Sbjct 273 -CA--TGGAGAGAAGAAGAAGCATCCGTGGTATCCTGCTCCTGCCAAGGTGGAGGTGAAA 329
Query 691 ACAAAAAAGT-GTCTTTGCCATTTGAACATAGAATTCA-AATTGGGATTGCCTCCTGAAG 748
|||||||| | ||||||||||| ||||||||||||||| |||| ||| | |||| ||
Sbjct 330 ACAAAAAA-TGGTCTTTGCCATATGAACATAGAATTCACAATT-GGAGTAATTCCTCCAG 387
Query 749 CAGTCTATGAGATGTTCACTAATCCAA-ACAAC-TTTCCTTTCTTCA-AAGAGGA-TAAG 804
|||||||||||||| |||||||||||| | ||| | | | ||||||| | |||| ||
Sbjct 388 CAGTCTATGAGATGCTCACTAATCCAAGA-AACATAT-CATTCTTCATTA-AGGACGAAC 444
Query 805 GCCGGGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGG 864
| |||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 445 G-TTGGCGACAACGTCTGGAAAACAAATCAACAAAGGTTTTGAAGAAAGATGGACCGAGG 503
Query 865 CAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC-TTGGGTGTTCAGTAGATA 922
|||| |||||| ||| ||||| |||||| ||||| || | || ||| || | || ||
Sbjct 504 CAGATCACGGATGTGAGAAAA-GCTTTGAGATGGAAGTT-CATTATGTGGTCTGGAGCTA 561
Query 923 TCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATCTAACAG 967
|||| || ||||| || || | | |||| ||| || ||||| ||||
Sbjct 562 TCCCTATTCATCTAATTAT-CGATTAAAATCATCAA-AATCTTACAG 606
Score = 145 bits (78), Expect = 1e-33
Identities = 107/121 (88%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACATCCAACAGCCTCCTAAG 60
||| |||||||||||||||||||||||||||||||||||||| | ||| ||| |||| ||
Sbjct 21 ATGCGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACTTTCAAGAGCGTCCTGAG 80
Query 61 GCTGAGTCCAGGAGATCTAA-GAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAA 119
||||| | ||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 81 GCTGACACTGGGAGATCCGATGA-TGTTAAATCTAATTCAGTGTCAGAGAAAGATACTAA 139
Query 120 T 120
|
Sbjct 140 T 140
> Ahg921415 jgi|Araly1|921415|scaffold_102696.1
Length=1048
Score = 231 bits (125), Expect = 7e-60
Identities = 289/366 (79%), Gaps = 20/366 (5%)
Strand=Plus/Plus
Query 612 AAAGAAGG-AATCAAGACTTTGGAGAGCTGCTGAGAA-AAAACATCCATGGTATGATGCT 669
|||| ||| || || |||||||| || | | ||||| || | |||||||||||||||||
Sbjct 77 AAAG-AGGCAAGCAGGACTTTGGCTAGGTACAGAGAAGAAGA-ATCCATGGTATGATGCT 134
Query 670 CCAGCTAAGGTGAAGGTGACAA-CAAAAAAGTGTCTTTGCCATTTGAACATAGAATTCAA 728
|| |||||||||||||||| || |||||| | || |||| ||| |||||||| |||| |
Sbjct 135 CCTGCTAAGGTGAAGGTGAAAACCAAAAATG-GTATTTGTCATATGAACATAAAATTTAC 193
Query 729 ATTGGGATTGCCTCCTGAAGCAGTCTATGAGATGTTCACTAATCCAA-ACAACTTTCCTT 787
||||||| ||||||| ||| ||||||||||||| |||||||||||| | ||| | | |
Sbjct 194 ATTGGGAGAGCCTCCTCAAGGAGTCTATGAGATGCTCACTAATCCAAGA-AACATAACAT 252
Query 788 TCTTCAAAGAGGATAAGGCCG--GGCGCCAACGTTTGGAAAACAAATCAACAAAGGTTTT 845
|||| | || || | || |||| ||||| |||||||||||||||||||||||||
Sbjct 253 ACTTCGATTTTGACAA-G-CGTTGGCGACAACGCCTGGAAAACAAATCAACAAAGGTTTT 310
Query 846 GAAGAAGGATGGACCAAGGCAGACCACGGAGGTG-GAAAAAGCTTTGTCCTGGAACTTTC 904
||||||||||||||| ||||||| |||||| ||| | ||| ||| || ||||| || |
Sbjct 311 GAAGAAGGATGGACCGAGGCAGATCACGGATGTGAGGAAA-GCTCTGAGATGGAAGTTCC 369
Query 905 TTGGGTGTTCAGTAGA-TATCCCAATACATCTTATAATTC-ACGAAAACCAT-AAGAATC 961
|| ||| || | | | |||||| || ||||| || || | | ||||||||| || ||||
Sbjct 370 TTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTAT-CGATGAAAACCATCAA-AATC 426
Query 962 TAACAG 967
| ||||
Sbjct 427 TTACAG 432
Score = 158 bits (85), Expect = 1e-37
Identities = 195/246 (79%), Gaps = 15/246 (6%)
Strand=Plus/Plus
Query 137 ATTATGACGAAGAGGAAACCAAGAGGCAAAAT-GAACTATGGAAAGCTGCAGAGAAGAAG 195
|||||||| ||| ||| ||||||| || | ||||| |||| || |||| |||| |||
Sbjct 811 ATTATGACTTAGAAGAAGTAAAGAGGC-AAGTAGAACTTTGGATAGTTGCAAAGAATAAG 869
Query 196 CATCCATGGTATGATGCACCTCCTAAGGTGAAGGCAACCAAATCAAGAAAGGTTTTGAAG 255
| ||||||||||||||| ||| |||| ||||||| || ||||||| |||||||||||||
Sbjct 870 CTTCCATGGTATGATGCTCCTGCTAAAGTGAAGGAAAATAAATCAACAAAGGTTTTGAAG 929
Query 256 AAGGATGGACCGAGGCAGATTGTGAGAT-T-GAAGAAAGCTGTG-GCATGGGA-CTTTCT 311
||||||||||||||||| || | ||| | || ||||||| || | |||| | || ||
Sbjct 930 AAGGATGGACCGAGGCAAATCACG-GATGTAGA-GAAAGCTTTGAG-ATGGAAGCTC-CT 985
Query 312 ATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGATGTaaacaaa-aaagatctt 369
|| |||||||||| | ||| |||| |||| ||| ||||| ||||| | ||| |||||
Sbjct 986 TTGTTGGTCTGGAGC-TATCCCGATACATCTCATTATCGAT-TAAACCATCAAA-ATCTT 1042
Query 370 acagca 375
||||||
Sbjct 1043 ACAGCA 1048
Score = 110 bits (59), Expect = 3e-23
Identities = 117/144 (81%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATTGTGAGAT-TGAAGAAAG 292
|||||||| ||||||||||||||||||||||||||||||||| | ||| ||| |||||
Sbjct 293 CAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACG-GATGTGAGGAAAG 351
Query 293 CTGTG-GCATGGGACTTTCTATGGTGGTCTGGAGAATTTCC-GATAAATCTAATTGTCGA 350
|| || | |||| | || || | |||||||||| | | ||| ||| |||||||| ||||
Sbjct 352 CTCTGAG-ATGGAAGTTCCTTTTGTGGTCTGGA-ACTATCCCGATTCATCTAATTATCGA 409
Query 351 TGTaaacaaa-aaagatcttacag 373
|| |||| | ||| |||||||||
Sbjct 410 TGAAAACCATCAAA-ATCTTACAG 432
Score = 106 bits (57), Expect = 5e-22
Identities = 121/151 (80%), Gaps = 7/151 (5%)
Strand=Plus/Plus
Query 822 GGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCAAGGCAGACCACGGAGGTGGA 881
|||||| |||||||||||||||||||||||||||||||| ||||| | |||||| || ||
Sbjct 902 GGAAAATAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAAATCACGGATGTAGA 961
Query 882 AAAAGCTTTGTCCTGGAA-CTTTCTTGGGTGTTCAGTAGATATCCCAATACATCTTATAA 940
||||||||| ||||| || ||| | || || | || |||||| |||||||| || |
Sbjct 962 GAAAGCTTTGAGATGGAAGCTC-CTTTGTTGGTCTGGAGCTATCCCGATACATCTCATTA 1020
Query 941 TTC-ACGAAAACCAT-AAGAATCTAACAGCA 969
| | | ||| |||| || ||||| ||||||
Sbjct 1021 T-CGATTAAA-CCATCAA-AATCTTACAGCA 1048
> Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008
Length=822
Score = 180 bits (97), Expect = 3e-44
Identities = 190/234 (81%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 1 ATGAGTGTATTTCCTGGATTTGGTGGCTGGATCAATCAGAACAT-C--CAACAGCCTCCT 57
|||| ||||||||| |||||| |||||||||||| |||||| | | ||||||||| |
Sbjct 1 ATGAATGTATTTCCAAGATTTGTTGGCTGGATCAACCAGAACCTGCAACAACAGCCTGTT 60
Query 58 AAGGCTGAGTCCAGGAGATCTAAGAATGTTAAATCTAATTCAGTGTCAGAGAAAGATACT 117
||| |||||||| ||||||| ||||||| | |||||||||||||||||||||||||||
Sbjct 61 CAGGATGAGTCCAAGAGATCTGAGAATGTCGACTCTAATTCAGTGTCAGAGAAAGATACT 120
Query 118 AATAATGAGGAAGGACTAAATTATGACGAAGAGGAAACCAAGAGGCAA--AATGAACTAT 175
||||| ||||| || ||||||| ||| || | |||| |||| || |||| |
Sbjct 121 AATAAACAGGAATTT-TA--TTATGACAAAGCTGAGGCTAAGAAGCAAGGAA--AACTTT 175
Query 176 GGAAAGCTGCAGAGAAGAAGCATCCATGGTATGATGCACCTCCTAAGGTGAAGG 229
||| |||||||||||||||| | |||||||||||||| ||| |||| |||||||
Sbjct 176 GGAGAGCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTGCTAAAGTGAAGG 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5