BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23790.1
Length=1817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313236 jgi|Araly1|313236|fgenesh1_pm.C_scaffold_1002016 2054 0.0
> Ahg313236 jgi|Araly1|313236|fgenesh1_pm.C_scaffold_1002016
Length=1623
Score = 2054 bits (1112), Expect = 0.0
Identities = 1469/1627 (90%), Gaps = 82/1627 (5%)
Strand=Plus/Plus
Query 137 ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTT 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCTTTAGCCCCCGGAATCCTTCAAAAGCTAATCGACGGTATGAAAACCGGAGTT 60
Query 197 AAACCGACCGGAGAACACAGAAGCTCGTTATTACAAGTCACAGATATCGTCCCTATTGAT 256
||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 61 AAACCCACCGGAGAACACAGAAGCTCTTTATTACAAGTCACTGATATCGTCCCCGTTGAT 120
Query 257 CTTGACGAGAAGAATCTTTTACCGAAACAAGGCTTCTTCATAAAAGTCTCTGATTCTTCT 316
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGACGAGAAGAATCTTATACCCAAACAAGGCTTCTTCATAAAAGTCTCTGATTCTTCT 180
Query 317 CATTCAATCTACGTTAGCCTTCCTTCAGATCAAGACGACGACGTTTTAAGCAACAAGATG 376
||||||||||||||||| |||||||| |||||||||||||||||| | ||||||||||||
Sbjct 181 CATTCAATCTACGTTAGTCTTCCTTCTGATCAAGACGACGACGTTCTCAGCAACAAGATG 240
Query 377 CAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGACACCTGTTCCGATCATC 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGTTAGGTCAGTTTATCTACGTTGATCGGCTTGATCCAGGGACACCTGTTCCGATCATC 300
Query 437 AAAGGTGCTAGACCGATTCCCGGACGACATCCTTTACTTGGAACTCCTGAGCCATTGATG 496
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 301 AAAGGTGCTAGACCGATTCCGGGACGACATCCGTTGCTTGGAACTCCTGAGCCATTGATG 360
Query 497 AGTACAAGAGGAAAGATT--G--AGAGT-T----CGAGACCTAGAAGAGGTTCTTGGGGT 547
|||||||||||||||||| | ||||| | ||||||| |||||||| |||||||||
Sbjct 361 AGTACAAGAGGAAAGATTGAGAAAGAGTCTGGGACGAGACCGAGAAGAGGCTCTTGGGGT 420
Query 548 CAAAACGGTGACGTTTCGTCTCCGTTTGTGTTAAAGCCTGCACCTTTGGATTTTGATCAG 607
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAAACGGTGATGTTTCGTCTCTGTTTGTGTTAAAGCCTGCACCTTTGGATTTTGATCAG 480
Query 608 TGTACGCCGGCGAAACATAGGCTTGGTACGGGGAGATTTATGGCGGCGTCTCCGAAT-GT 666
||||||||||||||||||||| |||||||||||||||| ||||||| ||||||| | ||
Sbjct 481 TGTACGCCGGCGAAACATAGGATTGGTACGGGGAGATTCATGGCGGGGTCTCCG-GTGGT 539
Query 667 TATGACTAGAGGGAGGTCACCTGGTGGTGTTAGATGTTCTTATGGTGGAGGGCTTTTGTC 726
||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 540 TATGACTAGAGGGAGATCTCCTGGTGGTGTTAGGTGTTCTTATGGAGGAGGGCTTTTGTC 599
Query 727 GAAAA---TGG--C-----GGAG--AGTCCTGCTGCAATGATGAGGAAGAGCTGTGTTGT 774
||||| ||| | |||| ||||||||||| |||||||||||||| ||||||||
Sbjct 600 GAAAATGGTGGATCTTAAAGGAGAAAGTCCTGCTGCGATGATGAGGAAGAGTTGTGTTGT 659
Query 775 TCCGCCGAGTTCGAAGTTTCCGAGAAGTAAAAGTGTTTGCGATAGAGAGACAATGGCAAA 834
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 660 TCCGCCGAGTTCGAAGTTTCCGAGAAGTAGAAGTGTTTGCGATAGAGAGACGATGGCGAA 719
Query 835 GAACTCTG----TTC--TT-TT-T-AGTCCTTTTAAATCCTCTGCAAAGAAAAACGATTC 885
|||||||| ||| || || | |||||||||||||||||||||||||||| ||||||
Sbjct 720 GAACTCTGTTTCTTCTGTTCTTCTAAGTCCTTTTAAATCCTCTGCAAAGAAAAGCGATTC 779
Query 886 ACCGCCTCCGAGTGTACGTACTAGAAGAGCAACAGCAGCTTCCTTGTTGGAAGATGAAAG 945
||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 780 ACCGCCTCCGAGTATGCGTACTAGAAGAGCAACAGCAGCTGCTTTGTTGGAAGATGAAAG 839
Query 946 AGA-G-------G-CT--C-CAAA----G--TCT----A-C-T---TCAAAGTATAGTAA 978
||| | | || | |||| | ||| | | | || |||||||||||
Sbjct 840 AGAGGCTCCAAAGTCTACCTCAAAGCTGGCTTCTCCAAAGCATGAATCTAAGTATAGTAA 899
Query 979 GCTGGAAAAACCTGAGAAGAGTTTGAGTCTACCAGGAAGACTTAGCACACTGAGCAAGGA 1038
| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTGGAAAAAACAGAGAAGAGTTTGAGTCTACCAGGAAGACTTAGCACACTGAGCAAGGA 959
Query 1039 AGCTATGCAACAGCGAGAGACGGCTCAAAAGATAGCTCTTCAGGCATTGAGAGAAGCTAC 1098
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 AGCTATGCAGCAGCGAGAGACGGCTCAGAAGATAGCTCTTCAGGCATTGAGAGAAGCTAC 1019
Query 1099 AACAACAGAAACAGTAGTTCGTCATCTCAAGACATTTGCAAATCTGAGCAAATCAGCAAA 1158
| | || |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1020 AGCTACCGAAACAGTCGTTCGTCATCTCAAGACATTTGCCAATCTAAGCAAATCAGCAAA 1079
Query 1159 AGCTGATTGTCCAGCTGCTTGCTTCGACAAGTTCTTGGAGTTTCACAGCCAGATATCTGA 1218
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AGCTGATTGTCCGGCTGCGTGCTTCGACAAGTTCTTGGAGTTTCACAGCCAGATATCTGA 1139
Query 1219 AACCATGAACGAAATTGCTTCTATCGAAGCAGCTGCTTCACCTGCTACTACTGAGAAAAA 1278
|||| |||||||||| || || || |||||||||||||| | ||||||||||| ||
Sbjct 1140 AACCGTGAACGAAATCGCGTCCATTGAAGCAGCTGCTTC---T---ACTACTGAGAACAA 1193
Query 1279 ATCTGAGGATGGATCAT--TA-ATACTACACGAAATCCAGCATAACTCTATTGATCAGGA 1335
||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||
Sbjct 1194 ATCTGAGGATGGATCATCGTCGATACTACACGAAATCCCGCACAACTCTATTGATCAGGA 1253
Query 1336 GAAAACAACATCAAAGAGAAGAATTCTCCTGAAGCAGCAGCAAAA------G-A---GA- 1384
||||||||||||||||||||||| | ||||||||||||||||||| | | ||
Sbjct 1254 GAAAACAACATCAAAGAGAAGAACTGTCCTGAAGCAGCAGCAAAATCACAAGCAAATGAG 1313
Query 1385 -TCAAACGATGAGAACAAGAACCCCGCAGTTTCT-CTTTCCGGATTAGGAAACACGGCGA 1442
|||||||||||||||||||||||||||| | || ||| |||| ||||||||||| ||||
Sbjct 1314 ATCAAACGATGAGAACAAGAACCCCGCAGCTCCTTCTT-CCGGGTTAGGAAACACCGCGA 1372
Query 1443 GGTTGGTTAAAGAGATAGAGAAAGAAGCTGCAAATTGGTTCATGGAGTTTATAGAAAAGG 1502
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1373 GGTTGGTGAAAGAGATAGAGAATGAAGCTGCAAATTGGTTCATGGAGTTTATAGAAAAGG 1432
Query 1503 CTCTGGAGAAAGGGATGAAGAAATGTAAAGGCACAAGTGATGCAGATGTTAAGAAGGTTC 1562
|| ||||||||||||||||||| || | || |||||||||||||||||||||||||||||
Sbjct 1433 CTTTGGAGAAAGGGATGAAGAAGTGCAGAGACACAAGTGATGCAGATGTTAAGAAGGTTC 1492
Query 1563 CACAGTCTCTGATTCTCAAAGTTGTAAACTGGGTGGAAGAAGAACATTCTGCTGATAACA 1622
||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 1493 CACAGTCTCTGATTCTCAAAGTTGTAAACTGGGTGGAAGCAGAACAATGTGCTGATAACA 1552
Query 1623 CGAAACGACCAGTTCATCCAAAAGCATCACATATCACTAGAAAGCTCAGAATCAAGTTGA 1682
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CGAAACGACCAGTTCATCCAAGAGCATCACATATCACTAGAAAGCTCAGAATCAAGTTGA 1612
Query 1683 AGAATCC 1689
|||||||
Sbjct 1613 AGAATCC 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68219628795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5