BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23670.2
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472628 jgi|Araly1|472628|fgenesh2_kg.1__2582__AT1G23670.2 1443 0.0
> Ahg472628 jgi|Araly1|472628|fgenesh2_kg.1__2582__AT1G23670.2
Length=936
Score = 1443 bits (781), Expect = 0.0
Identities = 889/940 (95%), Gaps = 11/940 (1%)
Strand=Plus/Plus
Query 3 TCGTTTGCTCTTGTTTTTATCAGGTAAGCATCATTTGTAGACTACATTTTCAGAGAGAAA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGTTTGCTCTTGTTTTTATCAGGTAAGCATCATTTGTAGACTACATTTTCAGAGAGAAA 60
Query 63 TGGGTATATTCCCTGGCTTGATCAATCAGAACACACAACAGCCTCCAGAGGTCGAGTCCA 122
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 61 TGGGTATATTTCCTGGTTTGATTAATCAGAACACACAACAGCCTCCAGAGGTCCAGTCCA 120
Query 123 AGAGATCTAGGAATGTTAAAACTAAGTCAGTGTCTGAGACTTATCCAGAGAACAGAGAAG 182
||| |||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||| |||
Sbjct 121 AGAAATCTGGGAATGTTAAACCTAAGTCAGTGTCAGAGACTTATCCTGAGGACAGACAAG 180
Query 183 AATTAAAGAAGCAATTAAAACTTTGGAGAGCTTCAGATAAGAAATCTCCATGGTATGATT 242
|||||||||||||| |||||||||||||||||||||| ||| | ||| ||||||||||||
Sbjct 181 AATTAAAGAAGCAACTAAAACTTTGGAGAGCTTCAGAGAAGGATTCTGCATGGTATGATT 240
Query 243 ATCCTCCTAAAGTT-AAGGTGACAAACGAAAAGGATCTTTACCATTTGAACATGAAATTT 301
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ATCCTCCTAAA-TTGAAGGTGACAAAGGAAAAGGATCTTTACCATTTGAACATGAAATTT 299
Query 302 ACAATAGGATTACCTCCTGAAGCAGTCTTCGATATACTCACTACTTATGAGAACCCATCA 361
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 ACAATAGGATTGCCTCCTGAAGCAGTCTTCGATATACTCACTAGTTATGAGAACCCATCA 359
Query 362 TACTTCACAATGATG-AAAAAGCGCCAA-ACTCTGGAACACGTATCAAGTAAAGTTTTTA 419
|| |||||||||||| |||||| | || | | |||||||||||||||||| |||||||
Sbjct 360 TATTTCACAATGATGAAAAAAG-G-GAAGCCCCAGGAACACGTATCAAGTAAGGTTTTTA 417
Query 420 GCGATCTTGGACCGACAGAGAAGCACGTGAGGGTGGAAAAAGCTGCTCCCTGGAGGTTCC 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCGATCTTGGACTGACAGAGAAGCACGTGAGGGTGGAAAAAGCTGCTCCCTGGAGGTTCC 477
Query 480 TTTGGTGGTCTGGATCTATCCCGGTACATCTAACTTTCAATGAGAGCCGGAAAGATTTCA 539
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 478 TTTGGTGGTCTGGATCTATCCCGGTACATCTAACTTTCAATGAGAGTCGAAAAGATTTCA 537
Query 540 GCACACTATATATGATTCCTAAAAAGAACGTGATGTTCATGAAAACGTTCTATGGTAAGT 599
|| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 GCCCACTATATATGATTCCGAAAAAGAACGTGATGTTCATGAAAAGGTTCTATGGTAAGT 597
Query 600 GGCAAATAGAGCCATGGTACGTAGATAACATGCGCTTTTGCAAGCCGAGGCTCCCAAAGA 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 GGCAAATAGAGCCATGGTACGTAGATAACATGCGCTTTTGCAAGCCTAGGCTCCCAAAGA 657
Query 660 ATCGAGAAGAATATAGACAATGTACCGGTGGAAAAGGATTGATTGGCTCGAGAGTGACAT 719
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 ATCGAGAAGAATATAGACAGTGTACTGGTGGAAAAGGATTGATTGGCTCGAGAGTGACAT 717
Query 720 TGGACCAGTATTTTCAGCCTTCTTCTTATCTTAACCTGCCACC-ACTTTCTTGGTACATC 778
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 718 TGGACCAGTCTTTTCAGCCTTCTTCTTATCTTAACCTGCCACCGA-TTTCTTGGTACATC 776
Query 779 CGTAGGGCCACCGTCAAGACCACCAAGGCTCTAATCGAAGATCTTCAAATTCAGGCCGCC 838
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 CGTAGGGCCACAGTCAAGACCACCAAGGCTCTAGTCGAAGATCTTCAAATTCAGGCCGCC 836
Query 839 GTTATCAGAAGCGTTTGAAACTCTTTCCAATCCGATATTTGCTAGTTATACCATTTTTAT 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 GTTATCAGAAGCGTTTGAAACTCTTTCCAATCCGATATTTGCTAGTTACGCCATTTTTAT 896
Query 899 ACAAACATTAACCTCAAATA-T-T-GGAATACTGTAAAAA 935
||||||||||| |||||||| | | |||||||||||||||
Sbjct 897 ACAAACATTAATCTCAAATAATATTGGAATACTGTAAAAA 936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5