BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G23810.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227 778 0.0
Ahg930704 jgi|Araly1|930704|scaffold_303161.1 327 5e-89
Ahg930697 jgi|Araly1|930697|scaffold_303154.1 327 5e-89
Ahg921492 jgi|Araly1|921492|scaffold_102773.1 281 4e-75
Ahg930698 jgi|Araly1|930698|scaffold_303155.1 172 2e-42
Ahg912289 jgi|Araly1|912289|Al_scaffold_0001_2543 147 1e-34
> Ahg335662 jgi|Araly1|335662|fgenesh1_pg.C_scaffold_1002227
Length=711
Score = 778 bits (421), Expect = 0.0
Identities = 600/685 (88%), Gaps = 17/685 (2%)
Strand=Plus/Plus
Query 35 TGGAAGATG-GAAAGGCATACGTCAATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACCT 93
||||||||| | | | | ||| || ||||||||| || ||||||| |||| || ||||||
Sbjct 35 TGGAAGATGCG-ATGTCGTACATCGATGCTGTGAGGGACGCATTGCAGGATGCTGAACCT 93
Query 94 GCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGAGGTGATAGCGC-GA-AGGATGGGT 150
| ||||||| ||||||||||||| || ||||| ||| | | | || || || || |||
Sbjct 94 GAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGA--TTTTGGAGCTGATAGAATCGGT 150
Query 151 ATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTCT 209
|| ||| ||||||||||| |||||||||| ||||||||||||||| || |||| | |||
Sbjct 151 ATAGCTGCTTTCAGTGCAAGCATGCAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCT 209
Query 210 TGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGA 269
|||||| |||||| | ||| ||| | ||| ||||| | ||||||||||||||||||| |
Sbjct 210 TGGTTTCAATGTCTTCCTTCCACTTCAGTTTCAGATAAACATCCCTCCCGAGGCTAGC-A 268
Query 270 -AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGATG 328
||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||
Sbjct 269 CAGAGTTTCATAAGGTGGTTAGAAGAAGCGTACCA---CCGAAGCCTACCATGGATGATG 325
Query 329 CGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGG 388
|||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 326 CGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCATGATGAACCTACAAAATATGAGG 385
Query 389 AAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTG 448
|||| ||||||||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct 386 AAATTATTAAGCTCTTGAATGATCTTAAAGCTCGCAGACTCGATGCTGCTAGTGTCATTG 445
Query 449 CTAGGGTGGAGGAACTCATGAAAGATCACTCGAATCTGCTTTTTGGTTTCTGTGTCTTCC 508
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 446 CTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTCTTGGTTTCTGTGTCTTCC 505
Query 509 TTTCAGCTACAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTC 568
||||||||| || |||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 506 TTTCAGCTAAAATGAGTTTTATCACGAAGCTTAAGGTAAGGTTTCAGGGCGATGGTAGTC 565
Query 569 AAGTAGTTGACTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAAC 628
| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 566 ATGTCGTTGACTCAGTTCTTCAGATAATGAGAATGTACAGTGAGGGAAACAAGTCCAAAA 625
Query 629 ATGATGCGTATCAGGAGATCGTTGCACTTGTTCAGGGTCATG-ACGATTTAGTCATGGAG 687
|||||| |||||||||| ||| ||||||| |||||||||||| | |||||| ||||||||
Sbjct 626 ATGATGTGTATCAGGAGGTCGGTGCACTTATTCAGGGTCATGGA-GATTTACTCATGGAG 684
Query 688 CTTTCACAAATTTTCACTGATCCAT 712
|||||| ||||||||| |||| |||
Sbjct 685 CTTTCAGAAATTTTCAGTGATTCAT 709
> Ahg930704 jgi|Araly1|930704|scaffold_303161.1
Length=667
Score = 327 bits (177), Expect = 5e-89
Identities = 436/556 (78%), Gaps = 37/556 (7%)
Strand=Plus/Plus
Query 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117
||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || |
Sbjct 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139
Query 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173
| ||| | || ||| ||| || | || | | | ||||| || | |||| | ||
Sbjct 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194
Query 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231
| |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| |
Sbjct 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250
Query 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280
|| ||||| | || | |||||||||| | |||||| |||| | ||||| |
Sbjct 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310
Query 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338
|||||||||||| || || |||| || ||| |||||||||| | |||||||||||||||
Sbjct 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368
Query 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398
|| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGGAAATTCTTAA 428
Query 399 GCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGA 458
||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 429 GCTCTTGAACAATTTTAAAGCTCGCAGAGTCGATGCTGCTAGTGTCATTGCAAGGGTGGA 488
Query 459 GGAACTCATGAAAGATCACTC-GAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTA 517
|||||| ||||||||||| | || |||||| |||||||| || |||| ||||||||||
Sbjct 489 TGAACTCTTGAAAGATCAC-CAGAGCCTGCTTCTTGGTTTCAGTCTCTTTCTTTCAGCTA 547
Query 518 -CAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCAAGTAGTT 576
|| || || || || ||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 548 ACAT-GAATTCTATCAGGAAGCCAAAGGGTTTGTTTCAGGGAGATGGTAGTCATGTAGTT 606
Query 577 GACTCAGTTCTTCAGA 592
|||||||||||||||
Sbjct 607 AACTCAGTTCTTCAGA 622
> Ahg930697 jgi|Araly1|930697|scaffold_303154.1
Length=667
Score = 327 bits (177), Expect = 5e-89
Identities = 436/556 (78%), Gaps = 37/556 (7%)
Strand=Plus/Plus
Query 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117
||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || |
Sbjct 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139
Query 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173
| ||| | || ||| ||| || | || | | | ||||| || | |||| | ||
Sbjct 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194
Query 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231
| |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| |
Sbjct 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250
Query 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280
|| ||||| | || | |||||||||| | |||||| |||| | ||||| |
Sbjct 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310
Query 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338
|||||||||||| || || |||| || ||| |||||||||| | |||||||||||||||
Sbjct 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368
Query 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398
|| |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGGAAATTCTTAA 428
Query 399 GCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGA 458
||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 429 GCTCTTGAACAATTTTAAAGCTCGCAGAGTCGATGCTGCTAGTGTCATTGCAAGGGTGGA 488
Query 459 GGAACTCATGAAAGATCACTC-GAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTA 517
|||||| ||||||||||| | || |||||| |||||||| || |||| ||||||||||
Sbjct 489 TGAACTCTTGAAAGATCAC-CAGAGCCTGCTTCTTGGTTTCAGTCTCTTTCTTTCAGCTA 547
Query 518 -CAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCAAGTAGTT 576
|| || || || || ||||| |||| ||||||||| ||||||||||| ||||||
Sbjct 548 ACAT-GAATTCTATCAGGAAGCCAAAGGGTTTGTTTCAGGGAGATGGTAGTCATGTAGTT 606
Query 577 GACTCAGTTCTTCAGA 592
|||||||||||||||
Sbjct 607 AACTCAGTTCTTCAGA 622
> Ahg921492 jgi|Araly1|921492|scaffold_102773.1
Length=579
Score = 281 bits (152), Expect = 4e-75
Identities = 279/338 (83%), Gaps = 17/338 (5%)
Strand=Plus/Plus
Query 35 TGGAAGATG-GAAAGGCATACGTC-AATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACC 92
||||||||| | | | ||||| || || ||||||| || |||||||||||| || |||||
Sbjct 23 TGGAAGATGCG-ATGTCATACATCGAA-GCTGTGAGGGACGCATTGGAGGATGCTGAACC 80
Query 93 TGCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGAGGTGATAGCGC-GA-AGGATGGG 149
|| ||||||| ||||||||||||| || ||||| ||| | | | || || || || ||
Sbjct 81 TGAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGA--TTTTGGAGCTGATAGAATCGG 137
Query 150 TATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTC 208
||| ||| ||||||||||| |||| ||||| ||||||||||||||| || |||| | ||
Sbjct 138 TATAGCTGCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT-TC 196
Query 209 TTGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCG 268
||||||| |||||| | ||| ||| ||||| ||| | | ||||||||| |||||||||
Sbjct 197 TTGGTTTCAATGTCTTCCTTCCACTTGAGTTTCAAATAACCATCCCTCTCGAGGCTAG-T 255
Query 269 A-AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGAT 327
| ||||||||||||||||||||||||||||||||||| | | ||||| |||| || |||
Sbjct 256 ACAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCAC--C-GAAGCCTGCCATGGAAGAT 312
Query 328 GCGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCA 365
||||||||||| ||||||||||| ||| ||||||||||
Sbjct 313 GCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCA 350
Score = 169 bits (91), Expect = 3e-41
Identities = 112/122 (92%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 424 AGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGAAT 483
||| || |||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 367 AGAATCGATGCTGCTATTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAAT 426
Query 484 CTGCTT-TTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTAA 542
|| ||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 427 CTTCTTCTTTG-TTTCTGTGTCTTCCTTTCAGCTACAAGGAGTTTTATCACGAAGCTTAA 485
Query 543 GG 544
||
Sbjct 486 GG 487
> Ahg930698 jgi|Araly1|930698|scaffold_303155.1
Length=479
Score = 172 bits (93), Expect = 2e-42
Identities = 294/386 (76%), Gaps = 33/386 (9%)
Strand=Plus/Plus
Query 60 TGCTGTGAAG-GTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCT-AAGA 117
||||||| || | |||||| |||| | ||||||||||||| |||||||||||| || |
Sbjct 81 TGCTGTG-AGTGACGCATTACAGGATGATGAACCTGCAAAATTTCAAGAGTTTCTCAACA 139
Query 118 CTCTTTCA-TGA-GGTGATAGCGCGAAGGA-TGGGTATGGCTACTTTCAG-TGCACGCAT 173
| ||| | || ||| ||| || | || | | | ||||| || | |||| | ||
Sbjct 140 -T-TTTTAGGGATTTTGA-AGCTCGTA-GAGTCGACACACCTACTGTC-GTTGCAAGAAT 194
Query 174 GCAGGACCTCTTGAAAGATCAC-CCGAGTCTG-TGTCTTGGTTTAAATGTCATGCTTGCA 231
| |||| || ||| | |||||| | | |||| | ||||||||||||| | | ||| |
Sbjct 195 GGAGGAACTATTGTATGATCACTTC-AATCTGCT-TCTTGGTTTAAATACCTTCCTT-C- 250
Query 232 CC--TGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGA-----G----TTTCATA 280
|| ||||| | || | |||||||||| | |||||| |||| | ||||| |
Sbjct 251 CCGTTGAGTTTTGGATAACCATCCCTCCTGTGGCTAGAAAAGAGTCCGGCCAATTTCAAA 310
Query 281 AGGTGGTTGGAAGAA-GCGTACC-ACGTCCGGAGCCTACCATAGATGATGCGACTTCATA 338
|||||||||||| || || |||| || ||| |||||||||| | |||||||||||||||
Sbjct 311 AGGTGGTTGGAAAAAGGC-TACCGCCG-CCGAAGCCTACCATGGGTGATGCGACTTCATA 368
Query 339 CCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAA 398
|| |||| ||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 369 TATCGCTGCTCTGAAGGAAGCATTTCATGATGAACCTGCAAAGTATGAGAAAATTCTTAA 428
Query 399 GCTCTTGAATGATTTTAAAGCTCGCA 424
||||||||| |||||||||||||||
Sbjct 429 GCTCTTGAACAATTTTAAAGCTCGCA 454
> Ahg912289 jgi|Araly1|912289|Al_scaffold_0001_2543
Length=2433
Score = 147 bits (79), Expect = 1e-34
Identities = 155/191 (81%), Gaps = 8/191 (4%)
Strand=Plus/Plus
Query 323 ATGATGCGA-CTTCATACCTC-ATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAA 380
||||||| | ||||||| || | | | ||||||||||||||||||||||||||||||||
Sbjct 1220 ATGATGC-ATGTTCATACATCTACT-CCGTGAAGGAAGCATTTCATGATGAACCTGCAAA 1277
Query 381 ATATGAGGAAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCG-CTA 439
||||| || | || ||||||||| ||| || || ||| || |||||| || | | |
Sbjct 1278 ATATGCCGAGTTTCTCAAGCTCTTGGATGCTTATAGAGCCCGTAGAGTCGATAAAGAC-A 1336
Query 440 GTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGA-ATCTGCTTTTTGGTTTC 498
|||||||||| ||| |||||||||||| |||||||||| || |||||||| |||||||
Sbjct 1337 GTGTCATTGCAAGGTTGGAGGAACTCACGAAAGATCAC-CGGGATCTGCTTCTTGGTTTA 1395
Query 499 TGTGTCTTCCT 509
||| ||||||
Sbjct 1396 AGTGCCTTCCT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5