BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23710.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472633 jgi|Araly1|472633|fgenesh2_kg.1__2587__AT1G23710.1 1437 0.0
> Ahg472633 jgi|Araly1|472633|fgenesh2_kg.1__2587__AT1G23710.1
Length=1111
Score = 1437 bits (778), Expect = 0.0
Identities = 1021/1129 (90%), Gaps = 53/1129 (5%)
Strand=Plus/Plus
Query 75 AAGAGTAACGGTGAGGTTTGGATCTAATCGAATCAACGATGGAGGTTGCTTTTCCATCTT 134
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAGAGTAACGGTGAGGTTTGGATCTAATCG-ATCAACGATGGAGGTTGCTTTTCCATCTT 59
Query 135 CGCCGCCGGTGAAATGCATCGCCGATGAAAGATTAACAGAGATCTCCATGGATTTCACCA 194
| ||||||| ||||||||||| ||||| ||||||| || || ||||| ||||||||||
Sbjct 60 CACCGCCGGCGAAATGCATCGGTGATGACCGATTAACCGAAATTTCCATAGATTTCACCA 119
Query 195 AATTAGGATTCCCAGAAGAAGATGAAGAAATTAAAAAATTGGAGAGATCGTGGAGT-AAG 253
|||||||||||||||||| | | |||||||||||||||||||| |||||||||||| ||
Sbjct 120 AATTAGGATTCCCAGAAG-A-A-GAAGAAATTAAAAAATTGGAAAGATCGTGGAGTCAA- 175
Query 254 CTCGAAGAATCCGTCGAATTT-----A-ACGAAGACGAT---g-a-a-gaagaagaagaa 301
||||||||||||||||||||| | ||||||||||| | | | ||||||||||||
Sbjct 176 CTCGAAGAATCCGTCGAATTTAACGAAGACGAAGACGATGAAGAAGATGAAGAAGAAGAA 235
Query 302 gaGTTTTCGTTTGCTTGTGTAAACGGAGAAGGATCTCCAATTACCGCTGATGAAGCTTTT 361
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 236 GAGTTTTCGTTTGCTTGTGTAAACGGAGAAGGATCTCCAATAACAGCTGATGAAGCTTTC 295
Query 362 GAAGATGGTCAGATCCGTCCTGTGTTTCCTCTGTTTAACCGTGATCTTCTCTTCGAGTAC 421
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 296 GAAGATGGTCAGATCCGTCCTGTGTTTCCTCTGTTTAACCGCGATCTTCTTTTCGATTAC 355
Query 422 GAAAACGAAGATGACAAAAACGACAACGTTTCGGTCACCGACGAGAACAGACCGCGTCTT 481
|||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 356 GAAAACGACGATGACAAAAGCGACGACGTTTCGGTCACCGACGAGAACAGACCACGTCTT 415
Query 482 AGAAAATTATTTGTTGAGGATCGTAACGGTAACGGTGACGGAGAGGAGACGGAGGGTTCT 541
||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||
Sbjct 416 CGAAAATTATTTGTTGAGGATCGTAACGGTGACGGTGACGGCGAAGAGACGGAGGATTCT 475
Query 542 GAGAAAGAACCGTTGGGACCGTATTGTTCGTGGACAGGAGGAACGGTTGCAGAAGCGTCG 601
|||||||||||||| |||||||||||||| ||| |||| ||||| ||||| |||||||||
Sbjct 476 GAGAAAGAACCGTTAGGACCGTATTGTTCTTGGTCAGGTGGAACCGTTGCGGAAGCGTCG 535
Query 602 CCGGAGACTTGCCGGAAAAGTAATTCGACGGGATTCTCAAAGCTTTGGAGATTTAGAGAT 661
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 536 CCGGAGACTTGCCGGAAAAGTAACTCGACGGGATTTTCTAAGCTTTGGAGATTTAGAGAT 595
Query 662 CTTGTTTTGAGAAGTAACAGTGATGGAAGAGACGCGTTTGTTTTCTTGAATAATAGTAA- 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 596 CTTGTTTTGAGAAGTAACAGTGATGGAAGAGACGCGTTTGTTTTCTTGAGTAATAATAAC 655
Query 721 ----T-G---ACAAGACTCGGACTCGGTCTTCTTCGTCGTCGTCGTCTACGGCGGCGGAG 772
| | |||||||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 656 AACGTCGGTGACAAGACTAGGACTCGGTCTTCTTCGTCGTCGTC-T--ACGGCGGCGGAG 712
Query 773 GAGAATGATAAGAAGGTAATAA---CAGAGAAGAAAAAGGGGAAGGAGAAAACTTCGACG 829
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 713 GAGAATGATAAGAAGGTAATAATAACAGAGAAGAAAAAGGGGAAGGAGAAAACAACGACG 772
Query 830 TCGTCGGAGACGAAGAAGAAGACGACGACGACTAAATCGGCGCATGAGAAGCTATACATG 889
||| | || ||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 773 TCG--G-AGGCGAAGAAGAAGACGATGACGA--AA-TCGGCGCATGAGAAGCTTTACATG 826
Query 890 AGAAACAGAGCGATGAAGGAAGAAGTGAAACACAGATCGTATCTTCCGTACAAACAAGTC 949
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AGAAACAGAGCGATGAAGGAAGAAGTGAAACACAGATCGTATCTTCCGTACAAACAAGTT 886
Query 950 GGGTTCTTCACTAATGTGAATGGTCTTAGCAGAAATATTCATCCTTTCTGAC-AAAAATA 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 887 GGGTTCTTCACTAATGTGAATGGTCTTAGCAGAAATATTCATCCTTTCTGACCAAAAAAA 946
Query 1009 AAAAT-TAAGTTTGGTTTTTGGGTGAtttttttttgtttttt--GG-TTATGTaaaaaaa 1064
|||| ||||||||||||||||||||||||||||| |||||| || |||| ||||||||
Sbjct 947 AAAAACTAAGTTTGGTTTTTGGGTGATTTTTTTTTTTTTTTTTTGGGTTATATAAAAAAA 1006
Query 1065 aaaTTTAATTTAGTACTCTTCTT-TGGGGTCACTTCTGCTTGGTAGATT-GAAATTTTAA 1122
|| ||||||||||||||| | |||| | ||| ||| |||||||||| | | ||||||
Sbjct 1007 G--TT-AATTTAGTACTCTTCGTATGGG-TGACTACTGTTTGGTAGATTTGGA-TTTTAA 1061
Query 1123 ATGATTGCAGAAAGGTGTACTGtttttttt--CACTATTTTCTGGTGTT 1169
||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1062 ATGATAGCAGAAAGGTGTACTGTTTTTTTTTTCACTATTTTCTGGTGTT 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5