BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23700.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921424 jgi|Araly1|921424|scaffold_102705.1 693 0.0
> Ahg921424 jgi|Araly1|921424|scaffold_102705.1
Length=1220
Score = 693 bits (375), Expect = 0.0
Identities = 537/610 (88%), Gaps = 32/610 (5%)
Strand=Plus/Plus
Query 488 GTGTGGAAAGGATGCGTACTAGTTCTGAGAATACTTTTGTTGGAAATCCACGCCGGATGG 547
||||||||||||||| |||| |||||| ||||||||||||||||| |||| || |||| |
Sbjct 476 GTGTGGAAAGGATGCCTACTTGTTCTGGGAATACTTTTGTTGGAACTCCATGCTGGATCG 535
Query 548 CACCTGAGAAGGATATGCAGCAAGTTGATGGCTATGATTTCAAAGTGGATATCTGGTCGT 607
|||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 536 CACCTGAGGAGGATACGCAGCAAGTTGATGGCTATGATTTCAAATTGGATATCTGGTCGT 595
Query 608 TTGGCATGACTGCCCTGGAACTTGCCCATGGTCATT---CA----C---CTA--C-C--A 652
|||||||||||||||||||||||||||||||||||| || | || | | |
Sbjct 596 TTGGCATGACTGCCCTGGAACTTGCCCATGGTCATTCCCCATTTTCAAAATATCCACATA 655
Query 653 C---GGTGCTACCATTGAACTTACAAAATTCTCCCTT-TCCTAACTATGAAGAAGACACG 708
| |||||||||||||| ||||||||||||| |||| |||| ||||||||||||| |
Sbjct 656 CGGTGGTGCTACCATTGACCTTACAAAATTCT-CCTTGTCCTGACTATGAAGAAGATAAT 714
Query 709 AAATTCTCTAAGTCTTTTAGAGAGTTGGTCGCAGCTTGCTTGATAGAAGATCCAGAAAAA 768
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 715 AAATTCTCTAAGTCTTTTAGAGAGTTGGTCGCAGCTTGCTTGATAAAAGATTTAGAAAAA 774
Query 769 CGTCCGACCGCTTCACAACTACTGGAATATCCGTTCTTACAGCAAACTCTTTCTACTGAA 828
||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 775 CGTCCGACCGCTTCAAAACTACTGGAATATCCATTCTTACAGCATACTCTTTCTACTGAA 834
Query 829 TACTTGGCTAGTAC-ATTTCTTGATGGCCTCT-CTCCGCTTGGTGAGCGTTATAGAAAGC 886
|||||||||||||| ||| |||||| |||||| | |||||||||||||||| ||||||||
Sbjct 835 TACTTGGCTAGTACGATT-CTTGATAGCCTCTAC-CCGCTTGGTGAGCGTTTTAGAAAGC 892
Query 887 TGAAGGAGGAAAAGGCCAAGTTGGTTAAAGGTGTAGATGGTAACAAG-GAGAAAGTATCT 945
||||||||||| ||||||||||||||||| || |||||||||||| | |||||| |||||
Sbjct 893 TGAAGGAGGAAGAGGCCAAGTTGGTTAAACGTATAGATGGTAACA-GTGAGAAATTATCT 951
Query 946 CAGGAAAATGTTGAAGCGCTGCTGA--T--GG-AA-CCTGCTAGTCTTGTGAACCCTGTT 999
|||| || |||||| |||||||| | || || |||||||||| |||||||||||||
Sbjct 952 CAGGTAACCATTGAAGGGCTGCTGACCTTTGGGAAACCTGCTAGTCCTGTGAACCCTGTT 1011
Query 1000 TCTTGTGATACTGCTCAAGTCCTCCCAATCTTACAGAATATCCTGATCCAAAATGATATC 1059
||||| || |||||||| |||||||||| ||||||||| |||||||||| |||||||||
Sbjct 1012 TCTTGCAATGCTGCTCAAATCCTCCCAATGTTACAGAATCTCCTGATCCAGAATGATATC 1071
Query 1060 CAAAGGGAAA 1069
||||||||||
Sbjct 1072 CAAAGGGAAA 1081
Score = 645 bits (349), Expect = 0.0
Identities = 423/459 (92%), Gaps = 4/459 (1%)
Strand=Plus/Plus
Query 1 ATGACGAGTTCACCGGAAACGAGATTTCCTCTGGTTGCGAAAGATTACGAGATTTTAGAA 60
|||||||| ||| ||| ||| | ||||||||||| |||||||||||||||| |||||| |
Sbjct 22 ATGACGAGCTCATCGGGAACAAAATTTCCTCTGGATGCGAAAGATTACGAGCTTTTAG-A 80
Query 61 GA-GATAGGCGATGGTGTTTACAGAGCTCGATGCATTCTACTTGATGAAATTGTAGCCAT 119
|| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 81 GAGGATTGGCGATGGTGTTTACAGAGCTCGATGCATTCTACTTGATGAGATTGTGGCCAT 140
Query 120 CAAGATCTGGAACCTTGAAAAATGCACCAACGATCTGGAAACCATAAGGAAAGAAGTTCA 179
||||||||||||||||||||||||||| || ||| |||||||||||| ||||||||||||
Sbjct 141 CAAGATCTGGAACCTTGAAAAATGCACTAAAGATTTGGAAACCATAAAGAAAGAAGTTCA 200
Query 180 TAGATTGAGCTTAATTGATCATCCAAATCTATTGAGGGT-GCATTGCTCTTTCATAGATA 238
||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 201 TAGATTGAGCTCAATTGATCATCCAAATCTATTGA-GGTCGCATTGCTCTTTCATAGATG 259
Query 239 GTAGCAGCTTGTGGATTGTGATGCCTTTTATGTCGTGCGGCTCTTCCTTGAACATAATGA 298
||| ||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||
Sbjct 260 GTACCAGCTTGTGGATTGTGATGCCTTACATGTCGTGTGGCTCCTGCTTGAACATAATGA 319
Query 299 AATCAGTCTATCCAAATGGTCTTGAGGAACCTGTAATTGCTATATTGTTGCGGGAGATTC 358
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 320 AATCAGTCTATCCAAATGGTCTTGAGGAGCCTGTAGTTGCTATATTTTTGCGGGAGATTC 379
Query 359 TTAAAGCTCTTGTTTACCTTCATGGACTAGGACACATCCATCGAAATGTTAAGGCTGGGA 418
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 380 TAAAAGCTCTTGTTTACCTTCATGGACTAGGATACATCCATGGAAATGTTAAGGCCGGGA 439
Query 419 ATGTACTGGTTGACTCAGAAGGAACTGTTAAGCTCGGTG 457
|| ||||||| ||||||||||||||||||||||| ||||
Sbjct 440 ATATACTGGTAGACTCAGAAGGAACTGTTAAGCTTGGTG 478
Score = 268 bits (145), Expect = 6e-71
Identities = 185/204 (91%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 1091 AACCTGCTATTCTTGTGAACCCTGTTTCTTGTGATACTGCTCAAGTCCTCCCAATCG-TA 1149
||||||||| || |||||||||||||||||| || |||||||| |||||||||| | ||
Sbjct 986 AACCTGCTAGTCCTGTGAACCCTGTTTCTTGCAATGCTGCTCAAATCCTCCCAAT-GTTA 1044
Query 1150 CAGAATATCCTGATCCAGAATGATATCCAAAGGAAAAGGTTAATCGGTTTAATGCAACTC 1209
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1045 CAGAATCTCCTGATCCAGAATGATATCCAAAGGGAAAGGTTAATCAGTTTAATGCAACTC 1104
Query 1210 TGTGATCCAACTGCTGGTAAGTTTGCTGTTCTATCA-CTAGAATTTGCATCTTCTCTATG 1268
| |||||||||||||||||||||||||||||| || | ||| |||||||||||||| ||
Sbjct 1105 TATGATCCAACTGCTGGTAAGTTTGCTGTTCTGTCGGC-AGATTTTGCATCTTCTCTGTG 1163
Query 1269 TTACAAGTTCCATGACCTGATCTT 1292
||||||||||| ||||||||||||
Sbjct 1164 TTACAAGTTCCGTGACCTGATCTT 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5