BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23680.1 Length=399 Score E Sequences producing significant alignments: (Bits) Value Ahg921422 jgi|Araly1|921422|scaffold_102703.1 231 2e-60 > Ahg921422 jgi|Araly1|921422|scaffold_102703.1 Length=808 Score = 231 bits (125), Expect = 2e-60 Identities = 137/143 (96%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 158 GAAAGCAAATCAAGAAAACTTTTGATGAAGGATGGACCGAGGCGGATTGCGGAGGTAGAG 217 |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 400 GAAAACAAATCAAGAAAACTTTTGCTGAAGGATGGACCGAGGCGGATTGCGGAGGTAGAG 459 Query 218 AAAGTTGTATCCTGGAAATTCCTTTTGTTTTCTGGAGCTCTCCCAACAAGTCTAATTGTC 277 ||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| Sbjct 460 AAAGTTGTATCCTGGAAATTCCTTTGGTTCTCTGGAGCTCTCCCAATAAGTCTAATTGTC 519 Query 278 GAAGACAACCAAAAAGATCTTAC 300 ||||||||||||||| ||||||| Sbjct 520 GAAGACAACCAAAAATATCTTAC 542 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14308345875 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5