BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23660.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167 832 0.0
Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008 440 7e-123
Ahg900578 jgi|Araly1|900578|Al_scaffold_0004_1228 424 7e-118
Ahg921417 jgi|Araly1|921417|scaffold_102698.1 285 4e-76
Ahg921411 jgi|Araly1|921411|scaffold_102692.1 283 1e-75
Ahg921415 jgi|Araly1|921415|scaffold_102696.1 250 1e-65
Ahg921414 jgi|Araly1|921414|scaffold_102695.1 219 4e-56
Ahg472613 jgi|Araly1|472613|fgenesh2_kg.1__2567__AT1G23510.1 52.8 4e-06
> Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167
Length=795
Score = 832 bits (450), Expect = 0.0
Identities = 690/805 (86%), Gaps = 20/805 (2%)
Strand=Plus/Plus
Query 74 ATGAGTGTGCTTCCTGGATTTGGTAGCTGGATCAATCAGAATGTTGAAGAGCCTCCTGAG 133
|||||||| ||||| ||||| || | | |||||||| ||||||||||||| | ||||
Sbjct 1 ATGAGTGTAATTCCTAGATTTAGTGGATCGATCAATCCTCATGTTGAAGAGCCGCATGAG 60
Query 134 GCCGAGTCCAA-AAGCCCTAAATCTGAA-GCTGTGTGGGCGGTAGATACTAAATATTACG 191
| ||||||||| || ||| |||| || |||||||||||||||| |||||||||| |
Sbjct 61 GTCGAGTCCAAGAA-CCCCGCATCT-AATTCTGTGTGGGCGGTAGACCCTAAATATTATG 118
Query 192 ACTTAGATGAAGT-GAGGAGAGAAGGAGAAA-TTTGGAGAGCTGCAGAGGAA-AAGCATC 248
|||||| ||| || || || ||| | ||| |||||||||||||||| ||| |||||||
Sbjct 119 ACTTAGCTGAGGTAAAGAAG-GAATCA-AAACTTTGGAGAGCTGCAGA-GAAGAAGCATC 175
Query 249 CATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAATGGTCTTTGCCATATGA 308
||||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 176 CATGGTATGATGCACCAGCTAAGGTGAAGGTGACAACAAAAAAAGGTCTTTGCCATTTGA 235
Query 309 ACATAGAATTTAAACTGGGATTACCTCCTGAAGGAGTCTACGAGATGTTCACTAATCCAA 368
|||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 236 ACATAGAATTCAAATTGGGATTGCCTCCTGAAGCAGTCTACGAGATGTTCACTAATCCAA 295
Query 369 ACAACTATCCAGTCTTCAAAAAGGACAAGGCCGGGCGCCAACGTCTGGAAAACAAATCAA 428
|||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 296 ACAACTTTCCTTTCTTCAAAGAGGACAAGGACGGGCGCCAACGTTTGGAAAACAAATCAA 355
Query 429 GAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGGAGATGGAAAAAGATTTGTACT 488
||| ||||||||||| ||||||||||||||||||| ||| ||||||||| ||||| ||
Sbjct 356 CAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGTGGAAAAAGCTTTGTCCT 415
Query 489 GGAACTTCCTTTTCATATCCAG-AGCA-ATCCCGATACATCT-AGTTATCGATGAAAATC 545
||||||| ||| | | | | || | ||||| |||||||| | | ||| | ||||| |
Sbjct 416 GGAACTTTCTTGGG-TGTTCTGGAG-ATATCCCAATACATCTTA-TAATCCACGAAAACC 472
Query 546 ATAAGAATCTCACAGCAAAATATAGGACAAAGAATATGATGTTTT-TGAAAGTGTTGGAG 604
|||||||||| || |||||||||| ||||||||| ||||| ||| |||||||||| |||
Sbjct 473 ATAAGAATCTAACTGCAAAATATACGACAAAGAAAATGAT-TTTAATGAAAGTGTTCGAG 531
Query 605 GGTAGCTGGAAAGTGGTGCCAGACTTTGTAGATCAGGAACGCTTGTGCAAGTCAAGGTTG 664
|||||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 532 GGTAGCTGGAAAGTTGAGCCAGACTACGTAGATCAGGAACGCTTGTGCAAGCCAAGGTTG 591
Query 665 CCGAAAAGTCGAGAAGAATACAAAAGATGTAGTGGTGGACAAGGAAAGGTTGGGTCCAAG 724
|| ||||||||| |||||||||||| |||||| |||||||||||||| |||||||| ||
Sbjct 592 CCAAAAAGTCGAAAAGAATACAAAATATGTAGCGGTGGACAAGGAAAAGTTGGGTCGAAA 651
Query 725 GTGACCATGGAGCAGATCTTTAAGCCTTCTCCTCTTCTTAATCTGCCACCGGTTTCTTGG 784
|| | ||||||||||| ||| |||||||| ||||||||||||| ||||||||||| |||
Sbjct 652 GTTTCAATGGAGCAGATTTTTCAGCCTTCTTCTCTTCTTAATCTACCACCGGTTTCATGG 711
Query 785 ATAATCCGTGGGATTACCATCAAAACCACCAAGATTCTGCTCGAAGATATTCGAAAAGCA 844
|| || ||||||| ||||||| ||||||||||||||||||||||||| || |||||||
Sbjct 712 ATCATTTGTGGGATCACCATCAGAACCACCAAGATTCTGCTCGAAGATCTTAGAAAAGCG 771
Query 845 GGTACCACTTTACG-AACAGTTTGA 868
|||||| ||||||| || |||||||
Sbjct 772 GGTACCTCTTTACGGAA-AGTTTGA 795
> Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008
Length=822
Score = 440 bits (238), Expect = 7e-123
Identities = 523/656 (80%), Gaps = 37/656 (6%)
Strand=Plus/Plus
Query 213 AAGGAGAAA-TTTGGAGAGCTGCAGAGGAA-AAGCATCCATGGTATGATGCTCCTGCTAA 270
||||| ||| |||||||||||||||| ||| ||| | |||||||||||||||||||||||
Sbjct 164 AAGGA-AAACTTTGGAGAGCTGCAGA-GAAGAAGAAACCATGGTATGATGCTCCTGCTAA 221
Query 271 GGTGAAGGTGACAACAAAAAATGGTCTTTGCCATATGAACATAGAATTTAAACTGGGATT 330
||||||||||||||||| || ||||||||||| ||| |||||||||| | | | |||||
Sbjct 222 AGTGAAGGTGACAACAAAGAAGGGTCTTTGCCACATGCACATAGAATTGACAGTAGGATT 281
Query 331 ACCTCCTGAAGGAGTCTACGAGATGTTCACTAATCCAAACAACTATCCAGTCTTCAAAAA 390
|||||||||||||||||||| ||||| ||||||||||| ||| |||| |||||| |
Sbjct 282 GCCTCCTGAAGGAGTCTACGATTTGTTCGCTAATCCAAACGACTTTCCATTCTTCAGGAT 341
Query 391 GGACAA-G-G-CCGGGCGCCAACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAA 447
|| || | | | |||||| ||| | ||||||||||||||||||| ||||||| ||| |
Sbjct 342 TGATAATGAGACTGGGCGCGAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAGGA 401
Query 448 TGGACCGAGGCAGACCACGGAGATGGAAAAAGATTTGTA-CTGGAACTTCCTTTTCAT-A 505
|||||||||||||| | | || |||| |||| | || | |||| |||| ||||| |
Sbjct 402 TGGACCGAGGCAGATCGTGCAGTTGGAGAAAGCTGTG-ACCTGGGACTTTCTTTT-GTGG 459
Query 506 TCCAGAGCAATCCCG-ATACATCTAGTTATCGATGAAAATC-ATAAGAATCTCACAGCAA 563
| |||| | ||| ||| |||| || | |||||||| | | ||| || | | |||||
Sbjct 460 TGTGGAGCTTTTCCGTTTAC-TCTAATTGTTGATGAAAACCAAAAAG-ATTTTAGAGCAA 517
Query 564 AATATAGGACAAAGAATATGATGTTTTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGGTGC 623
|||||| || |||||| |||||||| ||||||| || ||||||| |||||| | | |
Sbjct 518 AATATAAGAAAAAGAAAATGATGTTCATGAAAGTTTTTGAGGGTAAATGGAAAATAGAGT 577
Query 624 CAGACT-T-TGTAGA-TCAGGAACGCTTGTGCAA-GTCAAG-GTTGCCGAAAAGTCGAGA 678
| ||| | ||||| ||| |||||||||||||| | | || | |||||| ||||||||
Sbjct 578 C--ACTGTACGTAGATTCA-GAACGCTTGTGCAAGGAC-AGAG-AGCCGAAGAGTCGAGA 632
Query 679 AGAATACAAAAGATGTAGTGGTGGACAAGGAAAGGTTGGGTCCAAGGTGACCATGGAGCA 738
||||||||||||||||||||| ||||||||||| |||| || || ||||| ||||| ||
Sbjct 633 AGAATACAAAAGATGTAGTGGCGGACAAGGAAAAGTTGCATCGAAAGTGACAATGGACCA 692
Query 739 GAT-CTTT-AAGCCTTCTCCTCTTCTTAATCTGCCACCGGTTTCTTGGATA-ATCCGTGG 795
|| ||| || |||| | |||||||||| | |||||| |||||||| || || |||||
Sbjct 693 -ATACTTCCAA-CCTTATTTTCTTCTTAATATACCACCGCTTTCTTGG-TACATTCGTGG 749
Query 796 GATTACCATCAAAACCACCAAGATTCTGCTCGAAGAT--ATTCGAAAA-GCAGGTA 848
||| ||||||||||||||||| | |||||| || || |||| |||| ||| |||
Sbjct 750 GATCACCATCAAAACCACCAAAAAACTGCTC-AA-ATTGATTC-AAAATGCAAGTA 802
> Ahg900578 jgi|Araly1|900578|Al_scaffold_0004_1228
Length=879
Score = 424 bits (229), Expect = 7e-118
Identities = 490/611 (80%), Gaps = 37/611 (6%)
Strand=Plus/Plus
Query 242 AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAATGGTCTTTGC 301
|||||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 238 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAAGAAAAAAAGGTCTTTGC 297
Query 302 CATATGAACATAGAATTTAAACTGGGATTACCTCCTGAAGGAGTCTAC-GAGATG-TTCA 359
|||||||||||||||||| | |||||| |||||| || ||||| | |||||| || |
Sbjct 298 AATATGAACATAGAATTTACATTGGGATGGCCTCCTCAATTAGTCT-CTGAGATGCTT-A 355
Query 360 CTAATCCAA-ACAAC-TATCCAGT-CTTCAAAA-AG--GACAAGGCCGGGCGCCAACGTC 413
||||||||| | ||| || | | ||||| | | |||| || |||||||||
Sbjct 356 CTAATCCAAGA-AACCTAA--ATTTCTTCAGATTATTCGACAGGGAATTTCGCCAACGTT 412
Query 414 TGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGGA-GATG 472
|||| |||||||||| ||| |||||||||||| | ||||| ||||||| |||||| | ||
Sbjct 413 TGGACAACAAATCAACAAAGGTTTTGAAGAAAGACGGACCAAGGCAGATCACGGAAG-TG 471
Query 473 GAAAAAGA-TTTGTAC-TGGAA-CTTC-CTTTTCATATCCAGAGCAATCCCGATACATCT 528
||||| | ||| || | || |||| | | | || | ||| ||||| ||||||||
Sbjct 472 AAAAAA-ACTTT-TAGATATAAGCTTCTCGGGT--TGTCTATAGCTATCCCTATACATCT 527
Query 529 AGTTATCGATGAAAATCAT-AAGAATCTCACAGCAAAATATAGGACAAAGAATATGATGT 587
| | ||||||||||| ||| || ||||| || ||||||| || || |||||| |||||||
Sbjct 528 AATCATCGATGAAAACCATCAA-AATCTTACTGCAAAATTTAAGAAAAAGAAAATGATGT 586
Query 588 TTTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGGTGCCAGACTTT--GTAGATCAGGAACG 645
|||||||||| ||||||||||||||||||| |||| || | | ||||||||||||
Sbjct 587 ACATGAAAGTGTTTGAGGGTAGCTGGAAAGTGGAGCCA--CTATACGCAGATCAGGAACG 644
Query 646 CTTGTGCAAGTCAAGGTTGCCGAA-AAGTCGAGAAGAATACAAAAGATGTAGTGGTGGAC 704
|| |||||||| |||| || || || | ||||||||||||||| ||||||||| |||
Sbjct 645 TTTATGCAAGTCTAGGTCGCGGATTAA-TGGAGAAGAATACAAAAAATGTAGTGGCGGAA 703
Query 705 AAGGAAAGG-TTGGGTCCAAGGTGACCATGGAGCAGATCTTTAAGCCTTCTCCTCTTCTT 763
|||||| || |||| || || ||||| ||||||||||||||| |||||| | ||||||||
Sbjct 704 AAGGAA-GGATTGGATCAAAAGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTT 762
Query 764 AATCTGCCACCGGTTTCTTGGATAATCCGTGGGATTACCATCAAAACCAC-CAAGA-TTC 821
||| |||||||| |||||||| | ||||||| ||| ||||| ||||| | ||||| ||
Sbjct 763 AATGTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATAAAAAC-ATTCAAGAATT- 820
Query 822 TGCTCGAAGAT 832
|||||||||||
Sbjct 821 TGCTCGAAGAT 831
> Ahg921417 jgi|Araly1|921417|scaffold_102698.1
Length=610
Score = 285 bits (154), Expect = 4e-76
Identities = 326/405 (80%), Gaps = 28/405 (7%)
Strand=Plus/Plus
Query 170 GCGGTAGATACTAAATATTACGACTTAGATGA-AGTGAGGAGAG-AAGGAGAAATTTGGA 227
||||||||||||||||||| |||| || |||| | ||| ||| | || |||| |||||
Sbjct 216 GCGGTAGATACTAAATATTTCGACGTAAATGATA-TGAAGAG-GCAATCAGAACTTTGG- 272
Query 228 GAGCTGCAGAG--GAA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAA 284
| || |||| ||| |||||||| |||||| ||||||||| |||||| |||||| ||
Sbjct 273 CA--TGGAGAGAAGAAGAAGCATCCGTGGTATCCTGCTCCTGCCAAGGTGGAGGTGAAAA 330
Query 285 CAAAAAATGGTCTTTGCCATATGAACATAGAATTTA-AACTGGGATTACCTCCTGAAGGA 343
|||||||||||||||||||||||||||||||||| | || ||| | || |||| || |
Sbjct 331 CAAAAAATGGTCTTTGCCATATGAACATAGAATTCACAATTGG-AGTAATTCCTCCAGCA 389
Query 344 GTCTACGAGATGTTCACTAATCCAA-ACAAC-TATCCAGTCTTCAAAAAGGAC-AAGGCC 400
||||| |||||| |||||||||||| | ||| |||| | |||||| |||||| || |
Sbjct 390 GTCTATGAGATGCTCACTAATCCAAGA-AACATATC-ATTCTTCATTAAGGACGAACGTT 447
Query 401 GGGCGCCAACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAG 460
|| || |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 448 GG-CGACAACGTCTGGAAAACAAATCAACAAAGGTTTTGAAGAAAGATGGACCGAGGCAG 506
Query 461 ACCACGGA-GATG-GAAAAAGATTTGT-ACTGGAACTTCCTTTTCATA-TCCAGAGCAAT 516
| |||||| | || ||||| | |||| | ||||| ||| || | | || |||| ||
Sbjct 507 ATCACGGATG-TGAGAAAA-GCTTTGAGA-TGGAAGTTCATTATG-TGGTCTGGAGCTAT 562
Query 517 CCCGATACATCTAGTTATCGATGAAAATCAT-AAGAATCTCACAG 560
||| || |||||| |||||||| |||||||| || ||||| ||||
Sbjct 563 CCCTATTCATCTAATTATCGATTAAAATCATCAA-AATCTTACAG 606
> Ahg921411 jgi|Araly1|921411|scaffold_102692.1
Length=922
Score = 283 bits (153), Expect = 1e-75
Identities = 499/657 (76%), Gaps = 59/657 (9%)
Strand=Plus/Plus
Query 182 AAATATTACGACTTAGATGAAG-TGAGGAGAGAAGGA-GAAATTTGGAGAGCTGCAGAGG 239
|||||||| ||| ||| | || ||| || | || || || |||||| || |||||| |
Sbjct 159 AAATATTATGACGAAGAAG-AGATGAAGAAACAA-GATCAACTTTGGATAGATGCAGA-G 215
Query 240 AA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAATGGTCTT 298
|| |||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 216 AAGAAGCATCCATGGAATGATGCCCCTCCAAAGGTGAAGGTGACAACAAAAAATGGTCTT 275
Query 299 TGCCATATGAACATAGAATTTAAACTGGGATTACCTCCTGA-AGGAGTCTACGAGATGTT 357
|||||||||||||||||||| | ||||||||| ||||| || | ||||| || ||| ||
Sbjct 276 TGCCATATGAACATAGAATTGACACTGGGATTTCCTCCAGATAA-AGTCTTCG-GATTTT 333
Query 358 C-ACTAATCCAAAC-AACT-ATCCAGTCTT-CAAAAAGGACAAGGCCGGGCGCCAACGTC 413
||| ||||| | ||| | ||| | || | | || | | | | ||
Sbjct 334 TTACTGATCCAT-CTAACGGA-CCATTTTTTCT-------CT---CC---C-C-ACC-TC 375
Query 414 TGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGGAGATGG 473
||||||||||||| ||||| ||| ||| | | ||||||| ||||||| | || || ||
Sbjct 376 TGGAAAACAAATCGAGAAAGGTTCTGATGGAGGATGGACCAAGGCAGATCGCGAAGGTGA 435
Query 474 A-AAAAGATTTGTACTGGAACTTCCTTT--TCATATCCAGAGCAATCCCGATACA-TCTA 529
| |||| | | ||||||| |||||| || | | | | |||| ||| | | ||
Sbjct 436 AGAAAACCGTGG-ACTGGAAATTCCTTGGGTCGTCTTTTG--CTGTCCCCATA-AGTGTA 491
Query 530 GTTATCGATGAAAATCATAAGA-ATCTCACAGCAAAATATAGGACAAAGAATATGATGTT 588
|| |||||||||| || || | |||| || |||||||||| || |||||| ||||| ||
Sbjct 492 ATTGTCGATGAAAA-CAGAAAAGATCTTACTGCAAAATATAAGAAAAAGAAAATGATCTT 550
Query 589 TTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGGTGCCAGACTTTGTAGAT-CAGGAACGCT 647
|||||||||| |||||||||| ||||||| ||||| | ||||||| ||| ||||||
Sbjct 551 AATGAAAGTGTTCGAGGGTAGCTATAAAGTGGAGCCAGTGTATGTAGATTCAG-AACGCT 609
Query 648 TGTGCAAGT-CAAGGTTGCCGAAAAGTC-GAGAAGAATACAAAAGATGTAGTGGTGGACA 705
|||||||| || || |||||| |||| | ||||| |||||||||||||| || |||||
Sbjct 610 TGTGCAAGAACATGGA-GCCGAAGAGTCCG-GAAGACTACAAAAGATGTAGCGGCGGACA 667
Query 706 AGGAAAGG-TTGGGTCCAAGGTGACCATGGAGCAGAT-CTTTAAGCCTTCTCCTC-TTCT 762
||||| || ||| || |||||||| ||| | || || ||||||||| | ||||| || |
Sbjct 668 AGGAA-GGATTGCATCAAAGGTGACAATGAACCA-ATACTTTAAGCCATATCCTCCTT-T 724
Query 763 TAATCTGCCACCGGTTTCTTGGATA-ATCCGTG-GGATTACCATCAA-AACCACCAA 816
||||||||| || | |||||| || || |||| || | |||||||| ||| |||||
Sbjct 725 TAATCTGCCGCCACTATCTTGG-TACATTCGTGAGG-TCACCATCAAGAAC-ACCAA 778
> Ahg921415 jgi|Araly1|921415|scaffold_102696.1
Length=1048
Score = 250 bits (135), Expect = 1e-65
Identities = 274/338 (81%), Gaps = 22/338 (7%)
Strand=Plus/Plus
Query 234 CAGAGGAA-AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAAT 292
|||| ||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 106 CAGA-GAAGAAGAATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGAAAACCAAAAAT 164
Query 293 GGTCTTTGCCATATGAACATAGAATTTAAACTGGGATTA-CCTCCTGAAGGAGTCTACGA 351
||| |||| |||||||||||| |||||| | ||||| | |||||| |||||||||| ||
Sbjct 165 GGTATTTGTCATATGAACATAAAATTTACATTGGGAG-AGCCTCCTCAAGGAGTCTATGA 223
Query 352 GATGTTCACTAATCCAA-ACAAC-TATCCAGT-CTTCAAAAAGGACAAG-GCCGGGCGCC 407
|||| |||||||||||| | ||| || | | | |||| | |||||| | || || |
Sbjct 224 GATGCTCACTAATCCAAGA-AACATAAC-A-TACTTCGATTTTGACAAGCGTTGG-CGAC 279
Query 408 AACGTCTGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGG 467
|||| |||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||
Sbjct 280 AACGCCTGGAAAACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCACGG 339
Query 468 A-GATG-GAAAAAGATTTGT-ACTGGAACTTCCTTTTCATA-TCCAGAGCAATCCCGATA 523
| | || | ||| | | || | ||||| |||||||| | || || | ||||||||
Sbjct 340 ATG-TGAGGAAA-GCTCTGAGA-TGGAAGTTCCTTTTG-TGGTCTGGAACTATCCCGATT 395
Query 524 CATCTAGTTATCGATGAAAATCAT-AAGAATCTCACAG 560
|||||| ||||||||||||| ||| || ||||| ||||
Sbjct 396 CATCTAATTATCGATGAAAACCATCAA-AATCTTACAG 432
> Ahg921414 jgi|Araly1|921414|scaffold_102695.1
Length=301
Score = 219 bits (118), Expect = 4e-56
Identities = 234/289 (81%), Gaps = 12/289 (4%)
Strand=Plus/Plus
Query 561 CAAAATATAGGACAAAGAATATGATGTTTTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGG 620
||||||||| || |||||| |||| || ||||||| || |||||||| ||||||||||
Sbjct 1 CAAAATATATGAAAAAGAAAATGAAGTGCATGAAAGTATTCGAGGGTAGTTGGAAAGTGG 60
Query 621 TGCCAGACT-T-TGTAGATCAGGAACGCTTGTGCAAGTCAAGGTTGCCGAAAAGTCGAGA 678
||| ||| | ||||||||||| ||||| |||||||| || | | ||| |||| |||
Sbjct 61 AGCC--ACTATACGTAGATCAGGAGCGCTTTTGCAAGTCTAGATCGGTGAATAGTCAAGA 118
Query 679 AGAATACAAAAGATGTAGTGGTGGACAAGGAAAG-GTTGGGTCCAAGGTGACCATGGAGC 737
||| ||||||| |||||| || |||| ||| ||| ||| || |||||||| |||||||
Sbjct 119 AGAGTACAAAAAATGTAGCGGCGGACGAGG-AAGAATTGCATCAAAGGTGACAATGGAGC 177
Query 738 AGATCTTTAAGCCTTCTCCTCTTCTTAATCTGCCACCGGTTTCTTGGATAATCCGTGGGA 797
||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| |
Sbjct 178 TTATCTTCCAGCCTTCTTCTCTTCTTAATCTGCCACCGGTTTCTTGGATTATCCGTGGTA 237
Query 798 T-TA-C-C-ATCAAAACCACCAAGAT-TCTGCTCGAAGATATTCGAAAA 841
| || | | ||||||| |||||| || | |||| |||||| || |||||
Sbjct 238 TATATCACCATCAAAATCACCAAAATGT-TGCTAGAAGATCTTAGAAAA 285
> Ahg472613 jgi|Araly1|472613|fgenesh2_kg.1__2567__AT1G23510.1
Length=755
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 84 TTCCTGGATTTGGTAGCTGGATCAATCA 111
||||||||||||||||||||||||||||
Sbjct 11 TTCCTGGATTTGGTAGCTGGATCAATCA 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5