BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23690.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008 1236 0.0
Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167 462 2e-129
Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006 401 5e-111
Ahg921413 jgi|Araly1|921413|scaffold_102694.1 381 6e-105
Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004 204 1e-51
Ahg921415 jgi|Araly1|921415|scaffold_102696.1 183 2e-45
> Ahg313228 jgi|Araly1|313228|fgenesh1_pm.C_scaffold_1002008
Length=822
Score = 1236 bits (669), Expect = 0.0
Identities = 772/823 (94%), Gaps = 2/823 (0%)
Strand=Plus/Plus
Query 136 ATGAGTGTATTTCGAAGATTTGTTGGCTGGATCAACCAGAACCTACAACAACAGCCTCTT 195
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1 ATGAATGTATTTCCAAGATTTGTTGGCTGGATCAACCAGAACCTGCAACAACAGCCTGTT 60
Query 196 AAGGATGAGTCCAAGAGATCTGAGAATGTTGACTCTAATTCAGCGACAGAGAATGATACT 255
|||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||
Sbjct 61 CAGGATGAGTCCAAGAGATCTGAGAATGTCGACTCTAATTCAGTGTCAGAGAAAGATACT 120
Query 256 AATAAACGGGCATTTTATTATGACAAAGCTGAGGCTAAGAAGCAAGGAAAACTTTGGAGA 315
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATAAACAGGAATTTTATTATGACAAAGCTGAGGCTAAGAAGCAAGGAAAACTTTGGAGA 180
Query 316 GCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTCCTAAGGTCAAGGTGACAACAAAA 375
|||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct 181 GCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTGCTAAAGTGAAGGTGACAACAAAG 240
Query 376 AAGGGTCTTTGCCACATGCACATAGAGTTGACAGTAGGATTGCCTCCGGAAGGGGTCTAT 435
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 241 AAGGGTCTTTGCCACATGCACATAGAATTGACAGTAGGATTGCCTCCTGAAGGAGTCTAC 300
Query 436 GATTTGTTCGCTAATCCGAACGACTTTCCATTCTTCAGGATCGACAACGAGACTGGGCGC 495
||||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 301 GATTTGTTCGCTAATCCAAACGACTTTCCATTCTTCAGGATTGATAATGAGACTGGGCGC 360
Query 496 GAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAAGATGGACCGAGGCAGAGCGCG 555
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 361 GAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAGGATGGACCGAGGCAGATCGTG 420
Query 556 CGGTTGGAGAAAGCTCTGACCTGGGACGTTCTTTGGTGGTGTGGAGCTTTTCCATTTACT 615
| ||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||
Sbjct 421 CAGTTGGAGAAAGCTGTGACCTGGGACTTTCTTTTGTGGTGTGGAGCTTTTCCGTTTACT 480
Query 616 CTAATTGTTGATGAAAACCaaaaaaaCTTTAGAGGAAGATATATGAAAGAGAAAATGAAG 675
|||||||||||||||||||||||| | ||||||| || ||||| |||| ||||||||| |
Sbjct 481 CTAATTGTTGATGAAAACCAAAAAGATTTTAGAGCAAAATATAAGAAAAAGAAAATGATG 540
Query 676 TTTATGAAA-TATTTTGAGGGTAAATGGAAAATAGAGCCACTATACGTAGATTCAGAACG 734
|| |||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 541 TTCATGAAAGT-TTTTGAGGGTAAATGGAAAATAGAGTCACTGTACGTAGATTCAGAACG 599
Query 735 CTTGTGCAAGGACAGAAAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGCGGCGGAGA 794
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 600 CTTGTGCAAGGACAGAGAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGTGGCGGACA 659
Query 795 AGGAAAGGTTGCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTCTTCTTAA 854
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGAAAAGTTGCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTCTTCTTAA 719
Query 855 TCTACCACCACTTTCTTGGTACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCT 914
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 TATACCACCGCTTTCTTGGTACATTCGTGGGATCACCATCAAAACCACCAAAAAACTGCT 779
Query 915 CATATTGATTCAAAATGCAAGTATCATGTTCCGAGACGCTTGA 957
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAAATTGATTCAAAATGCAAGTATCATGTTCCGAGACGCTTGA 822
> Ahg335602 jgi|Araly1|335602|fgenesh1_pg.C_scaffold_1002167
Length=795
Score = 462 bits (250), Expect = 2e-129
Identities = 528/659 (80%), Gaps = 31/659 (5%)
Strand=Plus/Plus
Query 271 TATTATGACAAAGCTGAGGCT-AAGAAGCAAGGAAAACTTTGGAGAGCTGCAGAGAAGAA 329
||||||||| |||||||| | |||||| || |||||||||||||||||||||||||||
Sbjct 112 TATTATGACTTAGCTGAGG-TAAAGAAGGAATCAAAACTTTGGAGAGCTGCAGAGAAGAA 170
Query 330 GAAACCATGGTATGATGCTCCTCCTAAGGTCAAGGTGACAACAAAAAAGGGTCTTTGCCA 389
| | |||||||||||||| || ||||||| ||||||||||||||||| |||||||||||
Sbjct 171 GCATCCATGGTATGATGCACCAGCTAAGGTGAAGGTGACAACAAAAAAAGGTCTTTGCCA 230
Query 390 CATGCACATAGAGTTGACAGTAGGATTGCCTCCGGAAGGGGTCTATGATTTGTTCGCTAA 449
|| ||||||| || | | | ||||||||||| |||| ||||| || ||||| ||||
Sbjct 231 TTTGAACATAGAATTCAAATTGGGATTGCCTCCTGAAGCAGTCTACGAGATGTTCACTAA 290
Query 450 TCCGAACGACTTTCCATTCTTCAG-GATCGACAACGAGACTGGGCGCGAACTTTTGGAAA 508
||| ||| ||||||| ||||||| || ||||| | ||| |||||| ||| ||||||||
Sbjct 291 TCCAAACAACTTTCCTTTCTTCAAAGAG-GACAA-G-GAC-GGGCGCCAACGTTTGGAAA 346
Query 509 ACAAATCAAGAAAGGTTTTGATGAAAGATGGACCGAGGCAGAGCGC-GCGGTTGGAGAAA 567
||||||||| ||||||||||| ||| |||||||||||||||| | | | ||| ||| |||
Sbjct 347 ACAAATCAACAAAGGTTTTGAAGAAGGATGGACCGAGGCAGACCACAGAGGT-GGAAAAA 405
Query 568 GCTCTGACCTGGGACGTTCTTTGGTGGTGTGGAGCTTTTCCATTTAC-TCTAATTGTTGA 626
||| || ||||| || ||||| |||| | ||||| | | ||| | || ||| || | |
Sbjct 406 GCTTTGTCCTGGAACTTTCTTGGGTGTTCTGGAGATATCCCAAT-ACATCTTATAATCCA 464
Query 627 TGAAAACCaaaaaaaCTTTAGAG-G-AAGATATATGA-AAGAGAAAATGAAGTTTA-TGA 682
|||||||| || || | || | | || ||||| || || ||||||||| |||| |||
Sbjct 465 CGAAAACCATAAGAA-TCTA-ACTGCAAAATATACGACAA-AGAAAATGAT-TTTAATGA 520
Query 683 AA-TATTTTGAGGGTAAATGGAAAATAGAGCCACTA-TACGTAGATTCAG-AACGCTTGT 739
|| | || ||||||| |||||| | |||||| | ||||||||| ||| |||||||||
Sbjct 521 AAGTGTTC-GAGGGTAGCTGGAAAGTTGAGCCAG-ACTACGTAGAT-CAGGAACGCTTGT 577
Query 740 GCAAGGACA-GAAAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGCGGCGGAGAAGGA 798
||||| || | ||| || |||||| |||||||||||| ||||||||| ||| |||||
Sbjct 578 GCAAGC-CAAGGTTGCCAAAAAGTCGAAAAGAATACAAAATATGTAGCGGTGGACAAGGA 636
Query 799 AAGGTTGCATCGAAAGTGACAATGGACCA-ATACTTCCAACCTTATTTTCTTCTTAATCT 857
|| |||| |||||||| ||||||| || || ||| | |||| || ||||||||||||
Sbjct 637 AAAGTTGGGTCGAAAGTTTCAATGGAGCAGATTTTTC-AGCCTTCTTCTCTTCTTAATCT 695
Query 858 ACCACCACTTTCTTGG-TACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCTC 915
|||||| |||| ||| | |||| ||||||||||||||| ||||||||| | |||||||
Sbjct 696 ACCACCGGTTTCATGGAT-CATTTGTGGGATCACCATCAGAACCACCAAGATTCTGCTC 753
> Ahg313226 jgi|Araly1|313226|fgenesh1_pm.C_scaffold_1002006
Length=678
Score = 401 bits (217), Expect = 5e-111
Identities = 363/433 (84%), Gaps = 12/433 (3%)
Strand=Plus/Plus
Query 510 CAAATCAAGAAAGGTTTTGATGAAAGATGGACCGAGGCAGAGCGCGCGGTTGGAGAAAGC 569
|||||||||||||||||||| ||| |||||||||||||||| || | | ||| |||||||
Sbjct 234 CAAATCAAGAAAGGTTTTGAAGAAGGATGGACCGAGGCAGATCGTGAGATTGAAGAAAGC 293
Query 570 TCTGACCTGGGACGTTCTTTGGTGGTGTGGAGCTTTTCCATTTAC-TCTAATTGTTGATG 628
| || | |||||| |||||||||||| ||||| |||||| ||| ||||||||| ||||
Sbjct 294 TGTGGCTTGGGACTTTCTTTGGTGGTCTGGAGATTTTCC-GATACATCTAATTGTCGATG 352
Query 629 AAAACCaaaaaa-aCT-TTAGAGGAAGATATATGAAAGAGAAAATGAAGTTTATGAAATA 686
||| ||||||| | | ||| || || ||||| |||||||||||||| ||| ||||||
Sbjct 353 TAAA-CAAAAAAGA-TCTTACAGCAAAATATAAGAAAGAGAAAATGATGTTCATGAAA-G 409
Query 687 TTTT-GAGGGTAAATGGAAAATAGAGCCACTATACGTAGATTCAGAACGCTTGTGCAAGG 745
|||| || ||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 410 TTTTCGAAGGTAACTGGAAAATAGAGCCACTATACGTAGATTCAGTCCGCTTGTGCAAGC 469
Query 746 ACA-GAAAGCCGAAGAGTCGAGAAGAATACAAAAGATGTAGCGGCGGAGAAGGAAAGGTT 804
| | | | ||| ||||||| | |||||||||||| |||||| |||||| |||||| ||||
Sbjct 470 ATAAGGA-GCCTAAGAGTCTACAAGAATACAAAACATGTAGTGGCGGACAAGGAAGGGTT 528
Query 805 GCATCGAAAGTGACAATGGACCAATACTTCCAACCTTATTTTC-TTCTTAATCTACCACC 863
||||||||||| |||||||||||||| || || || ||| || || ||||||| |||||
Sbjct 529 GCATCGAAAGTAACAATGGACCAATATTTTCAGCCATATACTCCTT-TTAATCTGCCACC 587
Query 864 ACTTTCTTGGTACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCTCATATTGAT 923
| ||||||||| |||||||| |||||||||| |||||||||| |||||||| | || |
Sbjct 588 AATTTCTTGGTTCATTCGTGATATCACCATCAGGACCACCAAAACTCTGCTCAAAATGCT 647
Query 924 TCAAAATGCAAGT 936
|||| |||| |||
Sbjct 648 TCAACATGCGAGT 660
> Ahg921413 jgi|Araly1|921413|scaffold_102694.1
Length=716
Score = 381 bits (206), Expect = 6e-105
Identities = 451/567 (80%), Gaps = 26/567 (5%)
Strand=Plus/Plus
Query 299 AAGGAAAACTTTGGAGAGCTGCAGAGAAGAAGAAACCATGGTATGATGCTCCTCCTAAGG 358
|||||||||||||||||| ||||||||||||| | ||||||| |||||| |||||||| |
Sbjct 58 AAGGAAAACTTTGGAGAGATGCAGAGAAGAAGCATCCATGGTTTGATGCCCCTCCTAAAG 117
Query 359 TCAAGGTGACAACAAAAAAGGGTCTTTGCCACATGCACATAGAGTTGACAGTAGGATTGC 418
| ||||||||||||||||||||||||||||| ||| || || | ||||| | |||||||
Sbjct 118 TGAAGGTGACAACAAAAAAGGGTCTTTGCCATATGTACGTAAAAATGACATTTGGATTGC 177
Query 419 CTCCGGAAG--GGGTCTATGA-TTTGTTCGCTAATCCGAACGACTTTCCATTCTTCAGGA 475
|||| ||| || ||||| || ||| ||||||| ||| |||| ||| |||||| |
Sbjct 178 CTCC--AAGATCAGTTTATGAGCTT-TTCACTAATCCAAACAACTTACCACTCTTCA-G- 232
Query 476 TCGACAACGAGACTGGGCGCGAACTTTTGGAAAACAAATCAAGAAAGGTTTTGATGAAAG 535
| ||| | || || ||||| ||||| ||| ||||||| |||||||||||||| || |
Sbjct 233 T-GAC-A--AGTCTTGGCGCCAACTTCTGGTAAACAAAAGAAGAAAGGTTTTGAAGAGGG 288
Query 536 ATGGACCGAGGCAG--AGCGCGCGGTTGGAGAAAGCTCTGACCTGGGACGTT-CTTTGGT 592
|||| ||||||||| || | | || | ||||| | | || ||||||| || || ||||
Sbjct 289 ATGGGCCGAGGCAGATAGTG-GAGG-TAGAGAAGGTTGTGGCCTGGGA-TTTCCTGTGGT 345
Query 593 GGTGTGGAGCTTTTCCAT-TTACTCTAATTGTTGATGAAAACCa-aaaaaaCTTTAGAGG 650
||| ||||| | | || | | | |||||||| |||||||| | ||| | | ||| |||
Sbjct 346 GGTCTGGAGGTATGCC-TATAAATCTAATTGCCGATGAAAATGAGAAAGATC-TTACAGG 403
Query 651 AAGATATATGAAAGAGAAAATGAAGTTTATGAAATAT-TTTGAGGGTAAATGGAAAATAG 709
|| ||||| |||| | ||||||||||| |||||| | || ||||||| | ||| | |
Sbjct 404 AAAATATAAGAAACAAAAAATGAAGTTCATGAAA-GTGTTCGAGGGTAGCTATAAAGTGG 462
Query 710 AGCCACTATACGTAGATTCAGAACGCTTGTGCAAGGAC-AGAAAGCCGAAGAGTCGAGAA 768
||||| | || |||||||| ||| ||||||||||| || || |||| ||||||| ||||
Sbjct 463 AGCCAATTTATGTAGATTCCGAAAGCTTGTGCAAGAACAAG-GAGCCAAAGAGTCCAGAA 521
Query 769 GAATACAAAAGATGTAGCGGCGGAGAAGGAAAGGTTGCATCGAAAGTGACAATGGACCAA 828
|||||||||| |||||| || ||| |||||||| ||||||||||||||||||||||||||
Sbjct 522 GAATACAAAAAATGTAGTGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGACCAA 581
Query 829 TACTTCCAACCTTATTTTCTTCTTAAT 855
||||| || || ||| |||| |||||
Sbjct 582 TACTTTCAGCCATATCCTCTTTTTAAT 608
> Ahg313224 jgi|Araly1|313224|fgenesh1_pm.C_scaffold_1002004
Length=882
Score = 204 bits (110), Expect = 1e-51
Identities = 179/211 (85%), Gaps = 10/211 (5%)
Strand=Plus/Plus
Query 709 GAGCCACTATACGTAGATTCAGAACGCTTGTGCAAGGACA-GAAAGCCGAAGAGTCG-AG 766
|||||||||||||||||||||| ||| || |||||| ||| | | |||||||||| | ||
Sbjct 580 GAGCCACTATACGTAGATTCAGTACGGTTATGCAAGAACAAGGA-GCCGAAGAGT-GTAG 637
Query 767 AAGAATACA-AAAGATGTAGCGGCGGAGAAGGAAAGGTTGCATCGAAAGTGACAATGGAC 825
||| ||||| ||| ||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 638 AAGTATACAGAAA-ATGTAGCGGTGGACAAGGAAAGATTGCATCGAAAGTGACAATGGAC 696
Query 826 CAATACTTCCAACCTTATTTTC-TTCTTAATCTACCACCACTTTCTTGGTACATTCGTGG 884
|||||||| || || ||| || || ||||||| || ||||| ||||||| ||||||||
Sbjct 697 CAATACTTTCAGCCATATCCTCCTT-TTAATCTGCCGCCACTATCTTGGTTCATTCGTGA 755
Query 885 GATCACCATCAA-AACCACCAAAAATCTGCT 914
||||||||||| || ||||||||| ||||
Sbjct 756 TATCACCATCAAGAAT-ACCAAAAATGTGCT 785
> Ahg921415 jgi|Araly1|921415|scaffold_102696.1
Length=1048
Score = 183 bits (99), Expect = 2e-45
Identities = 182/221 (82%), Gaps = 10/221 (5%)
Strand=Plus/Plus
Query 700 TGGAAAATAGAGCCACTATACGTAGATTCAGAACGCTTGTGCAAGGACAGAAAGCCGAAG 759
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 438 TGGAAAATAGACCCACTATACGTAGATTCAGAACGCTTGTGCAAGCACATTGAGCCGAAG 497
Query 760 AGTC-GAGAAGAATACAAAAGATGTAGCGGCGGAGAAGGAAAGG-TTGCATCGAAAGTGA 817
| || | ||||||||||||||||||||||| ||| | |||| || |||||||||| |||
Sbjct 498 AATCCG-GAAGAATACAAAAGATGTAGCGGTGGACAGGGAA-GGATTGCATCGAAGGTGG 555
Query 818 CAATGGACC-AATACTTCCAACCTTATTTTCTTCTTAATCTACCACCACTTTCTTG-GT- 874
||||||| ||| ||| || |||| || |||||||||| | ||||| |||||| ||
Sbjct 556 CAATGGAGATAAT-CTTTCAGCCTTCTTCTCTTCTTAATGTGCCACCGGTTTCTTTTGTT 614
Query 875 ACATTCGTGGGATCACCATCAAAACCACCAAAAATCTGCTC 915
|| ||| |||| ||||||||| ||||||| | | |||||
Sbjct 615 ACC--CGTTGGATTACCATCAAAGCCACCAAGATTTTGCTC 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5