BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23770.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472638 jgi|Araly1|472638|fgenesh2_kg.1__2592__AT1G23770.1 1151 0.0
Ahg921434 jgi|Araly1|921434|scaffold_102715.1 802 0.0
> Ahg472638 jgi|Araly1|472638|fgenesh2_kg.1__2592__AT1G23770.1
Length=961
Score = 1151 bits (623), Expect = 0.0
Identities = 857/966 (89%), Gaps = 31/966 (3%)
Strand=Plus/Plus
Query 76 GAGGGTCCAGTGCCAATGGA---TGTGGAGCTCGCTGCCGCTAAAAGCAAAAGGTTAAGT 132
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 4 GAGGGTCCAGTGCCAATGGATGTTGTGGAGCTCGCTGCCACTAAAAGCAAAAGGTTAAG- 62
Query 133 GA-ACCATTCTTTTTGAAAAATGTATTGCTTGAGAAATCTGGCGATACCAGTGACTTGAC 191
| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 63 CATACCATTCTTTTTGAAAAATGTATTGCTTGAGAAATGTGGTGATACCAGTGACTTAAC 122
Query 192 TGCTTTGGCTTTATCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGGATCA 251
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 123 TGCTTTGGCTTTGTCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGAATCA 182
Query 252 TGGCTCTGATAAGTTTAGCTTTTCAAAGAAGTTACTTTCTGTATCTCTAAGGTATACTCT 311
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 183 TGGCTCTGATAAGTTTAGCTTTTCAAAGGAGTTACTCTCAGTATCTCTAAGGTATACTCT 242
Query 312 GCCTGAGCTAATTA-CACGTAAGGATACTAATACAGTCGAGTCAGTTACTGTGAGGTTTC 370
||||||||| |||| | ||||||||||| |||||| ||||||| |||||||||| |||||
Sbjct 243 GCCTGAGCTCATTATC-CGTAAGGATACCAATACAATCGAGTCCGTTACTGTGAAGTTTC 301
Query 371 AGAACATAGGCCCTAGGCTTGTAGTTTACGGAACTCTAGGTGGGTCTTGTAAGCGAGTGC 430
||||| ||||||||||||||||||||||||||||| ||||||||| | || ||||||||
Sbjct 302 AGAACTTAGGCCCTAGGCTTGTAGTTTACGGAACTTTAGGTGGGTATGGTGGGCGAGTGC 361
Query 431 ACATGACTTCTCTTGATAAGAGTAGGTTTTTGCCTGTTATTGATTTGGTTGTGGATACTT 490
||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||||
Sbjct 362 ACATGACTTATCTTGATAAGCGTAGATTTTTGCCCGTTATTGATTCGGTTGTGGATACTT 421
Query 491 TGAAGTTTGAGAAGCAGGGCTCTTCTAGCTACTACCGGGAAGTGTTCATGTTGTGGAGAA 550
| |||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 422 TAAAGTTTGAAAAACAAGGCTCTTCGAGCTACTACCGCGAAGTGTTCATGTTGTGGAGAA 481
Query 551 TGGTAAAAGATGAACTTGTTATACCGTTGTTGATTGGTCTTTGTGATAAGGCTGGCTTGG 610
||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 482 TGGTAAAAGATGATCTTGTTATCCCGTTGTGGATTGGTCTTTGTGATAAGGCTGGCTTGG 541
Query 611 AATCTCCACCTTGTTTGATGCTCCTACCGACAGAGCTAAAGCTGAAGATACTAGAGTTGC 670
|||||||||||||| |||||| | |||| ||||| |||||||||||||||||||||||||
Sbjct 542 AATCTCCACCTTGTCTGATGCGCTTACCAACAGAACTAAAGCTGAAGATACTAGAGTTGC 601
Query 671 TTCCTGGTGTGAGTATTGGATA-TATGGCTTGTGTTTGTACAGAGATGCGGTATCTGGCT 729
|||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||| ||
Sbjct 602 TTCCTGGTGTGAGTATTGGA-ACTATGGCTTGTGTTTGTACAGAAATGAGGTATCTTGCA 660
Query 730 TCAGATAATGATTTGTGGGAACATAAATGCTTGGAAGAAGGTAAGGGTTGTCTTTGGAAA 789
||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 661 TCAGACAATGATTTGTGGAAACAGAAATGCTTGGAAGAAGGTAAGGATTGTCTTTGGAAA 720
Query 790 TTATATA-CAGGCGATGTTGATTGGAAGCGTAAATTTGCTTCTTTTTGGAGACGGAAA-C 847
|| | || |||| |||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 721 TTGT-TAACAGGAAATGTTGATTGGAAGCGTAAATTTGCTTCTTTTTGGAGA-GAAAAAC 778
Query 848 GACTC-GATCTCCTAGCAAGACGAAACCCTCCCATAAAAAAGAGCAACCCTCGATTTCCT 906
||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 GACTCAG-TCTCCTAGCAAGACGAAACCC------------GAGCAACCCTCGATTTCCT 825
Query 907 ACGCTATTTCCAGACCGTAGAGACCGTAGAGAGCCTTTTGACCGTTTTGGCCCAAGTGAC 966
|| || ||| |||||| |||||| | || | |||||||||||| | | |||||| |||
Sbjct 826 CCGATAATTCGTGACCGTGGAGACCCTCGATACCCTTTTGACCGTCTCGTCCCAAGAGAC 885
Query 967 --TT-CTACCGTTTTGGACTAAGAGACCCTAGAGACCGTTTTGGCCCAAGAGACCCTAGA 1023
|| | ||||||| | | |||||||||| ||| ||| || |||||||||||||||
Sbjct 886 CCTTTCGACCGTTTCAGCCCAAGAGACCCTTTCTACCATTTCGGTCCAAGAGACCCTAGA 945
Query 1024 GATCCT 1029
|| |||
Sbjct 946 GA-CCT 950
> Ahg921434 jgi|Araly1|921434|scaffold_102715.1
Length=1759
Score = 802 bits (434), Expect = 0.0
Identities = 654/755 (87%), Gaps = 36/755 (5%)
Strand=Plus/Plus
Query 39 TCCAGGC-GAAGGATCCAAGAGGGGAAATTCGGGTATAGAGGGTCCAGTGCC-A---A-- 91
|||| || |||||||||||| |||||||||| ||||| |||| ||||| ||| | |
Sbjct 677 TCCA-GCGGAAGGATCCAAGGGGGGAAATTCAGGTATGGAGGATCCAGAGCCGATGGATG 735
Query 92 -TG-G-A---TG---TGGAGCTCGCTGCCGCTAAAAGCAAAAGGTTAAGTGAACCATTCT 142
|| | | || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 736 TTGAGCAGCTTGACATGGAGCTCGCTGCCGCCGGAAGCAAAAGGTTAAGTGAACCATTCT 795
Query 143 TTTTGAAAAATGTATTGCTTGAGAAATCTGGCGATACCAGTGACTTGACTGCTTTGGCTT 202
| ||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||
Sbjct 796 TCTTGAAAAATGTATTGCTTGAGAAATCTGGTGATACTAGTGAATTGACTACTTTGGCTT 855
Query 203 TATCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGGA-TCATGGCTCTGAT 261
| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 856 TGTCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTCGATTC-TGGCTCTGAT 914
Query 262 AAGTTTAGCTTTTCAAAGAAGTTACTTTCTGTAT-CTCTAAGGTATACTCTGCCTGAGCT 320
| ||||| |||||||||| |||||||| |||||| || ||||||||||||| ||||||||
Sbjct 915 AGGTTTAACTTTTCAAAGGAGTTACTTACTGTATCCT-TAAGGTATACTCTACCTGAGCT 973
Query 321 AATT-ACACGTAAGGATACTAATACAG-TCGAGTCAGTTACTGTGAGGTTTCAGAACATA 378
|||| | | | ||||||| ||||| | |||||||||||||||||| |||||||||| ||
Sbjct 974 AATTAAGTC-TGAGGATACCAATAC-GATCGAGTCAGTTACTGTGAAGTTTCAGAACTTA 1031
Query 379 GGCCCTAG-GCTTGTAGTTTACGGAACTCTAGGTGGGTCTTGTAAGCGAGTGCACATGAC 437
|||||| | | ||||||||||||||||| ||||||||||| || ||||||||| ||||
Sbjct 1032 GGCCCT-GTGGTTGTAGTTTACGGAACTGTAGGTGGGTCTAGTGGGCGAGTGCATATGA- 1089
Query 438 TTCTCTTGATAAGAGTAGGTTTTTGCCTGTTATTGATTTGGTTGTGGATACTTTGAAGTT 497
|||||| ||| |||||||| |||| ||||| ||||||||| ||||||||| ||| |
Sbjct 1090 --ATCTTGAAAAGCGTAGGTTTGTGCCCGTTATCGATTTGGTTATGGATACTTCGAAATC 1147
Query 498 TGA-GAAGCAGGGCTCTTCTAGCTA-CTACCGGGAAGTGTTCATGTTGTGGAGAATGGTA 555
||| |||| | |||||||| ||| | ||| || |||||||||||||| ||||||||||||
Sbjct 1148 TGACGAAG-AAGGCTCTTCGAGC-ATCTATCGTGAAGTGTTCATGTTCTGGAGAATGGTA 1205
Query 556 AAAGA-TGAACTTGTTATACCGTTGTTGATTGGTCTTTGTGATAAGGCTGGCTTGGAATC 614
||||| || |||||||| ||||||||||||||| |||| ||||| |||||||||||| |
Sbjct 1206 AAAGATTG-TCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTGGCTTGGAACC 1264
Query 615 TCCACCTTGTTTGATGCTCCTACCGACAGAGCTAAAGCTGAAGATACTAGAGTTGCTTCC 674
|||||||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1265 TCCACCTTGTCTGATGCGCCTACCGTCAGAACTAAAGCTGAAGATACTAGAGTTGCTTCC 1324
Query 675 TGGTGTGAGTATTGGATATATGGCTTGTGTTTGTACAGAGATGCGGTATCTGGCTTCAGA 734
|||||||||||||||| |||||||||||||||||||||| ||| ||||||| || |||||
Sbjct 1325 TGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGAGGTATCTTGCATCAGA 1384
Query 735 TAATGATTTGTGGGAACATAAATGCTTGGAAGAAG 769
|||||||||||| |||| ||||||||||||||||
Sbjct 1385 CAATGATTTGTGGAAACAGAAATGCTTGGAAGAAG 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5