BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23730.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912233 jgi|Araly1|912233|Al_scaffold_0001_2487 1225 0.0
> Ahg912233 jgi|Araly1|912233|Al_scaffold_0001_2487
Length=777
Score = 1225 bits (663), Expect = 0.0
Identities = 739/777 (95%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 90 ATGTCGACAGAGTCGTACGAAGACGCCATTAAAAGACTCGGAGAGCTTCTCAGTAAGAAA 149
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGTCGACAGAGTCGTACGAAGATGCCATTAAAAGACTAGGAGAGCTTCTCAGTAAGAAA 60
Query 150 TCGGATCTCGGGAACGTGGCAGCCGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAA 209
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGATCTCGGGAACGTGGCAGCTGCAAAGATCAAGAAGTTAACGGATGAGTTAGAGGAA 120
Query 210 CTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTCTCCATTTCAAG 269
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 CTTGATTCCAACAAGTTAGATGCCGTAGAACGAATCAAATCCGGATTTATCCATTTCAAG 180
Query 270 ACTAATAATTATGAGAAGAATCCTACTTTGTACAATTCACTTGCCAAGAGCCAGACCCCC 329
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 181 ACTAATAATTATGAGAAGAATCCTACTTTGCACAATGCACTTGCCAAGAGCCAGAGCCCC 240
Query 330 AAGTTTTTGGTGTTTGCTTGTGCGGATTCACGAGTTAGTCCATCTCACATCTTGAATTTC 389
|||||| ||||||||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 241 AAGTTTCTGGTGTTTGCTTGTGCGGATTCACGAGTTAGCCCTTCACACATCTTGAACTTC 300
Query 390 CAACTTGGGGAAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG 449
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACTTGGGGAAGCCTTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG 360
Query 450 ACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTCAACGTGGAG 509
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 361 ACAAAACACTCTAATGTTGGTGCCGCCCTTGAATATCCAATTACAGTCCTTAACGTGGAG 420
Query 510 AACATTCTTGTTATTGGACACAGCTGTTGTGGTGGAATAAAGGGACTCATGGCCATTGAA 569
|||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 421 AACATTCTGGTGATTGGTCACAGCTGTTGTGGTGGAATAAAGGGACTTATGGCCATTGAG 480
Query 570 GATAATACAGCTCCCACTAAGACCGAGTTCATAGAAAACTGGATCCAGATCTGTGCACCG 629
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 481 GATGATACAGCTCCCACTAAGACAGAGTTCATAGAAAACTGGATCCAAATCTGTGCACCG 540
Query 630 GCCAAGAACAGGATCAAGCAGGATTGTAAAGACCTAAGCTTTGAAGATCAGTGCACCAAC 689
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 541 GCCAAGAACAGGATCAAGCAGGAATGCAAAGACCTAAGCTTTGAAGATCAGTGCACCAAC 600
Query 690 TGTGAGAAGGAAGCCGTGAACGTGTCCTTGGGGAATCTTTTGTCTTACCCATTCGTGAGA 749
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 TGTGAGAAGGAAGCTGTGAACGTGTCCTTGGGGAATCTGTTGTCTTACCCATTCGTGAGA 660
Query 750 GAAAGAGTGGTGAAGAACAAGCTTGCCATAAGAGGAGCTCACTATGATTTCGTAAAAGGA 809
|| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 661 GATAGAGTAGTGAAGAACAAGCTTTCCATAAGAGGAGCTCACTACGATTTCGTGAAAGGA 720
Query 810 ACGTTTGATCTTTGGGAACTTGACTTCAAGACTACCCCTGCCTTTGCCTTGTCTTAA 866
|| |||||||||||||| || ||||||||||| |||||||||||||| |||||||||
Sbjct 721 ACTTTTGATCTTTGGGAGCTCGACTTCAAGACCACCCCTGCCTTTGCTTTGTCTTAA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5