BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G23750.1

Length=843
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg912235 jgi|Araly1|912235|Al_scaffold_0001_2489                    688    0.0  


> Ahg912235 jgi|Araly1|912235|Al_scaffold_0001_2489
Length=414

 Score =  688 bits (372),  Expect = 0.0
 Identities = 400/414 (97%), Gaps = 0/414 (0%)
 Strand=Plus/Plus

Query  114  ATGGCAGATTCCACCAAAGCAGGGTTGAAGAAGCCAGCTTTCACTAAGGTTGATCAGCTG  173
            ||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  1    ATGGCAGATACCGCCAAAGCCGGGTTGAAGAAGCCAGCTTTCACTAAGGTCGATCAGCTG  60

Query  174  CGTCCTGGGACTAGCGGACACAATGTCAATGTGAAGATTGTCAGCACGAAAATGGTGTTA  233
            |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct  61   CGTCCTGGGACTAGCGGACACAATGTCAATGTGAAGATCGTTAGCACGAAGATGGTGTTA  120

Query  234  CAGAAAGGTCGTGCTGATGGTCCTCAAGCTCGCCAGTTGCGGATTTCTGAATGCATTGTT  293
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  121  CAGAAAGGTCGTGCTGATGGTCCTCAGGCTCGCCAGTTGCGGATTTCTGAATGTATTGTT  180

Query  294  GGTGACGAGACAGGAGTGATCGTCTTTACCGCAAGAAATGACCAAGTGGACTTAATGAAA  353
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGAGACGAGACAGGAGTTATCGTCTTTACCGCAAGAAATGACCAAGTGGACTTAATGAAA  240

Query  354  GAGGGATCAACTGTAACTCTACGCAATGCGAAAATCGACATGTATAAAGGATCAATGAGG  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GAGGGATCAACTGTAACTCTACGCAATGCGAAAATCGACATGTATAAAGGATCAATGAGG  300

Query  414  CTAGCTGTAGACAAGTGGGGTCGTGTTGAAGTCACAGAGCCTGCGAGCTTCAAAGTGAAA  473
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CTAGCTGTGGATAAGTGGGGTCGTGTTGAAGTCACAGAGCCTGCGAGCTTCAAAGTGAAA  360

Query  474  GAAGACACCAACATGTCCCTTATCGAGTATGAGCTCGTAAACGTCGTTGAATGA  527
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  361  GAAGACACCAACATGTCCCTTATCGAGTATGAGCTCGTAAATGTCGTTGAATGA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31184546106


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5