BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23780.1
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921434 jgi|Araly1|921434|scaffold_102715.1 1969 0.0
Ahg472638 jgi|Araly1|472638|fgenesh2_kg.1__2592__AT1G23770.1 785 0.0
Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019 259 5e-68
Ahg938332 jgi|Araly1|938332|scaffold_502523.1 230 4e-59
Ahg920940 jgi|Araly1|920940|scaffold_102221.1 178 1e-43
> Ahg921434 jgi|Araly1|921434|scaffold_102715.1
Length=1759
Score = 1969 bits (1066), Expect = 0.0
Identities = 1333/1460 (91%), Gaps = 25/1460 (2%)
Strand=Plus/Plus
Query 40 CCGATAATGAAGCTACGATTGAGACATCACGAGACGAGAGAAACCCTAAAACTTGAATTG 99
|||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CCGAGAATGAAGCTGCGGTTGAGACATCACGAGACGAGAGAAACCCTAAAACTTGAATTG 368
Query 100 GCCGATGCAGACACTCTCCATGATCTCCGGCGACGGATCAACCCCACGGTGCCTTCCTCC 159
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 369 ACCGATACAGACACTCTCCATGATCTCCGGCGACGGATCAACCCCACGGCGCCTTCCTCC 428
Query 160 GTTCATCTCTCGCTCAATCGTAAAGACGAGCTCATCACGCCTTCGCCGGAGGATACGCTC 219
|||||||| || || |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 429 GTTCATCTATCACTTAATCGTAAAGACGAGCTCGTCACGCCTTCTCCGGAGGATACGCTC 488
Query 220 CGATCTCTTGGTTTAATATCCGGTGACCTAATTTACTTCTCTCTCGAGGCTGGCGAATCT 279
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 489 CGATCTCTTGGTTTAATATCCGGTGACCTAATTTACTACTCTCTCGAGGCTGGCGAATCT 548
Query 280 TCGAATTGGAAATTGAGAGATTCTGAAACCGTAGCTTCTCAATCGGAGAGTAATCAGACG 339
||| |||| |||||||||||| ||||||| ||||| |||||||||||||||||||| ||
Sbjct 549 TCGGGTTGGGAATTGAGAGATTATGAAACCCTAGCTCCTCAATCGGAGAGTAATCAGGCG 608
Query 340 AGTGTTCATG-AT---T-CG-ATTGGGTTCGCAGAGGTTGATGTTGTCCCCGATCAAGCG 393
| |||||||| || | | ||||| |||||||||||||| | | | ||| ||
Sbjct 609 ATTGTTCATGAATCCATGGGTATTGGATTCGCAGAGGTTGA---T-T--CTAATC---CG 659
Query 394 AAATCTAATCCTA-ATACCTCC-GTAGAA-GATCC-AGAGGGAGATATTTCGGGTATGGA 449
|| || | || | | ||| | ||| ||||| || ||| || | ||| ||||||||
Sbjct 660 AATTC-CGGCGTAGA-AGATCCAGCGGAAGGATCCAAG-GGGGGA-AATTCAGGTATGGA 715
Query 450 GGGTCCAGAGCCGATGGATGTTGAGCAGCTTGACATGGAGCTCGCTGCAGCTGGAAGCAA 509
|| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 716 GGATCCAGAGCCGATGGATGTTGAGCAGCTTGACATGGAGCTCGCTGCCGCCGGAAGCAA 775
Query 510 AAGGCTAAGTGAACCATTCTTCTTGAAAAATATACTGCTTGAGAAATCTGGTGATACTAG 569
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 776 AAGGTTAAGTGAACCATTCTTCTTGAAAAATGTATTGCTTGAGAAATCTGGTGATACTAG 835
Query 570 TGAGTTGACTACTTTGGCTTTGTCAGTACATGCTGTTATGTTAGAATCTGGATTCGTGCT 629
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 836 TGAATTGACTACTTTGGCTTTGTCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTT 895
Query 630 GTT-GAATCATGGCTCTGACAAGTTTAACTTTTCAAAGGAGTTACTTACAGTATCCCTGA 688
||| || || ||||||||| | ||||||||||||||||||||||||||| |||||| | |
Sbjct 896 GTTCGATTC-TGGCTCTGATAGGTTTAACTTTTCAAAGGAGTTACTTACTGTATCCTTAA 954
Query 689 GGTATACTCTACCTGAGCTGATTAAGTCTAAGGATACAAATACAATCGAGTCAGTTTCTG 748
||||||||||||||||||| ||||||||| ||||||| ||||| |||||||||||| |||
Sbjct 955 GGTATACTCTACCTGAGCTAATTAAGTCTGAGGATACCAATACGATCGAGTCAGTTACTG 1014
Query 749 TGAAGTTTCAGAATTTAGGCCCTGTGGTTGTAGTTTACGGAACTGTAGGTGGATCTAGTG 808
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1015 TGAAGTTTCAGAACTTAGGCCCTGTGGTTGTAGTTTACGGAACTGTAGGTGGGTCTAGTG 1074
Query 809 GGCGAGTGCATATGAATCTTGATAAGCGTAGGTTTGTTCCTGTTATCGACTTGGTTATGG 868
|||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct 1075 GGCGAGTGCATATGAATCTTGAAAAGCGTAGGTTTGTGCCCGTTATCGATTTGGTTATGG 1134
Query 869 ATACTTCTACATCTGACGAAGAAGGCTCTTCGAGTATCTACCGTGAAGTGTTCATGTTCT 928
||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1135 ATACTTCGAAATCTGACGAAGAAGGCTCTTCGAGCATCTATCGTGAAGTGTTCATGTTCT 1194
Query 929 GGAGAATGGTAAAAGATCGCCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTG 988
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGAGAATGGTAAAAGATTGTCTTGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTG 1254
Query 989 GCTTGGAACCTCCACCGTGTTTGATGCGCTTACCAACAGAGCTAAAGCTGAAGATACTAG 1048
|||||||||||||||| ||| |||||||| |||| |||| |||||||||||||||||||
Sbjct 1255 GCTTGGAACCTCCACCTTGTCTGATGCGCCTACCGTCAGAACTAAAGCTGAAGATACTAG 1314
Query 1049 AGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGCGGTATC 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1315 AGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGAAATGAGGTATC 1374
Query 1109 TGGCATCAGACAATGACTTGTGGAAGCAGAAGTGCTTGGAGGAAGTTAATAATTTTGTTG 1168
| |||||||||||||| |||||||| ||||| |||||||| |||||| ||||||||| ||
Sbjct 1375 TTGCATCAGACAATGATTTGTGGAAACAGAAATGCTTGGAAGAAGTTGATAATTTTGCTG 1434
Query 1169 TGACAGAAGCGGGTGATTCAGTTAATTGGAAGGCGAGGTTTGCTACTTTTTGGAGGCAAA 1228
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1435 TCACAGAAGCGGGTGATTCAGTTAATTGGAAGGCGAGATTTGCTACTTTTTGGAGGCAAA 1494
Query 1229 AACAGCTTGCTGCTGCTAGTGATACTTTTTGGAGGCAAAACCAGCTTGGAAGGCGGAACA 1288
||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1495 AACAGCTTGCTACTGCTAGTGCTACTTTTTGGAGGCAAAACCAGCTTGGAAGACGGAACA 1554
Query 1289 TTTCCACGGGAAGAAGCGGCATACGATTCCCTCGAATCATTGGAGACCCTCCTTTCACAT 1348
|||||| |||||||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1555 TTTCCATGGGAAGAAGCACCATACGATTCCCTCGAATCATCGGAGACCCCCCTTTCACAT 1614
Query 1349 GGTTTAATGGGGATCGCATGCATGGATCCATTGGTATTCACCCGGGACAATCAGCACGTG 1408
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1615 GGTTTAATGGGGATCGCATGCATGGATCCATTGGTATTCACCCGGGACAACCGGCACGTG 1674
Query 1409 GGCTCGGCAGACGAACATGGGGACAGCTCTTTACTCCCAGATGCAATCTTGGGGGACTCA 1468
|||| ||| ||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1675 GGCTTGGCGGACGAACTTGGGGACAGCAGTTTACTCCCAGATGCAACCTTGGGGGACTAA 1734
Query 1469 ACTAGCAAACATACCGAGTG 1488
|||||||||||||||| |||
Sbjct 1735 ACTAGCAAACATACCGGGTG 1754
> Ahg472638 jgi|Araly1|472638|fgenesh2_kg.1__2592__AT1G23770.1
Length=961
Score = 785 bits (425), Expect = 0.0
Identities = 604/687 (88%), Gaps = 25/687 (4%)
Strand=Plus/Plus
Query 485 TGGAGCTCGCTG-CAGCTGGAAGCAAAAGGCTAAGTGA-ACCATTCTTCTTGAAAAATAT 542
|||||||||||| || || |||||||||| |||| | ||||||||| ||||||||| |
Sbjct 29 TGGAGCTCGCTGCCA-CTAAAAGCAAAAGGTTAAG-CATACCATTCTTTTTGAAAAATGT 86
Query 543 ACTGCTTGAGAAATCTGGTGATACTAGTGAGTTGACTACTTTGGCTTTGTCAGTACATGC 602
| |||||||||||| ||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 87 ATTGCTTGAGAAATGTGGTGATACCAGTGACTTAACTGCTTTGGCTTTGTCAGTACATGC 146
Query 603 TGTTATGTTAGAATCTGGATTCGTGCTGTTGAATCATGGCTCTGACAAGTTTAACTTTTC 662
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 147 CGTTATGTTAGAATCTGGATTCGTGTTGTTGAATCATGGCTCTGATAAGTTTAGCTTTTC 206
Query 663 AAAGGAGTTACT-TACAGTATCCCTGAGGTATACTCTACCTGAGCTGATTAAGT-C-TAA 719
|||||||||||| | ||||||| || ||||||||||| |||||||| ||| | | | |||
Sbjct 207 AAAGGAGTTACTCT-CAGTATCTCTAAGGTATACTCTGCCTGAGCTCATT-A-TCCGTAA 263
Query 720 GGATACAAATACAATCGAGTCAGTTTCTGTGAAGTTTCAGAATTTAGGCCCTGTGG-TTG 778
|||||| |||||||||||||| ||| |||||||||||||||| ||||||||| || |||
Sbjct 264 GGATACCAATACAATCGAGTCCGTTACTGTGAAGTTTCAGAACTTAGGCCCT-AGGCTTG 322
Query 779 TAGTTTACGGAACTGTAGGTGGATCTAGTGGGCGAGTGCATATGA---ATCTTGATAAGC 835
|||||||||||||| ||||||| | | ||||||||||||| |||| ||||||||||||
Sbjct 323 TAGTTTACGGAACTTTAGGTGGGTATGGTGGGCGAGTGCACATGACTTATCTTGATAAGC 382
Query 836 GTAGGTTTGTT-CCTGTTATCGACTT-GGTTATGGATACTTCTACA-TCTGACGAAGAAG 892
|||| ||| || || ||||| || || |||| ||||||||| || | | ||| || |||
Sbjct 383 GTAGATTT-TTGCCCGTTATTGA-TTCGGTTGTGGATACTT-TAAAGTTTGAAAAACAAG 439
Query 893 GCTCTTCGAG-TATCTACCGTGAAGTGTTCATGTTCTGGAGAATGGTAAAAGATCG-CCT 950
|||||||||| || |||||| |||||||||||||| |||||||||||||||||| | ||
Sbjct 440 GCTCTTCGAGCTA-CTACCGCGAAGTGTTCATGTTGTGGAGAATGGTAAAAGAT-GATCT 497
Query 951 TGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTGGCTTGGAACCTCCACCGTGTTT 1010
|||||||||||||| ||||||| |||| ||||| |||||||||||| ||||||| ||| |
Sbjct 498 TGTTATCCCGTTGTGGATTGGTCTTTGTGATAAGGCTGGCTTGGAATCTCCACCTTGTCT 557
Query 1011 GATGCGCTTACCAACAGAGCTAAAGCTGAAGATACTAGAGTTGCTTCCTGGTGTGAGTAT 1070
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GATGCGCTTACCAACAGAACTAAAGCTGAAGATACTAGAGTTGCTTCCTGGTGTGAGTAT 617
Query 1071 TGGAAATATGGCTTGTGTTTGTACAGAAATGCGGTATCTGGCATCAGACAATGACTTGTG 1130
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 618 TGGAACTATGGCTTGTGTTTGTACAGAAATGAGGTATCTTGCATCAGACAATGATTTGTG 677
Query 1131 GAAGCAGAAGTGCTTGGAGGAAGTTAA 1157
||| ||||| |||||||| |||| |||
Sbjct 678 GAAACAGAAATGCTTGGAAGAAGGTAA 704
> Ahg893023 jgi|Araly1|893023|Al_scaffold_0006_1019
Length=792
Score = 259 bits (140), Expect = 5e-68
Identities = 205/235 (87%), Gaps = 9/235 (4%)
Strand=Plus/Plus
Query 130 CGACGGATCAACCCCACGGTGCCTTCCTCCGTTC--ATCTCTCGCTCAATCGTAAAGACG 187
|||||| |||| ||||||| ||||| |||||||| |||| ||||| |||||||||||||
Sbjct 81 CGACGGCTCAATCCCACGGCGCCTT-CTCCGTTCATATCTATCGCTTAATCGTAAAGACG 139
Query 188 AGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACC 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 AGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACC 199
Query 248 TAATTTACTTCTCTCTCGAGGCTGGCGAATCTTCGAATTGGAAATTGAGAGATTCTGAAA 307
|||||||| ||||| ||||||| ||||| |||| | | ||||||||||||| | |||
Sbjct 200 TAATTTACCAATCTCTTGAGGCTGACGAATTTTCG--TCGAAAATTGAGAGATTATCAAA 257
Query 308 CCGTAGCTTCTCAATCGGAGAGTAATCA-GACGAGTGTTCATGATTCGATTGGGT 361
|| |||| |||||||||||||| |||| | ||| ||||||||| || || ||||
Sbjct 258 CCA-AGCTCCTCAATCGGAGAGTTATCATG-CGATTGTTCATGAATCTAT-GGGT 309
> Ahg938332 jgi|Araly1|938332|scaffold_502523.1
Length=500
Score = 230 bits (124), Expect = 4e-59
Identities = 301/380 (79%), Gaps = 38/380 (10%)
Strand=Plus/Plus
Query 862 GTTATGGATACTTCT-ACA-TCTGACGAAGAAGGCTCTTCGAGTATCTACCGTGAAGTGT 919
||||| ||||||| | | | |||||| |||||||||||||||||||||||||||| ||||
Sbjct 96 GTTATCGATACTT-TGA-AGTCTGACAAAGAAGGCTCTTCGAGTATCTACCGTGAGGTGT 153
Query 920 TCATGTTCTGGAGAATGGTAAAAGATCGC-CTTGTTATCCCGTTGTTGATTGGTATTTGC 978
||| || |||||||| ||||||| || | ||||||||||||||||||||||||||| |
Sbjct 154 TCAAGTACTGGAGAACGGTAAAATAT-GATCTTGTTATCCCGTTGTTGATTGGTATTACC 212
Query 979 GATAAAGCTGGCTTGGAACCTCCACCGTGTTTGATGCGCTTACCAACAGAGCTAAAGCTG 1038
||||| | | |||| ||||||||| || ||||||||||| ||||| ||
Sbjct 213 AATAAA----------A-C-TCCA---TGTTTGATGTGCCTACCAACAGAGATAAAGATG 257
Query 1039 AAGAT-ACTAGAGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGA 1097
||||| | |||||||||||||||| | |||| ||| ||| |||||||| ||||||||||
Sbjct 258 AAGATGA-TAGAGTTGCTTCCTGGAGCGAGTGTTGCAAAGATGGCTTGCCTTTGTACAGA 316
Query 1098 AATGCGGTATCTG--GCATCAGACAATGACTTGTGGAAGCAGAAG-TGCTTGGAGGAAGT 1154
| |||||| |||| || | ||| ||||||||||||| |||| || ||| | ||||
Sbjct 317 ATTGCGGTCTCTGTCGC-T-AGATGATGACTTGTGGAAA-AGAAAATGGTTGAAAGAAGC 373
Query 1155 TAATAATTTTGTTGTGA-CA---GAAGCGGGTGATTC-AGTTAATT-GGAAGGCGAGGTT 1208
||| ||| ||||||||| || || ||| || ||| |||||||| |||||| | ||
Sbjct 374 TAAGAATGTTGTTGTGATCACTCGATTCGG-TG-TTCCAGTTAATTTGGAAGGAAAATTT 431
Query 1209 TGCTACTTTTTGGAGGCAAA 1228
|||| ||||||||||| |||
Sbjct 432 TGCTGCTTTTTGGAGG-AAA 450
> Ahg920940 jgi|Araly1|920940|scaffold_102221.1
Length=203
Score = 178 bits (96), Expect = 1e-43
Identities = 118/128 (92%), Gaps = 3/128 (2%)
Strand=Plus/Plus
Query 130 CGACGGATCAACCCCACGGTGCCTTCCTCCGTTC--ATCTCTCGCTCAATCGTAAAGACG 187
|||||| |||| ||||||| ||||| |||||||| |||| ||||| |||||||||||||
Sbjct 77 CGACGGCTCAATCCCACGGCGCCTT-CTCCGTTCATATCTATCGCTTAATCGTAAAGACG 135
Query 188 AGCTCATCACGCCTTCGCCGGAGGATACGCTCCGATCTCTTGGTTTAATATCCGGTGACC 247
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 136 AGCTCATCACGCCTTCGCCGGAGGATACGTTTCGATCTCTTGGTTTAATATCCGGTGACC 195
Query 248 TAATTTAC 255
||||||||
Sbjct 196 TAATTTAC 203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69095704430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5