BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23740.1
Length=1384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472635 jgi|Araly1|472635|fgenesh2_kg.1__2589__AT1G23740.1 1884 0.0
> Ahg472635 jgi|Araly1|472635|fgenesh2_kg.1__2589__AT1G23740.1
Length=1372
Score = 1884 bits (1020), Expect = 0.0
Identities = 1278/1397 (91%), Gaps = 39/1397 (3%)
Strand=Plus/Plus
Query 1 CCAATCAAAGAAAGCCACGAAACAGAGTATTTTAAAAACAGAGGAAAGCGAAAGAGATAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAATCAAAGAAAGCCACGAAACAGAGTATTTTAAAAACAGAGGAAAGCGAAAGAGATAA 60
Query 61 GCCTTTTAGACAAAACTAGTGGCAGACTGAAAAATGAACGCAGCGCTTGCAACAACCACC 120
||| | | | | ||| |||||||||| ||||||||||||||||||||
Sbjct 61 GCC-----G-------T--TTG--GAC--AAAAATGAACACAGCGCTTGCAACAACCACC 102
Query 121 GCCACAACTCCCGTACTCCGCCGTGAGACGCCTCTTCTTCATTATTGTTCTCTCACAACA 180
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 103 GCCACAACTCCTGTACTCCGCCGTGAGACGCCTCTTCTTCATCATTGTTCTCTCACAACA 162
Query 181 AAATCGCCGGTTTACCAAATC-AACAGAGTTAGATTCGGATCTTGCGTGCAAACAGTCAG 239
||||| ||||||| || ||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct 163 AAATCTCCGGTTTTCC-GATCAAACGGAGTTAGATTCGGATCTTGCGTGCAAAAAGTCAG 221
Query 240 CAAGAAATTCTTGAAAATCTCGGCGAGCTCTCAGAGCGCTTCAGCGGCGGTCAATGTCAC 299
||||||||| |||| |||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 222 CAAGAAATTTTTGAGAATCTCTGCGAGCTCTCAGAGTACTTCAGCGGCGGTAAATGTCAC 281
Query 300 GGCGGATGCTTCGATTCCGAAAGAGATGAAGGCGTGGGTGTATAGTGACTACGGCGGAGT 359
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 282 GGCGGATGCGTCGATTCCGAAAGAGATGAAGGCGTGGGTGTATAGTGAGTACGGCGGAGT 341
Query 360 TGATGTTCTGAAGCTGGAGAGTAACATTGTTGTGCCGGAGATTAAAGAAGATCAGGTTTT 419
||||||| |||||||||||||| |||| | |||||||||| |||||||||||||||||||
Sbjct 342 TGATGTTTTGAAGCTGGAGAGTGACATCGCTGTGCCGGAGGTTAAAGAAGATCAGGTTTT 401
Query 420 GATTAAAGTTGTTGCGGCGGCTCTTAATCCCGTCGATGCTAAGAGACGGCAAGGGAAATT 479
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 402 GATTAAAGTTGTTGCGGCGGCTCTTAATCCCGTTGACGCTAAGAGACGTCAAGGGAAATT 461
Query 480 TAAAGCCACTGATTCGCCTCTCCCGACTGTTCCGGGATACGACGTTGCCGGAGTAGTGGT 539
|||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 462 CAAAGCCACCGATTCACCTCTTCCGACTGTTCCGGGATACGATGTTGCCGGAGTAGTGGT 521
Query 540 GAAAGTGGGAAG-TGCGGTGAAGGATTTGAAAGAAGGAGATGAAGTTTATGCTAACGTGA 598
|||||| || | ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 522 GAAAGTTGG-TGCTGCGGTGAAGGATTTTAAAGAAGGAGATGAAGTTTACGCTAACGTGA 580
Query 599 GCGAGAAAGCATTGGAAGGTCCAAAGCAGTTTGGTTCTTTAGCGGAGTACACGGCCGTGG 658
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 581 GCGAGAAAGCATTGGAAGGTCCGAAGCAATTCGGTTCTTTAGCGGAGTACACGGCGGTGG 640
Query 659 AAGAGAAGTTATTAGCTTTAAAACCTAAAAACATCGATTTTGCGCAAGCTGCAGGGCTTC 718
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 641 AAGAGAAGTTATTAGCTTTAAAACCTAAAAACATCGATTTCGCGCAAGCCGCAGGGCTTC 700
Query 719 CGTTGGCGATAGAAACCGCTGATGAAGGTTTAGTTAGGACTGAATTCTCAGCCGGAAAGT 778
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 701 CATTGGCGATAGAAACCGCTGATGAAGGTCTAGTTAGGACTGAATTCTCCGCCGGAAAGT 760
Query 779 CAATTCTTGTTCTTAATGGTGCCGGAGGAGTAGGGAGTCTTGTGATTCAGTTGGCGAAGC 838
| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 761 CGATTCTTGTTCTTAATGGTGCTGGAGGAGTAGGGAGCCTTGCGATTCAGTTGGCGAAGC 820
Query 839 ACGTGTATGGAGCTTCAAAAGTAGCTGCAACTGCGAGTACAGAAAAGCTAGAGCTAGTGA 898
| |||||||||||||||||||| ||||| || |||||||| | ||||||||||||||||
Sbjct 821 ATGTGTATGGAGCTTCAAAAGTGGCTGCCACAGCGAGTACTGGGAAGCTAGAGCTAGTGA 880
Query 899 GAAGCTTAGGTGCTGATTTAGCTATTGATTACACAAAGGAGAATATAGAAGACTTGCCTG 958
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 881 GAAGCTTAGGTGCTGATTTAGCTATTGATTACACAAAGGAGAACATAGAAGAGTTGCCTG 940
Query 959 ACAAGTACGATGTTGTCTTTGACGCCATTGGGATGTGTGATAAGGCAGTGAAGGTGATTA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 ACAAGTACGATGTTGTCTTTGACGCCATTGGGATGTGTGATAAGGCAGTGAAGGTGATTA 1000
Query 1019 AGGAAGGAGGGAAAGTTGTGGCATTGACTGGAGCTGTCACGCCTCCTGGTTTTCGATTCG 1078
|||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 1001 AGGAAGGAGGGAAAGTTGTGGCATTGACCGGAGCTGTCACCCCGCCTGGTTTTAGATTCG 1060
Query 1079 TTGTTACATCTAATGGCGATGTTTTGAAGAAACTTAACCCATATATTGAGAGTGGGAAGG 1138
|||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1061 TTGTGACATCTAACGGCGATGTTTTGAAGAAATTTAACCCATACATTGAGAGTGGGAAGG 1120
Query 1139 TGAAGCCTGTGGTTGATCCCAAAGGACCGTTCCCATTCTCACGCGTTGCTGATGCTTTTT 1198
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct 1121 TGAAGCCTGTGGTTGATCCCAAAGGACCGTTCCCTTTCTCACGCATCGCTGATGCTTTCT 1180
Query 1199 CATACTTAGAAACGAACCATGCCACAGGGAAGGTCGTTGTTTATCCCATTCCTTAAGGGG 1258
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 1181 CATACTTAGAAACAAACCATGCCACGGGGAAGGTCGTTGTTTATCCCATCCCTTGAGGGA 1240
Query 1259 CTGGCTTGAGTGTAGTAGCCTTTATCTATCTATGTGTATAAGC-AT--A-G---CAA--G 1309
|||||||||||||||||||| |||||||||||||||||| | | | ||| |
Sbjct 1241 CTGGCTTGAGTGTAGTAGCC-----CTATCTATGTGTATAAGCTAAGCAAGTGTCAAAAG 1295
Query 1310 TGTTATCTTCTCTTTGTAT--T-AATGAGGGTGGAAATAAAAGTAAATGCTCTTTAAAGC 1366
|||||| |||||||||| | ||||||||||||||||||| |||| ||||||||||||
Sbjct 1296 TGTTATAATCTCTTTGTAAACTCAATGAGGGTGGAAATAAAAATAAAAGCTCTTTAAAGC 1355
Query 1367 TTTATTCATTTCTATTG 1383
||||||||||||| |||
Sbjct 1356 TTTATTCATTTCTTTTG 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51809044203
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5