BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23760.1
Length=2119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472637 jgi|Araly1|472637|fgenesh2_kg.1__2591__AT1G23760.1 2852 0.0
Ahg475291 jgi|Araly1|475291|fgenesh2_kg.2__421__AT1G60390.1 327 1e-88
> Ahg472637 jgi|Araly1|472637|fgenesh2_kg.1__2591__AT1G23760.1
Length=1990
Score = 2852 bits (1544), Expect = 0.0
Identities = 1812/1943 (93%), Gaps = 12/1943 (1%)
Strand=Plus/Plus
Query 87 CTCAACAAAAATGCGCAAACAA-TTTGTTTTTCTTCTGCCTTTCTTGTCACGTCTCTACC 145
|||||||||||||| |||| || ||||| ||||| || || |||||||| ||||||| ||
Sbjct 27 CTCAACAAAAATGCTCAAA-AATTTTGTCTTTCTCCTACCCTTCTTGTCGCGTCTCTTCC 85
Query 146 ATGTAGTTATAGCCGGAGGAGAACGGTTAACTAACGGCGGTTTTTCACCGGAGATAAATC 205
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 86 ATGTAGTTATGGCCGGAGGAGAACGGTTAACTAACGGCGGTTTTTCGCCGGAGATGAATC 145
Query 206 CGTTCACACCCAAAGCGTCTTTAGTACGTTACTGGAACAAACAGATCCATCACCAATCAC 265
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 146 CGTTCACACCCAAAGCATCTTTAGTACGTTACTGGAACAAACAGATCCAACACCAATCAC 205
Query 266 CCGGCTCAGCCTTTCTCCTCTCCAAGGCTTCACCACTTACCGCCGTCGCCTCCGCCACCT 325
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 206 CAGGCTCAGCCTTTCTCCTCTCCAAGGCTTCACCACTTACCGCTGTCGCCTCCGCCACTT 265
Query 326 TCGCCAAACTCGCCTCCGAAAACGCTCTTCCGGATCGCCTCCCCGACTTCTGCTCCGCCG 385
|||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 266 TCGCAAAACTCGCCTCTGAAAACGCTCTTCCGGATCGCCTACCGGACTTTTGCTCCGCGG 325
Query 386 CAAACCTCTTCTGTTTTCCAGATTTAGGTCCAACCCTCGAGAAACACAGCAACGACGTTA 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 CAAACCTCTTCTGTTTTCCAGATTTAGGTCCAACCCTCGAGAAACACAGCAACGACGTTA 385
Query 446 AATTCTCTGTTTACGACCAACGAAACTTCACCAACTA---CGGCACGATTCACCCCGGCG 502
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 386 AATTCTCTGTTTATGATCAACGAAACTTCACCAACTACGGCGGCACGATTCACCCCGGCG 445
Query 503 GTGCTGACTCGTTCAAGAAATATTCACAAAACGGTAACGCAGTAACCGACTCTTTCCGGC 562
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 446 GTGCTGATTCGTTCAAGAAATATTCACAAAACGGCAACGTAGTAACCGACTCTTTCCGGC 505
Query 563 GATACAGCCGAGACGCCGCCGGTCACGAAGATAAATTCACAGGCTACGCTGATAACAGCA 622
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 506 GATACAGCCGTGACGCCGCCGGTCACGAAGATAAGTTCACAGGCTACGCCGATAACAGCA 565
Query 623 ACGTCGTCGAGGAAAAATTCAATTCTTACGGCACATCAGCCACCGGCGGCTCCGGCGATT 682
||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||||
Sbjct 566 ACGTCGTTGAGGAAAACTTTAATTCTTACGGCACGTCAGCCACCGGTGGCTCCGGCGATT 625
Query 683 TTAAAAACTATCAATCCGGTGTTAACAATCCGACGACTCGTTTCAAGGCCTATTCCGACG 742
|||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||
Sbjct 626 TTAAAAACTATCAATCCGGTGTCAACAATCCGACTAGTCGTTTCAAGGCTTATTCCGACG 685
Query 743 AAGGAAATGGCCGTGCTCAGACGTTTAAAACCTATACTCACGAAGCCAACTCCGGACCGG 802
| ||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 686 ACGGAAACGGCCGGGCTCAGACGTTTAAGACCTATACTCACGAAGCCAACGCCGGACCGG 745
Query 803 GTCAATCTTTCACCAGTTACGGCAAAAACGGTAACGGAGCTCCAAACGAGTTCTCTTCTT 862
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 746 GTCAATCTTTCACCAGTTATGGCAAAAACGGTAACGGAGCTCCGAACGAGTTCTCTTCTT 805
Query 863 ACGGTGTCTCCTCTAACGTAATCGGATCTGATTTCTCAAACTACGGTGAAAACGGTAACG 922
|||| |||||||||||||| |||||||| ||||||||||||||||| || ||| ||||||
Sbjct 806 ACGGCGTCTCCTCTAACGTTATCGGATCGGATTTCTCAAACTACGGCGAGAACAGTAACG 865
Query 923 CAGCCAACGACACTTTCAAAGGCTACGGTGGTGACGGCAATGTTCCTCAGAATAACTTCA 982
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct 866 CAGCCAACGACACTTTCAAAGGCTACGGTGGCGACGGTAATGTTCCTCGGAATAACTTCA 925
Query 983 AAAGCTACGGTGCCTCCGGGAACGCTGCCGTTGACACGTTCTTGAATTATAGAGACAATG 1042
|||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 926 AAAGCTACGGTGCCTCTGGGAATGCCGCCGTTGACACATTCTTGAATTATAGAGACAAGG 985
Query 1043 CTAACGTTGGTGATGATTCGTTCT-CGTCGTATGCCAAGAACTCAAACTTCGAGAAGGTT 1101
|||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 986 CTAACGTTGGGGACGATTCGTT-TGCGTCGTATGCCAAGAACTCAAACTTCGAGAAGGTC 1044
Query 1102 GATTTCGTAAATTACGGCAAATCTATTAA-CCCGGGTTCAGAGTCGTTTAGTGGTTATGG 1160
|| ||||| |||||||||||||||||||| ||| ||||| || || |||| ||||||||
Sbjct 1045 GACTTCGTGAATTACGGCAAATCTATTAATCCC-GGTTCGGAATCATTTACCGGTTATGG 1103
Query 1161 TAAAGGAGCTGAGGGAAACAAAATTGATTTCAAAACGTATACTCAGAACTCTACGTTCAA 1220
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 1104 TAAAGGAGCTGAGGGAAACAAAATTGGTTTCAAAACGTATACTCAGAACTCAACCTTCAA 1163
Query 1221 GGACTACACGAAAACCGGAGTCGAATTTGCGAAATATAACCGGAGTAGTCTCGGTGGTGG 1280
||||||| ||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 1164 GGACTACGCGAAAACCGGAGTCGAATTTGCGAAATATAATCAGAGTAGACTCGGTGGTGG 1223
Query 1281 CAAAACGGTAAATAAGTGGGTGGAGCCTGGCAAGTTCTTTAGAGAGTCGATGCTTAAAGA 1340
|||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1224 CAAAACTGTGAATAAGTGGGTGGAGCCTGGCAAGTTCTTTAGAGAATCGCTGCTTAAAGA 1283
Query 1341 AGGTACATTGATTTGGATGCCTGACATTAAGGATAAAATGCCGAAAAGGTCGTTTCTACC 1400
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1284 AAGTTCATTGATTTGGATGCCTGACATTAAAGATAAAATGCCGAAAAGGTCGTTTCTGCC 1343
Query 1401 TCGTAGCATTGTCTCGAAACTACCGTTTTCTACATCGAAAATCGCGGAAATCAAGCGTGT 1460
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1344 TCGTAACATTGTCTCGAAACTACCGTTTTCGACATCAAAAATCGCGGAAATCAAGCGTGT 1403
Query 1461 TTTCCACGCTAACGATAACTCGACGATGGAAGGGATAATTACTGATGCGGTAAGGGAATG 1520
||||||||||| ||||||||||| |||| |||||||||||||||||| |||| |||||
Sbjct 1404 CTTCCACGCTAAGGATAACTCGACAATGGCAGGGATAATTACTGATGCCGTAACAGAATG 1463
Query 1521 TGAGAGACCGCCGACAGTCAGCGAGACTAAACGATGTGTCGGATCAGCGGAGGATATGAT 1580
||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1464 TGAGAGATCGCCGACAATTGGCGAGACTAAAAGATGTGTCGGATCAGCGGAGGATATGAT 1523
Query 1581 CGATTTCGCGACATCTGTGCTTGGTCGAAGTGTGGTACTCCGGACGACAGAGAGTGTAGC 1640
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1524 CGATTTCGCGACATCTGTGCTTGGTCGAAACGTGGTACTCCGGACTACAGAGAGTGTAGC 1583
Query 1641 CGGATCAAAGGAGAAAGTCATGATCGGTAAAGTCAATGGAATCAACGGTGGAAGAGTGAC 1700
|||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1584 CGGATCAAAGCAAAAAGTCATGATCGGAAAAGTCAAAGGAATCAACGGTGGAAGAGTGAC 1643
Query 1701 AAAATCAGTGTCGTGTCACCAAAGTTTGTACCCTTACTTACTCTACTACTGTCACTCTGT 1760
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 GAAATCAGTGTCATGTCACCAAAGTTTGTACCCTTACTTACTCTACTACTGTCACTCTGT 1703
Query 1761 GCCTAAAGTTCGGGTGTACGAGTCAGATCTTTTGGATCCCAAGAGTAAAGCCAAGATCAA 1820
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 GCCTAAAGTTCGAATATACGAGTCAGATCTTTTGGATCCCAAGAGTAAAGCCAAGATCAA 1763
Query 1821 CCATGGTATTGCTATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 CCATGGTATTGCTATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTT 1823
Query 1881 CATGTTGCTTGGGTCCCGGCCAGGTCAGATCGAAGTATGCCATTGGATCTTTGAGAATGA 1940
||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1824 CATGTCGCTTGGGTCCCGGCCGGGTCAGATCGAGGTTTGCCATTGGATCTTTGAGAATGA 1883
Query 1941 TATGAATTGGGCCATCGCCGATTAACCATGTTGTAGCAAAATGAATAATGAATGTTAAT- 1999
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1884 TATGAATTGGGCCATCGCCGATTAACCATGTCGTAGCAAATT-AATAATGAATGTTAATC 1942
Query 2000 GTTTTGTATCTCTATATTTCAGT 2022
|||| |||||| |||||| ||||
Sbjct 1943 GTTT-GTATCTTTATATTCCAGT 1964
> Ahg475291 jgi|Araly1|475291|fgenesh2_kg.2__421__AT1G60390.1
Length=2070
Score = 327 bits (177), Expect = 1e-88
Identities = 872/1196 (73%), Gaps = 94/1196 (8%)
Strand=Plus/Plus
Query 798 ACCGG-G-TCAATCTTTCACCAGTTACGGCAAAAACGGTAACGGAGCTCCAAACGAGTTC 855
||||| | |||||| ||||| || ||| |||||||||| ||||||||||| || ||||||
Sbjct 789 ACCGGAGATCAATCGTTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGAATGAGTTC 848
Query 856 TCTTCTTACGGTGTCTCCTCTAAC---G-TAAT-CGGATCTGATTTCTCAAACTACGGTG 910
|| |||||| | || ||| | || | ||| | | || | |||| ||||| |
Sbjct 849 TCGGGTTACGGAACCGGGTCAAACGTTGTTATTACGGGT-T--TTAC-CAAA-TACGGAG 903
Query 911 AAAACGGTAACGCAGCCAACGACACTTTCA-AAGGCTACGGTGGTGACGGCAATGTTCCT 969
||| || ||||| ||| ||||||| ||||| || ||||||| | |||| ||||||||
Sbjct 904 AAACCGCTAACGGAGCTAACGACAGTTTCACAA-GCTACGGAGAAAACGGGAATGTTCCG 962
Query 970 CAGAATAACTTCAAAAGCTACGGTGCCTCCGGGAAC-GCTGCCGTTGACACGTTCTT--G 1026
||| |||| ||| | ||||||| | || ||| || |||||| | ||| ||
Sbjct 963 GTTAATGACTTTAAAGGATACGGTGACGGAGGTAACGGC-GCCGTTTA-TGGTT-TTAAA 1019
Query 1027 AATTATAGAGA-CAATGCTAACGTTGGTGATGATTCGTTCTCGTCGTATGCCAAGAACTC 1085
||||| ||||| |||| | ||| | || | ||| || ||||| || || || || |||||
Sbjct 1020 AATTACAGAGACCAAT-CCAACATCGGAGTTGACTCTTTCTCTTCCTACGCTAAAAACTC 1078
Query 1086 AAACTTCGAGAAGGTTGATTTCGTAAATTACGGCAAATCTATTAACC-CGGGTTCAGAGT 1144
|||| ||||||||| |||||||||||||||| |||||| |||||| | || || || |
Sbjct 1079 AAACAACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAACCTC-GGCTCTGA-T 1136
Query 1145 CGTTT-AGTGGTTATGGTAAAGG--A-G-CTGAGGGAAACAAAATTGATTTCAAAACGTA 1199
||| | ||||| || |||| | | | || || ||| | | ||| ||||| |
Sbjct 1137 AATTTCACCGGTTACGGCCAAGGTAACGTCGGA-GGTAACGTCA--GCTTT-AAAAC-T- 1190
Query 1200 TAC--TC-AGAACTCTACG-TTCAAGGACTACACGAAA-ACCGGAGTCGAATTTGCGAAA 1254
||| | || || | | ||||||| || || ||| | ||| |||| |||||| |
Sbjct 1191 TACGGCCAAGGAC-AGA-GTTTCAAGGTGTATACTAAAGA-CGGCGTCGTTTTTGCG-CA 1246
Query 1255 TATAACCGGAGTAGTCTCG-G-T--GGTGGCAAAACGGTAAATAAGTGGGTGGAGCCTGG 1310
| || | | || | | | | | |||||||||||| ||||| ||||| ||| ||
Sbjct 1247 T-TATTC-TAATAATGT-GAGTTCCAATGGCAAAACGGTGAATAAATGGGTTGAGGAGGG 1303
Query 1311 CAAGTTCTTTAGAGAGTCGATGCTT-AAAGAAGGTACATTGATTTG-GA-TGCCTGACAT 1367
|| ||||| ||||| |||||| || || ||||| || |||| || | |||| || ||
Sbjct 1304 TAAATTCTTCAGAGAATCGATG-TTGAAGGAAGGGACTTTGA--TGCAACTGCCGGATAT 1360
Query 1368 TAAGGATAAAATGCCGAAAAGGTCGTTTCTACCTCGTAGCATTGTCTCGAAACTACCGTT 1427
||| ||||||||||| |||||| ||||| | || || | || || ||||| |||||||
Sbjct 1361 TAAAGATAAAATGCCTAAAAGGACGTTTTTGCCCCGAAATATAGTTTCGAATTTACCGTT 1420
Query 1428 TTC-TACATC-GAAAATCGCG-GAAATCAAGCGTGTTTTCCACG-CTAACGATAACTCGA 1483
||| | | || | | |||| | || ||| | | ||||| | | | || || |||
Sbjct 1421 TTCGT-CCTCTG-AGATCG-GAGAGATCTGGGGGGTTTTTGGTGCCGGA-GAGAATTCGT 1476
Query 1484 CGATGGAAGGGATAATTACT-GAT--GCGGTAAGGGAATGTGAGAGACCGCCGACAGT-C 1539
|||||| ||||||| | || | | ||||| || |||||||||||| || |||
Sbjct 1477 CGATGGCGGGGATAA-T-CTCG-TCGGCGGTTTCCGAGTGTGAGAGACCGGCG--AGTAA 1531
Query 1540 A-GCGAGACTAAACGATGTGTCGGATCAGCGGAGGATATGATCGATTTCGCGACATCTGT 1598
| | ||||| || || || || ||||| |||||||||||||| |||||||| || || ||
Sbjct 1532 AGGTGAGACGAAGCGGTGCGTTGGATCGGCGGAGGATATGATAGATTTCGCTACGTCGGT 1591
Query 1599 GCTTGGTCGAAGTGTGGTACTCCGGACGACAGAGAGTGTAGCCGGATCAAAGGAGAAAG- 1657
|||||| || |||| || | | || || |||| ||| | ||| |||||| || |||
Sbjct 1592 GCTTGGACGCGGTGTTGTGGTGAGAACCACGGAGAATGTCGTCGGGTCAAAGAAG-AAGA 1650
Query 1658 TCATGATCGGTAAAGTCAATGGAATCAACGGTGGAAGA-GTGACAAAATCAGTGTCGTGT 1716
|| ||||||| ||||||||||||||||||||||||| | || || | | | || ||||||
Sbjct 1651 TCGTGATCGGAAAAGTCAATGGAATCAACGGTGGAA-ATGTAACGAGAGCTGTTTCGTGT 1709
Query 1717 CACCAAAGTTTGTACCCTTACTTACTCTACTACTGTCACTCTGTGCCTAAAGTTCGGGTG 1776
||||| ||||| || ||||| ||||| || || |||||||| || ||| || |||||
Sbjct 1710 CACCAGAGTTTATATCCTTATTTACTGTATTATTGTCACTCGGTTCCTCGGGTACGGGTT 1769
Query 1777 TACGA-GTCAGATCTT-TTGGATCCC-AAGAGTAAAGCCAAGATCAACCATGGTATTGCT 1833
|| || | | ||||| ||| | ||| |||||| || ||||| ||||||||| ||||
Sbjct 1770 TATGAAG-CGGATCTACTTG-A-CCCGAAGAGTTTAGAAAAGATTAACCATGGTGTTGCC 1826
Query 1834 ATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTTCATGTTG-CTTG- 1891
|| ||||| || ||||| ||||||||| || ||| |||||||| || | ||| |||
Sbjct 1827 ATCTGTCATATTGACACGTCAGCTTGGAGTCCGAGTCATGGAGCATT--T-TTGGCTTTA 1883
Query 1892 GGTCCCGG--CCAGGTCAGATCGAAGTATGCCATTGGATCTTTGAGAATGATATGA 1945
|| | ||| || |||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1884 GG-CTCGGGTCCGGGTCGGATTGAAGTTTGCCATTGGATCTTTGAGAATGATATGA 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79722882785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5