BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G23810.1 Length=726 Score E Sequences producing significant alignments: (Bits) Value Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 778 0.0 Ahg930704 jgi|Araly1|930704|scaffold_303161.1 327 5e-89 Ahg930697 jgi|Araly1|930697|scaffold_303154.1 327 5e-89 Ahg921492 jgi|Araly1|921492|scaffold_102773.1 281 4e-75 Ahg930698 jgi|Araly1|930698|scaffold_303155.1 172 2e-42 Ahg912289 jgi|Araly1|912289|Al_scaffold_0001_2543 147 1e-34 > Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 Length=711 Score = 778 bits (421), Expect = 0.0 Identities = 600/685 (88%), Gaps = 17/685 (2%) Strand=Plus/Plus Query 35 TGGAAGATG-GAAAGGCATACGTCAATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACCT 93 ||||||||| | | | | ||| || ||||||||| || ||||||| |||| || |||||| Sbjct 35 TGGAAGATGCG-ATGTCGTACATCGATGCTGTGAGGGACGCATTGCAGGATGCTGAACCT 93 Query 94 GCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGAGGTGATAGCGC-GA-AGGATGGGT 150 | ||||||| ||||||||||||| || ||||| ||| | | | || || || || ||| Sbjct 94 GAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGA--TTTTGGAGCTGATAGAATCGGT 150 Query 151 ATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTCT 209 || ||| ||||||||||| |||||||||| ||||||||||||||| || |||| | ||| Sbjct 151 ATAGCTGCTTTCAGTGCAAGCATGCAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCT 209 Query 210 TGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGA 269 |||||| |||||| | ||| ||| | ||| ||||| | ||||||||||||||||||| | Sbjct 210 TGGTTTCAATGTCTTCCTTCCACTTCAGTTTCAGATAAACATCCCTCCCGAGGCTAGC-A 268 Query 270 -AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGATG 328 ||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||| Sbjct 269 CAGAGTTTCATAAGGTGGTTAGAAGAAGCGTACCA---CCGAAGCCTACCATGGATGATG 325 Query 329 CGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGG 388 |||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||||||| Sbjct 326 CGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGG 385 Query 389 AAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTG 448 |||| ||||||||||||||||| |||||||||||||| || |||| ||||||||||||| Sbjct 386 AAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTG 445 Query 449 CTAGGGTGGAGGAACTCATGAAAGATCACTCGAATCTGCTTTTTGGTTTCTGTGTCTTCC 508 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 446 CTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCC 505 Query 509 TTTCAGCTACAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTC 568 ||||||||| || |||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 506 TTTCAGCTAAAATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTC 565 Query 569 AAGTAGTTGACTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAAC 628 | || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 566 ATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAA 625 Query 629 ATGATGCGTATCAGGAGATCGTTGCACTTGTTCAGGGTCATG-ACGATTTAGTCATGGAG 687 |||||| |||||||||| ||| ||||||| |||||||||||| | |||||| |||||||| Sbjct 626 ATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGGTCATGGA-GATTTACTCATGGAG 684 Query 688 CTTTCACAAATTTTCACTGATCCAT 712 |||||| ||||||||| |||| ||| Sbjct 685 CTTTCAGAAATTTTCAGTGATTCAT 709 > Ahg930704 jgi|Araly1|930704|scaffold_303161.1 Length=667 Score = 327 bits (177), Expect = 5e-89 Identities = 436/556 (78%), Gaps = 37/556 (7%) Strand=Plus/Plus Query 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117 ||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || | Sbjct 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139 Query 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173 | ||| | || ||| ||| || | || | | | ||||| || | |||| | || Sbjct 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194 Query 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231 | |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| | Sbjct 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250 Query 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280 || ||||| | || | |||||||||| | |||||| |||| | ||||| | Sbjct 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310 Query 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338 |||||||||||| || || |||| || ||| |||||||||| | ||||||||||||||| Sbjct 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368 Query 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398 || |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGGAAATTCTTAA 428 Query 399 GCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGA 458 ||||||||| |||||||||||||||||||| |||| |||||||||||||| |||||||| Sbjct 429 GCTCTTGAACAATTTTAAAGCTCGCAGAGTCGATGCTGCTAGTGTCATTGCAAGGGTGGA 488 Query 459 GGAACTCATGAAAGATCACTC-GAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTA 517 |||||| ||||||||||| | || |||||| |||||||| || |||| |||||||||| Sbjct 489 TGAACTCTTGAAAGATCAC-CAGAGCCTGCTTCTTGGTTTCAGTCTCTTTCTTTCAGCTA 547 Query 518 -CAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCAAGTAGTT 576 || || || || || ||||| |||| ||||||||| ||||||||||| |||||| Sbjct 548 ACAT-GAATTCTATCAGGAAGCCAAAGGGTTTGTTTCAGGGAGATGGTAGTCATGTAGTT 606 Query 577 GACTCAGTTCTTCAGA 592 ||||||||||||||| Sbjct 607 AACTCAGTTCTTCAGA 622 > Ahg930697 jgi|Araly1|930697|scaffold_303154.1 Length=667 Score = 327 bits (177), Expect = 5e-89 Identities = 436/556 (78%), Gaps = 37/556 (7%) Strand=Plus/Plus Query 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117 ||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || | Sbjct 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139 Query 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173 | ||| | || ||| ||| || | || | | | ||||| || | |||| | || Sbjct 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194 Query 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231 | |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| | Sbjct 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250 Query 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280 || ||||| | || | |||||||||| | |||||| |||| | ||||| | Sbjct 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310 Query 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338 |||||||||||| || || |||| || ||| |||||||||| | ||||||||||||||| Sbjct 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368 Query 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398 || |||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGGAAATTCTTAA 428 Query 399 GCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGA 458 ||||||||| |||||||||||||||||||| |||| |||||||||||||| |||||||| Sbjct 429 GCTCTTGAACAATTTTAAAGCTCGCAGAGTCGATGCTGCTAGTGTCATTGCAAGGGTGGA 488 Query 459 GGAACTCATGAAAGATCACTC-GAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTA 517 |||||| ||||||||||| | || |||||| |||||||| || |||| |||||||||| Sbjct 489 TGAACTCTTGAAAGATCAC-CAGAGCCTGCTTCTTGGTTTCAGTCTCTTTCTTTCAGCTA 547 Query 518 -CAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCAAGTAGTT 576 || || || || || ||||| |||| ||||||||| ||||||||||| |||||| Sbjct 548 ACAT-GAATTCTATCAGGAAGCCAAAGGGTTTGTTTCAGGGAGATGGTAGTCATGTAGTT 606 Query 577 GACTCAGTTCTTCAGA 592 ||||||||||||||| Sbjct 607 AACTCAGTTCTTCAGA 622 > Ahg921492 jgi|Araly1|921492|scaffold_102773.1 Length=579 Score = 281 bits (152), Expect = 4e-75 Identities = 279/338 (83%), Gaps = 17/338 (5%) Strand=Plus/Plus Query 35 TGGAAGATG-GAAAGGCATACGTC-AATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACC 92 ||||||||| | | | ||||| || || ||||||| || |||||||||||| || ||||| Sbjct 23 TGGAAGATGCG-ATGTCATACATCGAA-GCTGTGAGGGACGCATTGGAGGATGCTGAACC 80 Query 93 TGCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGAGGTGATAGCGC-GA-AGGATGGG 149 || ||||||| ||||||||||||| || ||||| ||| | | | || || || || || Sbjct 81 TGAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGA--TTTTGGAGCTGATAGAATCGG 137 Query 150 TATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTC 208 ||| ||| ||||||||||| |||| ||||| ||||||||||||||| || |||| | || Sbjct 138 TATAGCTGCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT-TC 196 Query 209 TTGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCG 268 ||||||| |||||| | ||| ||| ||||| ||| | | ||||||||| ||||||||| Sbjct 197 TTGGTTTCAATGTCTTCCTTCCACTTGAGTTTCAAATAACCATCCCTCTCGAGGCTAG-T 255 Query 269 A-AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGAT 327 | ||||||||||||||||||||||||||||||||||| | | ||||| |||| || ||| Sbjct 256 ACAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCAC--C-GAAGCCTGCCATGGAAGAT 312 Query 328 GCGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCA 365 ||||||||||| ||||||||||| ||| |||||||||| Sbjct 313 GCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCA 350 Score = 169 bits (91), Expect = 3e-41 Identities = 112/122 (92%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 424 AGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGAAT 483 ||| || |||| |||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 367 AGAATCGATGCTGCTATTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAAT 426 Query 484 CTGCTT-TTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTAA 542 || ||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 427 CTTCTTCTTTG-TTTCTGTGTCTTCCTTTCAGCTACAAGGAGTTTTATCACGAAGCTTAA 485 Query 543 GG 544 || Sbjct 486 GG 487 > Ahg930698 jgi|Araly1|930698|scaffold_303155.1 Length=479 Score = 172 bits (93), Expect = 2e-42 Identities = 294/386 (76%), Gaps = 33/386 (9%) Strand=Plus/Plus Query 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117 ||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || | Sbjct 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139 Query 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173 | ||| | || ||| ||| || | || | | | ||||| || | |||| | || Sbjct 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194 Query 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231 | |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| | Sbjct 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250 Query 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280 || ||||| | || | |||||||||| | |||||| |||| | ||||| | Sbjct 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310 Query 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338 |||||||||||| || || |||| || ||| |||||||||| | ||||||||||||||| Sbjct 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368 Query 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398 || |||| ||||||||||||||||||||||||||||||| |||||| |||| ||||| Sbjct 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGAAAATTCTTAA 428 Query 399 GCTCTTGAATGATTTTAAAGCTCGCA 424 ||||||||| ||||||||||||||| Sbjct 429 GCTCTTGAACAATTTTAAAGCTCGCA 454 > Ahg912289 jgi|Araly1|912289|Al_scaffold_0001_2543 Length=2433 Score = 147 bits (79), Expect = 1e-34 Identities = 155/191 (81%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 323 ATGATGCGA-CTTCATACCTC-ATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAA 380 ||||||| | ||||||| || | | | |||||||||||||||||||||||||||||||| Sbjct 1220 ATGATGC-ATGTTCATACATCTACT-CCGTGAAGGAAGCATTTCATGATGAACCTGCAAA 1277 Query 381 ATATGAGGAAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCG-CTA 439 ||||| || | || ||||||||| ||| || || ||| || |||||| || | | | Sbjct 1278 ATATGCCGAGTTTCTCAAGCTCTTGGATGCTTATAGAGCCCGTAGAGTCGATAAAGAC-A 1336 Query 440 GTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGA-ATCTGCTTTTTGGTTTC 498 |||||||||| ||| |||||||||||| |||||||||| || |||||||| ||||||| Sbjct 1337 GTGTCATTGCAAGGTTGGAGGAACTCACGAAAGATCAC-CGGGATCTGCTTCTTGGTTTA 1395 Query 499 TGTGTCTTCCT 509 ||| |||||| Sbjct 1396 AGTGCCTTCCT 1406 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26724164817 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5