BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G23680.1

Length=399
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921422 jgi|Araly1|921422|scaffold_102703.1                        231    2e-60


> Ahg921422 jgi|Araly1|921422|scaffold_102703.1
Length=808

 Score =  231 bits (125),  Expect = 2e-60
 Identities = 137/143 (96%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  158  GAAAGCAAATCAAGAAAACTTTTGATGAAGGATGGACCGAGGCGGATTGCGGAGGTAGAG  217
            |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  400  GAAAACAAATCAAGAAAACTTTTGCTGAAGGATGGACCGAGGCGGATTGCGGAGGTAGAG  459

Query  218  AAAGTTGTATCCTGGAAATTCCTTTTGTTTTCTGGAGCTCTCCCAACAAGTCTAATTGTC  277
            ||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||
Sbjct  460  AAAGTTGTATCCTGGAAATTCCTTTGGTTCTCTGGAGCTCTCCCAATAAGTCTAATTGTC  519

Query  278  GAAGACAACCAAAAAGATCTTAC  300
            ||||||||||||||| |||||||
Sbjct  520  GAAGACAACCAAAAATATCTTAC  542



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14308345875


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5